Strain Fitness in Pseudomonas fluorescens SBW25 around PFLU_RS31030

Experiment: acetate (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	acetate (C)
4,942,911	+				+1.7
4,942,911	+				-1.8
4,942,912	-				-0.9
4,942,912	-				-0.3
4,942,928	+				+1.3
4,942,928	+				-3.1
4,942,928	+				+1.8
4,942,929	-				-0.8
4,942,929	-				+0.5
4,942,965	+				-1.4
4,942,965	+				+1.4
4,942,966	-				-0.6
4,942,980	-				+0.7
4,942,985	+				-0.8
4,942,985	+				+1.1
4,942,985	+				+2.1
4,942,985	+				+1.3
4,942,985	+				+0.4
4,943,015	+				+0.3
4,943,016	-				+1.1
4,943,016	-				+1.9
4,943,245	+				-1.8
4,943,245	+				+1.0
4,943,246	-				+1.9
4,943,246	-				-2.4
4,943,260	+				+0.1
4,943,260	+				+0.9
4,943,260	+				-1.9
4,943,260	+				-0.4
4,943,260	+				+0.1
4,943,260	+				+0.6
4,943,260	+				-1.4
4,943,261	-				+1.0
4,943,261	-				+1.6
4,943,261	-				+1.5
4,943,261	-				+1.5
4,943,261	-				-1.0
4,943,262	+				-1.9
4,943,263	-				+0.5
4,943,263	-				-0.6
4,943,263	-				+0.9
4,943,277	-				-0.6
4,943,362	+				-2.1
4,943,362	+				+0.3
4,943,363	-				+2.0
4,943,417	+		PFLU_RS21950	0.10	+1.2
4,943,417	+		PFLU_RS21950	0.10	-1.6
4,943,417	+		PFLU_RS21950	0.10	-2.3
4,943,418	-		PFLU_RS21950	0.10	-0.1
4,943,418	-		PFLU_RS21950	0.10	+2.9
4,943,493	+		PFLU_RS21950	0.35	-1.0
4,943,493	+		PFLU_RS21950	0.35	+1.4
4,943,493	+		PFLU_RS21950	0.35	-1.6
4,943,494	-		PFLU_RS21950	0.35	-1.3
4,943,494	-		PFLU_RS21950	0.35	+2.1
4,943,494	-		PFLU_RS21950	0.35	-0.1
4,943,494	-		PFLU_RS21950	0.35	+2.0
4,943,494	-		PFLU_RS21950	0.35	-1.7
4,943,522	+		PFLU_RS21950	0.44	-1.9
4,943,722	-				+1.0
4,943,741	+				+1.6
4,943,742	-				+1.2
4,943,832	+		PFLU_RS31030	0.30	+1.2
4,943,833	-		PFLU_RS31030	0.30	+0.9
4,943,833	-		PFLU_RS31030	0.30	-2.4
4,943,833	-		PFLU_RS31030	0.30	-0.7
4,943,888	-		PFLU_RS31030	0.44	-2.1
4,943,972	+		PFLU_RS31030	0.66	+0.9
4,943,972	+		PFLU_RS31030	0.66	+0.3
4,943,972	+		PFLU_RS31030	0.66	+1.1
4,943,972	+		PFLU_RS31030	0.66	+1.5
4,943,972	+		PFLU_RS31030	0.66	+1.2
4,943,973	-		PFLU_RS31030	0.66	+1.1
4,943,973	-		PFLU_RS31030	0.66	-1.4
4,943,973	-		PFLU_RS31030	0.66	+0.8
4,943,973	-		PFLU_RS31030	0.66	-2.4
4,943,973	-		PFLU_RS31030	0.66	+0.9
4,943,973	-		PFLU_RS31030	0.66	-1.6
4,943,973	-		PFLU_RS31030	0.66	+0.2
4,943,973	-		PFLU_RS31030	0.66	+2.6
4,943,976	+		PFLU_RS31030	0.67	+1.7
4,943,976	+		PFLU_RS31030	0.67	-0.9
4,943,976	+		PFLU_RS31030	0.67	+0.0
4,943,976	+		PFLU_RS31030	0.67	-0.3
4,943,976	+		PFLU_RS31030	0.67	+0.1
4,943,976	+		PFLU_RS31030	0.67	+0.0
4,943,976	+		PFLU_RS31030	0.67	+1.0
4,943,976	+		PFLU_RS31030	0.67	+0.8
4,943,976	+		PFLU_RS31030	0.67	-0.3
4,943,977	-		PFLU_RS31030	0.67	-2.8
4,943,977	-		PFLU_RS31030	0.67	-2.0
4,943,977	-		PFLU_RS31030	0.67	-1.6
4,943,977	-		PFLU_RS31030	0.67	+1.0
4,943,977	-		PFLU_RS31030	0.67	+0.9
4,943,977	-		PFLU_RS31030	0.67	+0.6
4,943,977	-		PFLU_RS31030	0.67	-1.7
4,943,977	-		PFLU_RS31030	0.67	+0.6
4,943,977	-		PFLU_RS31030	0.67	-1.1
4,943,977	-		PFLU_RS31030	0.67	+0.2
4,943,980	+		PFLU_RS31030	0.68	+0.8
4,943,980	+		PFLU_RS31030	0.68	+2.8
4,943,980	+		PFLU_RS31030	0.68	+0.5
4,943,980	+		PFLU_RS31030	0.68	+0.6
4,943,980	+		PFLU_RS31030	0.68	+3.5
4,943,980	+		PFLU_RS31030	0.68	+0.7
4,943,980	+		PFLU_RS31030	0.68	-3.0
4,943,981	-		PFLU_RS31030	0.68	-2.4
4,943,981	-		PFLU_RS31030	0.68	-0.8
4,943,981	-		PFLU_RS31030	0.68	-0.4
4,944,003	-		PFLU_RS31030	0.73	+1.9
4,944,007	+		PFLU_RS31030	0.74	+1.0
4,944,007	+		PFLU_RS31030	0.74	+0.3
4,944,007	+		PFLU_RS31030	0.74	+0.6
4,944,008	-		PFLU_RS31030	0.75	+1.8
4,944,008	-		PFLU_RS31030	0.75	-0.4
4,944,008	-		PFLU_RS31030	0.75	+0.1
4,944,008	-		PFLU_RS31030	0.75	-1.9
4,944,008	-		PFLU_RS31030	0.75	+2.2
4,944,008	-		PFLU_RS31030	0.75	+0.2
4,944,088	-				-0.8
4,944,119	+				+0.3
4,944,119	+				-2.4
4,944,131	+				+1.1
4,944,131	+				-0.7
4,944,131	+				-1.6
4,944,132	-				+0.5
4,944,132	-				+2.2
4,944,132	-				-1.7
4,944,132	-				-0.2
4,944,134	+				+1.4
4,944,134	+				-1.7
4,944,134	+				+1.3
4,944,134	+				+2.4
4,944,134	+				-2.3
4,944,134	+				+0.1
4,944,134	+				+0.2
4,944,134	+				-0.1
4,944,134	+				-1.9
4,944,134	+				-1.4
4,944,134	+				+1.5
4,944,134	+				+1.1
4,944,135	-				+0.3
4,944,135	-				+0.3
4,944,135	-				+1.0
4,944,135	-				+3.5
4,944,135	-				+1.8
4,944,135	-				+1.6
4,944,135	-				-0.6
4,944,135	-				-1.1
4,944,135	-				-2.1
4,944,135	-				+0.0
4,944,135	-				-1.7
4,944,135	-				+2.7
4,944,135	-				+0.6
4,944,143	+				-0.6
4,944,149	+				-0.4
4,944,150	-				-1.5
4,944,150	-				+3.2
4,944,219	-		PFLU_RS21955	0.38	+1.2
4,944,219	-		PFLU_RS21955	0.38	+0.6
4,944,294	+		PFLU_RS21955	0.72	-0.7
4,944,294	+		PFLU_RS21955	0.72	+1.4
4,944,294	+		PFLU_RS21955	0.72	-0.5
4,944,294	+		PFLU_RS21955	0.72	+0.9
4,944,295	-		PFLU_RS21955	0.72	+3.5
4,944,295	-		PFLU_RS21955	0.72	+1.3
4,944,332	+		PFLU_RS21955	0.89	-0.9
4,944,332	+		PFLU_RS21955	0.89	-1.4
4,944,333	-		PFLU_RS21955	0.89	-0.3
4,944,333	-		PFLU_RS21955	0.89	-1.1
4,944,333	-		PFLU_RS21955	0.89	-0.3
4,944,378	+				-0.3
4,944,394	-				+0.4
4,944,424	+				-2.1
4,944,424	+				+1.3
4,944,424	+				-0.6
4,944,424	+				+0.2
4,944,425	-				+1.5
4,944,444	-				-0.3
4,944,453	+				+0.8
4,944,457	+				+0.6
4,944,457	+				-0.9
4,944,457	+				+1.8
4,944,459	+				+1.4
4,944,460	-				+0.1
4,944,466	+				+0.0
4,944,473	-				-2.3
4,944,504	+				-1.1
4,944,505	-				-0.2
4,944,515	+				-0.1
4,944,634	+				-1.8
4,944,634	+				-1.1
4,944,665	+				-0.5
4,944,665	+				+1.9
4,944,665	+				+2.0
4,944,665	+				+1.1
4,944,665	+				+1.6
4,944,666	-				+0.4
4,944,666	-				+0.2
4,944,666	-				+0.8
4,944,684	+		PFLU_RS21960	0.10	+1.3
4,944,684	+		PFLU_RS21960	0.10	+1.4
4,944,684	+		PFLU_RS21960	0.10	-3.1
4,944,684	+		PFLU_RS21960	0.10	+1.9
4,944,684	+		PFLU_RS21960	0.10	-1.8
4,944,684	+		PFLU_RS21960	0.10	-1.1
4,944,684	+		PFLU_RS21960	0.10	+1.1
4,944,684	+		PFLU_RS21960	0.10	+1.7
4,944,685	-		PFLU_RS21960	0.10	+0.3
4,944,685	-		PFLU_RS21960	0.10	+0.9
4,944,685	-		PFLU_RS21960	0.10	+0.9
4,944,689	+		PFLU_RS21960	0.11	-0.4
4,944,689	+		PFLU_RS21960	0.11	+3.4
4,944,689	+		PFLU_RS21960	0.11	+1.2
4,944,690	-		PFLU_RS21960	0.11	+2.0
4,944,690	-		PFLU_RS21960	0.11	+0.1
4,944,690	-		PFLU_RS21960	0.11	-2.1
4,944,794	+		PFLU_RS21960	0.33	+1.0
4,944,794	+		PFLU_RS21960	0.33	+0.7
4,944,795	-		PFLU_RS21960	0.33	+1.0
4,944,825	+		PFLU_RS21960	0.39	-1.6
4,944,836	+		PFLU_RS21960	0.42	+1.9
4,944,836	+		PFLU_RS21960	0.42	+1.6
4,944,836	+		PFLU_RS21960	0.42	+0.2
4,944,836	+		PFLU_RS21960	0.42	-0.1
4,944,837	-		PFLU_RS21960	0.42	+2.4
4,944,837	-		PFLU_RS21960	0.42	+1.3
4,944,928	-		PFLU_RS21960	0.61	+2.9
4,944,939	-		PFLU_RS21960	0.63	-0.6
4,945,021	+		PFLU_RS21960	0.80	+1.7
4,945,021	+		PFLU_RS21960	0.80	+3.3
4,945,022	-		PFLU_RS21960	0.80	-0.9
4,945,035	+		PFLU_RS21960	0.83	+1.7
4,945,036	-		PFLU_RS21960	0.83	-1.7