Strain Fitness in Variovorax sp. OAS795 around ABID97_RS05215

Experiment: propionate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS05205 and ABID97_RS05210 are separated by 285 nucleotidesABID97_RS05210 and ABID97_RS05215 are separated by 22 nucleotidesABID97_RS05215 and ABID97_RS05220 are separated by 16 nucleotidesABID97_RS05220 and ABID97_RS05225 are separated by 20 nucleotidesABID97_RS05225 and ABID97_RS05230 are separated by 278 nucleotides ABID97_RS05205: ABID97_RS05205 - response regulator transcription factor, at 1,095,706 to 1,096,389 _RS05205 ABID97_RS05210: ABID97_RS05210 - hypothetical protein, at 1,096,675 to 1,097,073 _RS05210 ABID97_RS05215: ABID97_RS05215 - hypothetical protein, at 1,097,096 to 1,097,551 _RS05215 ABID97_RS05220: ABID97_RS05220 - hypothetical protein, at 1,097,568 to 1,097,795 _RS05220 ABID97_RS05225: ABID97_RS05225 - translation initiation factor IF-2, at 1,097,816 to 1,098,172 _RS05225 ABID97_RS05230: ABID97_RS05230 - hypothetical protein, at 1,098,451 to 1,098,636 _RS05230 Position (kb) 1097 1098Strain fitness (log2 ratio) -2 -1 0 1at 1096.705 kb on + strandat 1097.333 kb on + strand, within ABID97_RS05215at 1097.605 kb on + strand, within ABID97_RS05220at 1097.605 kb on + strand, within ABID97_RS05220at 1098.129 kb on + strand, within ABID97_RS05225at 1098.236 kb on - strandat 1098.307 kb on + strandat 1098.307 kb on + strandat 1098.308 kb on - strandat 1098.411 kb on + strandat 1098.412 kb on - strandat 1098.412 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction propionate (C)
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1,096,705 + +0.3
1,097,333 + ABID97_RS05215 0.52 -1.8
1,097,605 + ABID97_RS05220 0.16 +0.2
1,097,605 + ABID97_RS05220 0.16 -0.2
1,098,129 + ABID97_RS05225 0.88 -0.4
1,098,236 - +0.3
1,098,307 + -0.5
1,098,307 + +0.5
1,098,308 - -0.4
1,098,411 + -0.6
1,098,412 - +0.0
1,098,412 - +0.2

Or see this region's nucleotide sequence