Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_4633

Experiment: L-Glutamine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_4631 and PfGW456L13_4632 are separated by 87 nucleotidesPfGW456L13_4632 and PfGW456L13_4633 are separated by 372 nucleotidesPfGW456L13_4633 and PfGW456L13_4634 are separated by 194 nucleotides PfGW456L13_4631 - UPF0225 protein YchJ, at 5,168,528 to 5,169,004 _4631 PfGW456L13_4632 - Conserved secreted protein, at 5,169,092 to 5,169,586 _4632 PfGW456L13_4633 - Isochorismatase (EC 3.3.2.1), at 5,169,959 to 5,170,516 _4633 PfGW456L13_4634 - Penicillin acylase (EC 3.5.1.11), at 5,170,711 to 5,173,161 _4634 Position (kb) 5169 5170 5171Strain fitness (log2 ratio) -2 -1 0 1at 5168.991 kb on - strandat 5169.002 kb on + strandat 5169.002 kb on + strandat 5169.002 kb on + strandat 5169.003 kb on - strandat 5169.003 kb on - strandat 5169.003 kb on - strandat 5169.003 kb on - strandat 5169.003 kb on - strandat 5169.003 kb on - strandat 5169.005 kb on + strandat 5169.005 kb on + strandat 5169.005 kb on + strandat 5169.005 kb on + strandat 5169.005 kb on + strandat 5169.005 kb on + strandat 5169.005 kb on + strandat 5169.005 kb on + strandat 5169.005 kb on + strandat 5169.005 kb on + strandat 5169.006 kb on - strandat 5169.006 kb on - strandat 5169.006 kb on - strandat 5169.006 kb on - strandat 5169.006 kb on - strandat 5169.006 kb on - strandat 5169.006 kb on - strandat 5169.006 kb on - strandat 5169.062 kb on + strandat 5169.062 kb on + strandat 5169.063 kb on - strandat 5169.063 kb on - strandat 5169.350 kb on + strand, within PfGW456L13_4632at 5169.389 kb on + strand, within PfGW456L13_4632at 5169.389 kb on + strand, within PfGW456L13_4632at 5169.389 kb on + strand, within PfGW456L13_4632at 5169.390 kb on - strand, within PfGW456L13_4632at 5169.390 kb on - strand, within PfGW456L13_4632at 5169.400 kb on - strand, within PfGW456L13_4632at 5169.505 kb on + strand, within PfGW456L13_4632at 5169.505 kb on + strand, within PfGW456L13_4632at 5169.505 kb on + strand, within PfGW456L13_4632at 5169.506 kb on - strand, within PfGW456L13_4632at 5169.507 kb on + strand, within PfGW456L13_4632at 5169.507 kb on + strand, within PfGW456L13_4632at 5169.507 kb on + strand, within PfGW456L13_4632at 5169.507 kb on + strand, within PfGW456L13_4632at 5169.507 kb on + strand, within PfGW456L13_4632at 5169.507 kb on + strand, within PfGW456L13_4632at 5169.507 kb on + strandat 5169.507 kb on + strand, within PfGW456L13_4632at 5169.507 kb on + strand, within PfGW456L13_4632at 5169.507 kb on + strand, within PfGW456L13_4632at 5169.507 kb on + strand, within PfGW456L13_4632at 5169.507 kb on + strand, within PfGW456L13_4632at 5169.507 kb on + strand, within PfGW456L13_4632at 5169.507 kb on + strand, within PfGW456L13_4632at 5169.507 kb on + strand, within PfGW456L13_4632at 5169.508 kb on - strand, within PfGW456L13_4632at 5169.508 kb on - strand, within PfGW456L13_4632at 5169.508 kb on - strand, within PfGW456L13_4632at 5169.508 kb on - strand, within PfGW456L13_4632at 5169.508 kb on - strand, within PfGW456L13_4632at 5169.508 kb on - strand, within PfGW456L13_4632at 5169.508 kb on - strand, within PfGW456L13_4632at 5169.508 kb on - strand, within PfGW456L13_4632at 5169.508 kb on - strand, within PfGW456L13_4632at 5169.508 kb on - strand, within PfGW456L13_4632at 5169.508 kb on - strand, within PfGW456L13_4632at 5169.508 kb on - strand, within PfGW456L13_4632at 5169.508 kb on - strand, within PfGW456L13_4632at 5169.508 kb on - strand, within PfGW456L13_4632at 5169.521 kb on + strand, within PfGW456L13_4632at 5169.521 kb on + strand, within PfGW456L13_4632at 5169.521 kb on + strand, within PfGW456L13_4632at 5169.521 kb on + strand, within PfGW456L13_4632at 5169.521 kb on + strand, within PfGW456L13_4632at 5169.522 kb on - strand, within PfGW456L13_4632at 5169.522 kb on - strand, within PfGW456L13_4632at 5169.522 kb on - strand, within PfGW456L13_4632at 5169.522 kb on - strand, within PfGW456L13_4632at 5169.549 kb on + strandat 5169.550 kb on - strandat 5169.565 kb on - strandat 5169.917 kb on - strandat 5169.949 kb on + strandat 5169.974 kb on + strandat 5169.974 kb on + strandat 5169.974 kb on + strandat 5169.975 kb on - strandat 5169.975 kb on - strandat 5170.003 kb on - strandat 5170.003 kb on - strandat 5170.087 kb on + strand, within PfGW456L13_4633at 5170.088 kb on - strand, within PfGW456L13_4633at 5170.114 kb on + strand, within PfGW456L13_4633at 5170.114 kb on + strandat 5170.114 kb on + strand, within PfGW456L13_4633at 5170.115 kb on - strand, within PfGW456L13_4633at 5170.115 kb on - strand, within PfGW456L13_4633at 5170.435 kb on + strand, within PfGW456L13_4633at 5170.599 kb on + strandat 5170.618 kb on + strandat 5170.618 kb on + strandat 5170.618 kb on + strandat 5170.626 kb on + strandat 5170.627 kb on - strandat 5170.627 kb on - strandat 5170.663 kb on - strandat 5170.663 kb on - strandat 5170.663 kb on - strandat 5170.691 kb on - strandat 5170.691 kb on - strandat 5170.728 kb on + strandat 5170.729 kb on - strandat 5170.729 kb on - strandat 5170.838 kb on + strandat 5170.946 kb on - strandat 5171.050 kb on + strand, within PfGW456L13_4634at 5171.050 kb on + strand, within PfGW456L13_4634at 5171.092 kb on + strand, within PfGW456L13_4634at 5171.092 kb on + strand, within PfGW456L13_4634at 5171.092 kb on + strand, within PfGW456L13_4634at 5171.092 kb on + strand, within PfGW456L13_4634at 5171.092 kb on + strand, within PfGW456L13_4634at 5171.093 kb on - strand, within PfGW456L13_4634at 5171.093 kb on - strand, within PfGW456L13_4634at 5171.093 kb on - strand, within PfGW456L13_4634at 5171.093 kb on - strand, within PfGW456L13_4634at 5171.093 kb on - strand, within PfGW456L13_4634at 5171.093 kb on - strand, within PfGW456L13_4634at 5171.134 kb on + strand, within PfGW456L13_4634at 5171.134 kb on + strand, within PfGW456L13_4634at 5171.134 kb on + strand, within PfGW456L13_4634at 5171.135 kb on - strand, within PfGW456L13_4634at 5171.135 kb on - strand, within PfGW456L13_4634at 5171.135 kb on - strand, within PfGW456L13_4634at 5171.135 kb on - strand, within PfGW456L13_4634at 5171.155 kb on + strand, within PfGW456L13_4634at 5171.155 kb on + strand, within PfGW456L13_4634at 5171.207 kb on - strand, within PfGW456L13_4634at 5171.207 kb on - strand, within PfGW456L13_4634at 5171.218 kb on + strand, within PfGW456L13_4634at 5171.218 kb on + strand, within PfGW456L13_4634at 5171.306 kb on + strand, within PfGW456L13_4634at 5171.306 kb on + strand, within PfGW456L13_4634at 5171.424 kb on - strand, within PfGW456L13_4634

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamine (C)
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5,168,991 - -1.2
5,169,002 + +1.0
5,169,002 + +0.8
5,169,002 + -0.4
5,169,003 - +0.2
5,169,003 - +0.6
5,169,003 - -1.5
5,169,003 - +0.1
5,169,003 - -0.1
5,169,003 - -0.6
5,169,005 + +1.1
5,169,005 + -1.5
5,169,005 + +0.9
5,169,005 + -0.3
5,169,005 + -0.1
5,169,005 + +1.0
5,169,005 + -0.1
5,169,005 + +0.9
5,169,005 + -0.3
5,169,005 + -0.1
5,169,006 - -0.7
5,169,006 - +1.0
5,169,006 - -0.4
5,169,006 - -1.3
5,169,006 - +0.0
5,169,006 - +1.5
5,169,006 - -0.7
5,169,006 - +0.5
5,169,062 + -0.9
5,169,062 + -1.3
5,169,063 - +0.5
5,169,063 - +0.7
5,169,350 + PfGW456L13_4632 0.52 +0.7
5,169,389 + PfGW456L13_4632 0.60 -0.1
5,169,389 + PfGW456L13_4632 0.60 +1.5
5,169,389 + PfGW456L13_4632 0.60 -0.6
5,169,390 - PfGW456L13_4632 0.60 +0.8
5,169,390 - PfGW456L13_4632 0.60 +0.2
5,169,400 - PfGW456L13_4632 0.62 -0.6
5,169,505 + PfGW456L13_4632 0.83 +0.7
5,169,505 + PfGW456L13_4632 0.83 +1.1
5,169,505 + PfGW456L13_4632 0.83 -0.0
5,169,506 - PfGW456L13_4632 0.84 -0.5
5,169,507 + PfGW456L13_4632 0.84 -0.1
5,169,507 + PfGW456L13_4632 0.84 -1.4
5,169,507 + PfGW456L13_4632 0.84 -2.6
5,169,507 + PfGW456L13_4632 0.84 +0.7
5,169,507 + PfGW456L13_4632 0.84 +1.3
5,169,507 + PfGW456L13_4632 0.84 +0.4
5,169,507 + -2.3
5,169,507 + PfGW456L13_4632 0.84 +0.2
5,169,507 + PfGW456L13_4632 0.84 -0.3
5,169,507 + PfGW456L13_4632 0.84 +1.1
5,169,507 + PfGW456L13_4632 0.84 +0.1
5,169,507 + PfGW456L13_4632 0.84 -0.5
5,169,507 + PfGW456L13_4632 0.84 -0.5
5,169,507 + PfGW456L13_4632 0.84 -0.2
5,169,507 + PfGW456L13_4632 0.84 -0.6
5,169,508 - PfGW456L13_4632 0.84 -0.1
5,169,508 - PfGW456L13_4632 0.84 -0.1
5,169,508 - PfGW456L13_4632 0.84 +0.4
5,169,508 - PfGW456L13_4632 0.84 -0.3
5,169,508 - PfGW456L13_4632 0.84 +0.2
5,169,508 - PfGW456L13_4632 0.84 -0.0
5,169,508 - PfGW456L13_4632 0.84 -0.5
5,169,508 - PfGW456L13_4632 0.84 -0.5
5,169,508 - PfGW456L13_4632 0.84 -0.2
5,169,508 - PfGW456L13_4632 0.84 -0.0
5,169,508 - PfGW456L13_4632 0.84 +0.1
5,169,508 - PfGW456L13_4632 0.84 -0.0
5,169,508 - PfGW456L13_4632 0.84 +0.9
5,169,508 - PfGW456L13_4632 0.84 +0.5
5,169,521 + PfGW456L13_4632 0.87 -0.0
5,169,521 + PfGW456L13_4632 0.87 -0.2
5,169,521 + PfGW456L13_4632 0.87 +0.3
5,169,521 + PfGW456L13_4632 0.87 -0.2
5,169,521 + PfGW456L13_4632 0.87 +1.1
5,169,522 - PfGW456L13_4632 0.87 -0.6
5,169,522 - PfGW456L13_4632 0.87 +1.5
5,169,522 - PfGW456L13_4632 0.87 -0.0
5,169,522 - PfGW456L13_4632 0.87 +0.6
5,169,549 + -0.3
5,169,550 - -0.4
5,169,565 - +0.0
5,169,917 - +0.1
5,169,949 + -0.1
5,169,974 + -2.3
5,169,974 + -0.1
5,169,974 + -0.5
5,169,975 - +0.3
5,169,975 - +0.2
5,170,003 - +1.1
5,170,003 - +0.7
5,170,087 + PfGW456L13_4633 0.23 -0.7
5,170,088 - PfGW456L13_4633 0.23 -0.1
5,170,114 + PfGW456L13_4633 0.28 +0.3
5,170,114 + +1.2
5,170,114 + PfGW456L13_4633 0.28 -0.4
5,170,115 - PfGW456L13_4633 0.28 -0.3
5,170,115 - PfGW456L13_4633 0.28 +0.0
5,170,435 + PfGW456L13_4633 0.85 -1.6
5,170,599 + +0.7
5,170,618 + -1.7
5,170,618 + +0.6
5,170,618 + +0.9
5,170,626 + -0.7
5,170,627 - -0.6
5,170,627 - -0.2
5,170,663 - +0.5
5,170,663 - -0.2
5,170,663 - +0.0
5,170,691 - +0.1
5,170,691 - +0.2
5,170,728 + -0.7
5,170,729 - +0.5
5,170,729 - -0.1
5,170,838 + +0.5
5,170,946 - +1.3
5,171,050 + PfGW456L13_4634 0.14 +0.6
5,171,050 + PfGW456L13_4634 0.14 -1.9
5,171,092 + PfGW456L13_4634 0.16 -0.2
5,171,092 + PfGW456L13_4634 0.16 -1.3
5,171,092 + PfGW456L13_4634 0.16 -0.2
5,171,092 + PfGW456L13_4634 0.16 +0.9
5,171,092 + PfGW456L13_4634 0.16 +0.3
5,171,093 - PfGW456L13_4634 0.16 -0.6
5,171,093 - PfGW456L13_4634 0.16 +0.4
5,171,093 - PfGW456L13_4634 0.16 -0.3
5,171,093 - PfGW456L13_4634 0.16 -0.6
5,171,093 - PfGW456L13_4634 0.16 +0.6
5,171,093 - PfGW456L13_4634 0.16 +0.8
5,171,134 + PfGW456L13_4634 0.17 +0.5
5,171,134 + PfGW456L13_4634 0.17 +0.7
5,171,134 + PfGW456L13_4634 0.17 +0.4
5,171,135 - PfGW456L13_4634 0.17 +0.5
5,171,135 - PfGW456L13_4634 0.17 +0.3
5,171,135 - PfGW456L13_4634 0.17 -0.4
5,171,135 - PfGW456L13_4634 0.17 -0.9
5,171,155 + PfGW456L13_4634 0.18 +0.0
5,171,155 + PfGW456L13_4634 0.18 -1.0
5,171,207 - PfGW456L13_4634 0.20 +0.5
5,171,207 - PfGW456L13_4634 0.20 +0.2
5,171,218 + PfGW456L13_4634 0.21 +0.0
5,171,218 + PfGW456L13_4634 0.21 -0.2
5,171,306 + PfGW456L13_4634 0.24 +0.5
5,171,306 + PfGW456L13_4634 0.24 +0.8
5,171,424 - PfGW456L13_4634 0.29 +0.2

Or see this region's nucleotide sequence