Strain Fitness in Escherichia coli BW25113 around b4016

Experiment: a-Ketoglutaric (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	a-Ketoglutaric (C)
4,215,702	+	aceA	b4015	0.44	-0.9
4,215,736	-	aceA	b4015	0.46	+0.8
4,215,759	+	aceA	b4015	0.48	+1.9
4,215,813	+	aceA	b4015	0.52	+0.9
4,215,878	-	aceA	b4015	0.57	+0.1
4,215,878	-	aceA	b4015	0.57	-1.4
4,215,941	-	aceA	b4015	0.62	+0.9
4,215,965	+	aceA	b4015	0.64	+2.0
4,215,989	-	aceA	b4015	0.66	+0.2
4,215,989	-	aceA	b4015	0.66	+1.0
4,216,035	+	aceA	b4015	0.69	-0.1
4,216,074	+	aceA	b4015	0.72	+2.8
4,216,074	+	aceA	b4015	0.72	+1.5
4,216,082	-	aceA	b4015	0.73	+2.7
4,216,194	+	aceA	b4015	0.81	+2.2
4,216,291	-	aceA	b4015	0.89	+2.1
4,216,350	-				+0.4
4,216,350	-				+0.1
4,216,414	-				+0.7
4,216,465	-				+1.3
4,216,506	-				+0.3
4,216,506	-				+1.3
4,216,564	+				-0.0
4,216,564	+				+0.8
4,216,600	+				+0.4
4,216,701	+				+0.5
4,216,727	-				+0.2
4,216,774	+				+0.0
4,216,790	-				+0.7
4,216,858	-	aceK	b4016	0.14	+1.4
4,216,875	+	aceK	b4016	0.15	-0.4
4,216,909	-	aceK	b4016	0.17	+0.2
4,216,909	-	aceK	b4016	0.17	+0.1
4,217,001	-	aceK	b4016	0.22	-0.7
4,217,011	+	aceK	b4016	0.23	+0.9
4,217,030	-	aceK	b4016	0.24	-0.9
4,217,067	-	aceK	b4016	0.26	-1.0
4,217,067	-	aceK	b4016	0.26	-1.2
4,217,182	-	aceK	b4016	0.32	+0.3
4,217,417	-	aceK	b4016	0.46	+0.7
4,217,417	-	aceK	b4016	0.46	+0.7
4,217,538	+	aceK	b4016	0.53	+0.5
4,217,561	-	aceK	b4016	0.54	-1.4
4,217,670	+	aceK	b4016	0.61	+0.7
4,217,936	-	aceK	b4016	0.76	-1.2
4,217,938	-	aceK	b4016	0.76	+0.4
4,217,974	+	aceK	b4016	0.78	-0.5
4,217,974	+	aceK	b4016	0.78	-1.2
4,217,995	+	aceK	b4016	0.79	+0.7
4,218,097	+	aceK	b4016	0.85	+0.5
4,218,097	+	aceK	b4016	0.85	+0.8
4,218,110	-	aceK	b4016	0.86	+2.1
4,218,110	-	aceK	b4016	0.86	+0.4
4,218,131	+	aceK	b4016	0.87	+0.7
4,218,131	+	aceK	b4016	0.87	+0.6
4,218,196	+				-0.1
4,218,211	+				+0.6
4,218,211	+				+0.3
4,218,243	-				+1.5
4,218,243	-				+0.3
4,218,245	+				-0.3
4,218,245	+				+0.2
4,218,245	+				+0.3
4,218,253	-				+0.3
4,218,258	+				-0.5
4,218,258	+				-0.9
4,218,268	-				+0.5
4,218,275	+				+0.5
4,218,275	-				+0.3
4,218,312	-				-0.9
4,218,312	-				-1.1
4,218,315	+				+1.2
4,218,315	+				+1.3
4,218,315	+				+0.5
4,218,315	+				-0.1
4,218,322	+				+0.4
4,218,326	+				+0.9
4,218,326	+				+0.8
4,218,333	+				-0.5
4,218,333	+				-0.7
4,218,334	+				-1.0
4,218,341	-				+1.1
4,218,342	-				+0.5
4,218,382	+				-0.9
4,218,389	+				-0.1
4,218,389	+				+1.3
4,218,394	+				+0.7
4,218,394	+				+0.3
4,218,398	+				-0.7
4,218,398	+				+0.0
4,218,414	+				+1.4
4,218,414	+				+0.1
4,218,560	+	arpA	b4017	0.11	+0.3
4,218,560	+	arpA	b4017	0.11	-0.0
4,218,560	+	arpA	b4017	0.11	-1.1
4,218,560	+	arpA	b4017	0.11	+1.3
4,218,560	+	arpA	b4017	0.11	+0.0
4,218,568	-	arpA	b4017	0.11	-3.5
4,218,569	+	arpA	b4017	0.11	-0.0
4,218,640	+	arpA	b4017	0.14	+0.5
4,218,640	+	arpA	b4017	0.14	+0.3
4,218,777	-	arpA	b4017	0.21	+0.6
4,218,777	-	arpA	b4017	0.21	-0.0
4,218,777	-	arpA	b4017	0.21	-0.2
4,218,789	-	arpA	b4017	0.21	-0.3
4,218,794	-	arpA	b4017	0.21	+0.6
4,218,901	-	arpA	b4017	0.26	-1.2
4,218,976	-	arpA	b4017	0.30	+1.1