Experiment: propionate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS04405 and ABID97_RS04410 are separated by 43 nucleotides ABID97_RS04410 and ABID97_RS04415 are separated by 61 nucleotides
ABID97_RS04405: ABID97_RS04405 - FxLYD domain-containing protein, at 911,351 to 913,033
_RS04405
ABID97_RS04410: ABID97_RS04410 - LLM class flavin-dependent oxidoreductase, at 913,077 to 914,063
_RS04410
ABID97_RS04415: ABID97_RS04415 - tRNA 2-thiouridine(34) synthase MnmA, at 914,125 to 915,231
_RS04415
Position (kb) 913
914
915 Strain fitness (log2 ratio) -2
-1
0
1 at 912.137 kb on + strand, within ABID97_RS04405 at 912.284 kb on + strand, within ABID97_RS04405 at 912.285 kb on - strand, within ABID97_RS04405 at 912.491 kb on + strand, within ABID97_RS04405 at 912.491 kb on + strand, within ABID97_RS04405 at 912.491 kb on + strand, within ABID97_RS04405 at 912.491 kb on + strand, within ABID97_RS04405 at 912.492 kb on - strand, within ABID97_RS04405 at 912.492 kb on - strand, within ABID97_RS04405 at 912.608 kb on + strand, within ABID97_RS04405 at 912.608 kb on + strand, within ABID97_RS04405 at 912.609 kb on - strand, within ABID97_RS04405 at 912.614 kb on + strand, within ABID97_RS04405 at 913.031 kb on + strand at 913.031 kb on + strand at 913.031 kb on + strand at 913.032 kb on - strand at 913.369 kb on - strand, within ABID97_RS04410 at 913.620 kb on + strand, within ABID97_RS04410 at 913.674 kb on + strand, within ABID97_RS04410 at 913.716 kb on + strand, within ABID97_RS04410 at 913.716 kb on + strand, within ABID97_RS04410 at 913.717 kb on - strand, within ABID97_RS04410 at 913.717 kb on - strand, within ABID97_RS04410 at 913.717 kb on - strand, within ABID97_RS04410 at 914.028 kb on + strand at 914.029 kb on - strand at 914.124 kb on + strand at 914.124 kb on + strand at 914.125 kb on - strand at 914.125 kb on - strand at 914.125 kb on - strand at 914.125 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction propionate (C) remove 912,137 + ABID97_RS04405 0.47 +0.7 912,284 + ABID97_RS04405 0.55 -0.5 912,285 - ABID97_RS04405 0.55 -2.2 912,491 + ABID97_RS04405 0.68 +0.5 912,491 + ABID97_RS04405 0.68 -0.9 912,491 + ABID97_RS04405 0.68 +0.4 912,491 + ABID97_RS04405 0.68 -0.7 912,492 - ABID97_RS04405 0.68 -0.2 912,492 - ABID97_RS04405 0.68 +0.1 912,608 + ABID97_RS04405 0.75 -1.2 912,608 + ABID97_RS04405 0.75 +0.0 912,609 - ABID97_RS04405 0.75 -0.7 912,614 + ABID97_RS04405 0.75 -0.8 913,031 + -0.1 913,031 + -0.3 913,031 + -1.5 913,032 - -0.1 913,369 - ABID97_RS04410 0.30 -0.7 913,620 + ABID97_RS04410 0.55 +0.3 913,674 + ABID97_RS04410 0.60 -0.2 913,716 + ABID97_RS04410 0.65 -1.2 913,716 + ABID97_RS04410 0.65 -1.0 913,717 - ABID97_RS04410 0.65 -0.2 913,717 - ABID97_RS04410 0.65 +0.2 913,717 - ABID97_RS04410 0.65 +0.0 914,028 + -0.5 914,029 - -0.4 914,124 + -0.6 914,124 + +0.4 914,125 - +1.3 914,125 - -0.4 914,125 - -1.9 914,125 - -0.3
Or see this region's nucleotide sequence