Experiment: propionate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS06870 and ABID97_RS06875 are separated by 6 nucleotides ABID97_RS06875 and ABID97_RS06880 are separated by 27 nucleotides ABID97_RS06880 and ABID97_RS06885 are separated by 147 nucleotides ABID97_RS06885 and ABID97_RS06890 are separated by 80 nucleotides
ABID97_RS06870: ABID97_RS06870 - IlvD/Edd family dehydratase, at 1,450,810 to 1,452,561
_RS06870
ABID97_RS06875: ABID97_RS06875 - dihydrodipicolinate synthase family protein, at 1,452,568 to 1,453,485
_RS06875
ABID97_RS06880: ABID97_RS06880 - hypothetical protein, at 1,453,513 to 1,453,767
_RS06880
ABID97_RS06885: ABID97_RS06885 - hypothetical protein, at 1,453,915 to 1,454,451
_RS06885
ABID97_RS06890: ABID97_RS06890 - hypothetical protein, at 1,454,532 to 1,454,945
_RS06890
Position (kb) 1453
1454 Strain fitness (log2 ratio) -1
0
1
2
3
4
5
6
7
8
9 at 1452.580 kb on + strand at 1452.581 kb on - strand at 1452.815 kb on - strand, within ABID97_RS06875 at 1452.941 kb on - strand, within ABID97_RS06875 at 1453.285 kb on + strand, within ABID97_RS06875 at 1453.286 kb on - strand, within ABID97_RS06875 at 1453.312 kb on + strand, within ABID97_RS06875 at 1453.575 kb on - strand, within ABID97_RS06880 at 1453.644 kb on - strand, within ABID97_RS06880 at 1453.803 kb on + strand at 1453.804 kb on - strand at 1453.804 kb on - strand at 1453.804 kb on - strand at 1453.804 kb on - strand at 1453.804 kb on - strand at 1453.804 kb on - strand at 1453.804 kb on - strand at 1453.804 kb on - strand at 1453.805 kb on + strand at 1453.805 kb on + strand at 1453.805 kb on + strand at 1453.806 kb on - strand at 1453.810 kb on - strand at 1453.810 kb on - strand at 1454.234 kb on + strand, within ABID97_RS06885 at 1454.351 kb on + strand, within ABID97_RS06885 at 1454.355 kb on + strand, within ABID97_RS06885 at 1454.356 kb on - strand, within ABID97_RS06885 at 1454.439 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction propionate (C) remove 1,452,580 + +0.2 1,452,581 - +0.6 1,452,815 - ABID97_RS06875 0.27 -0.2 1,452,941 - ABID97_RS06875 0.41 -0.8 1,453,285 + ABID97_RS06875 0.78 -0.8 1,453,286 - ABID97_RS06875 0.78 +1.3 1,453,312 + ABID97_RS06875 0.81 -1.4 1,453,575 - ABID97_RS06880 0.24 -0.1 1,453,644 - ABID97_RS06880 0.51 +0.1 1,453,803 + +9.0 1,453,804 - +0.3 1,453,804 - +0.8 1,453,804 - +1.7 1,453,804 - +1.1 1,453,804 - +2.7 1,453,804 - +0.1 1,453,804 - -0.4 1,453,804 - -0.0 1,453,805 + -1.0 1,453,805 + +0.9 1,453,805 + +0.4 1,453,806 - -0.1 1,453,810 - +0.9 1,453,810 - -0.9 1,454,234 + ABID97_RS06885 0.59 -0.1 1,454,351 + ABID97_RS06885 0.81 +0.2 1,454,355 + ABID97_RS06885 0.82 -0.5 1,454,356 - ABID97_RS06885 0.82 +0.7 1,454,439 + -0.0
Or see this region's nucleotide sequence