Experiment: propionate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS04440 and ABID97_RS04445 are separated by 100 nucleotides ABID97_RS04445 and ABID97_RS04450 are separated by 50 nucleotides
ABID97_RS04440: ABID97_RS04440 - NAD(P)(+) transhydrogenase (Re/Si-specific) subunit beta, at 918,455 to 919,882
_RS04440
ABID97_RS04445: ABID97_RS04445 - long-chain-fatty-acid--CoA ligase, at 919,983 to 921,662
_RS04445
ABID97_RS04450: ABID97_RS04450 - ABC transporter permease subunit, at 921,713 to 922,717
_RS04450
Position (kb) 919
920
921
922 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 919.260 kb on - strand, within ABID97_RS04440 at 919.260 kb on - strand, within ABID97_RS04440 at 920.049 kb on + strand at 920.091 kb on + strand at 920.091 kb on + strand at 920.110 kb on - strand at 920.136 kb on + strand at 920.176 kb on - strand, within ABID97_RS04445 at 920.478 kb on + strand, within ABID97_RS04445 at 920.478 kb on + strand, within ABID97_RS04445 at 920.478 kb on + strand, within ABID97_RS04445 at 920.478 kb on + strand, within ABID97_RS04445 at 920.478 kb on + strand, within ABID97_RS04445 at 920.479 kb on - strand, within ABID97_RS04445 at 920.479 kb on - strand, within ABID97_RS04445 at 920.479 kb on - strand, within ABID97_RS04445 at 920.515 kb on - strand, within ABID97_RS04445 at 920.620 kb on - strand, within ABID97_RS04445 at 920.620 kb on - strand, within ABID97_RS04445 at 920.620 kb on - strand, within ABID97_RS04445 at 920.772 kb on + strand, within ABID97_RS04445 at 920.772 kb on + strand, within ABID97_RS04445 at 921.120 kb on + strand, within ABID97_RS04445 at 921.120 kb on + strand, within ABID97_RS04445 at 921.121 kb on - strand, within ABID97_RS04445 at 921.121 kb on - strand, within ABID97_RS04445 at 921.121 kb on - strand, within ABID97_RS04445 at 921.294 kb on + strand, within ABID97_RS04445 at 921.294 kb on + strand, within ABID97_RS04445 at 921.337 kb on - strand, within ABID97_RS04445 at 921.393 kb on + strand, within ABID97_RS04445 at 921.543 kb on + strand at 921.543 kb on + strand at 921.544 kb on - strand at 921.660 kb on + strand at 921.660 kb on + strand at 921.660 kb on + strand at 921.701 kb on + strand at 921.702 kb on - strand at 921.909 kb on - strand, within ABID97_RS04450 at 921.917 kb on + strand, within ABID97_RS04450 at 921.917 kb on + strand, within ABID97_RS04450 at 921.918 kb on - strand, within ABID97_RS04450 at 922.229 kb on + strand, within ABID97_RS04450 at 922.409 kb on + strand, within ABID97_RS04450 at 922.410 kb on - strand, within ABID97_RS04450 at 922.410 kb on - strand, within ABID97_RS04450 at 922.410 kb on - strand, within ABID97_RS04450 at 922.410 kb on - strand, within ABID97_RS04450 at 922.410 kb on - strand, within ABID97_RS04450 at 922.410 kb on - strand, within ABID97_RS04450
Per-strain Table
Position Strand Gene LocusTag Fraction propionate (C) remove 919,260 - ABID97_RS04440 0.56 -0.5 919,260 - ABID97_RS04440 0.56 -0.4 920,049 + -0.8 920,091 + -0.6 920,091 + -0.4 920,110 - -0.1 920,136 + +0.3 920,176 - ABID97_RS04445 0.11 -0.6 920,478 + ABID97_RS04445 0.29 -0.5 920,478 + ABID97_RS04445 0.29 -0.1 920,478 + ABID97_RS04445 0.29 -2.1 920,478 + ABID97_RS04445 0.29 -0.5 920,478 + ABID97_RS04445 0.29 +1.4 920,479 - ABID97_RS04445 0.30 +0.0 920,479 - ABID97_RS04445 0.30 -1.0 920,479 - ABID97_RS04445 0.30 -0.7 920,515 - ABID97_RS04445 0.32 -1.3 920,620 - ABID97_RS04445 0.38 -0.3 920,620 - ABID97_RS04445 0.38 -1.5 920,620 - ABID97_RS04445 0.38 -0.7 920,772 + ABID97_RS04445 0.47 -2.0 920,772 + ABID97_RS04445 0.47 -0.0 921,120 + ABID97_RS04445 0.68 -0.6 921,120 + ABID97_RS04445 0.68 +0.7 921,121 - ABID97_RS04445 0.68 -1.2 921,121 - ABID97_RS04445 0.68 -0.5 921,121 - ABID97_RS04445 0.68 -0.8 921,294 + ABID97_RS04445 0.78 -0.2 921,294 + ABID97_RS04445 0.78 -0.5 921,337 - ABID97_RS04445 0.81 -1.1 921,393 + ABID97_RS04445 0.84 -1.3 921,543 + -0.3 921,543 + -0.5 921,544 - -0.9 921,660 + -0.3 921,660 + -0.2 921,660 + +2.7 921,701 + -1.0 921,702 - -0.1 921,909 - ABID97_RS04450 0.20 -0.0 921,917 + ABID97_RS04450 0.20 +0.1 921,917 + ABID97_RS04450 0.20 -0.4 921,918 - ABID97_RS04450 0.20 -0.7 922,229 + ABID97_RS04450 0.51 -1.4 922,409 + ABID97_RS04450 0.69 +1.3 922,410 - ABID97_RS04450 0.69 +3.3 922,410 - ABID97_RS04450 0.69 -0.2 922,410 - ABID97_RS04450 0.69 +1.1 922,410 - ABID97_RS04450 0.69 -0.2 922,410 - ABID97_RS04450 0.69 -0.4 922,410 - ABID97_RS04450 0.69 -0.2
Or see this region's nucleotide sequence