Experiment: propionate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS03535 and ABID97_RS03540 overlap by 4 nucleotides ABID97_RS03540 and ABID97_RS03545 are separated by 48 nucleotides ABID97_RS03545 and ABID97_RS03550 are separated by 71 nucleotides
ABID97_RS03535: ABID97_RS03535 - ABC transporter ATP-binding protein, at 722,286 to 723,089
_RS03535
ABID97_RS03540: ABID97_RS03540 - ABC transporter ATP-binding protein, at 723,086 to 723,820
_RS03540
ABID97_RS03545: ABID97_RS03545 - bifunctional nicotinamidase/pyrazinamidase, at 723,869 to 724,591
_RS03545
ABID97_RS03550: ABID97_RS03550 - ABC transporter substrate-binding protein, at 724,663 to 725,823
_RS03550
Position (kb) 723
724 Strain fitness (log2 ratio) -1
0
1
2 at 722.302 kb on + strand at 722.302 kb on + strand at 722.311 kb on + strand at 722.311 kb on + strand at 722.312 kb on - strand at 722.312 kb on - strand at 723.009 kb on + strand at 723.009 kb on + strand at 723.009 kb on + strand at 723.009 kb on + strand at 723.009 kb on + strand at 723.010 kb on - strand at 723.155 kb on + strand at 723.575 kb on + strand, within ABID97_RS03540 at 723.575 kb on + strand, within ABID97_RS03540 at 723.728 kb on + strand, within ABID97_RS03540 at 723.728 kb on + strand, within ABID97_RS03540 at 723.729 kb on - strand, within ABID97_RS03540 at 723.819 kb on - strand at 724.317 kb on - strand, within ABID97_RS03545 at 724.397 kb on + strand, within ABID97_RS03545 at 724.398 kb on - strand, within ABID97_RS03545 at 724.398 kb on - strand, within ABID97_RS03545
Per-strain Table
Position Strand Gene LocusTag Fraction propionate (C) remove 722,302 + -0.1 722,302 + -0.7 722,311 + +0.1 722,311 + -0.5 722,312 - +0.7 722,312 - +2.6 723,009 + -1.2 723,009 + +0.7 723,009 + +1.1 723,009 + -0.6 723,009 + -0.3 723,010 - +0.2 723,155 + -0.3 723,575 + ABID97_RS03540 0.67 +1.6 723,575 + ABID97_RS03540 0.67 -0.0 723,728 + ABID97_RS03540 0.87 -0.3 723,728 + ABID97_RS03540 0.87 +1.3 723,729 - ABID97_RS03540 0.87 +0.2 723,819 - +0.3 724,317 - ABID97_RS03545 0.62 -0.3 724,397 + ABID97_RS03545 0.73 -0.9 724,398 - ABID97_RS03545 0.73 +0.4 724,398 - ABID97_RS03545 0.73 +0.2
Or see this region's nucleotide sequence