Strain Fitness in Pseudomonas fluorescens SBW25 around PFLU_RS28840

Experiment: acetate (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	acetate (C)
6,412,382	+				+0.9
6,412,382	+				+1.6
6,412,383	-				+2.3
6,412,383	-				+0.6
6,412,383	-				+1.9
6,412,445	+		PFLU_RS28835	0.15	+1.6
6,412,622	+		PFLU_RS28835	0.33	-2.0
6,412,622	+		PFLU_RS28835	0.33	-1.0
6,412,714	+		PFLU_RS28835	0.43	-0.0
6,412,793	+		PFLU_RS28835	0.51	-2.3
6,412,794	-		PFLU_RS28835	0.51	-1.0
6,412,794	-		PFLU_RS28835	0.51	+1.7
6,412,794	-		PFLU_RS28835	0.51	-1.2
6,412,794	-		PFLU_RS28835	0.51	+1.1
6,412,794	-		PFLU_RS28835	0.51	-0.2
6,412,822	+		PFLU_RS28835	0.54	+2.1
6,412,822	+		PFLU_RS28835	0.54	-1.6
6,412,822	+		PFLU_RS28835	0.54	+0.6
6,412,822	+		PFLU_RS28835	0.54	+1.9
6,412,822	+		PFLU_RS28835	0.54	-2.7
6,412,823	-		PFLU_RS28835	0.54	-0.4
6,412,823	-		PFLU_RS28835	0.54	+1.0
6,412,823	-		PFLU_RS28835	0.54	+0.1
6,412,823	-		PFLU_RS28835	0.54	-0.6
6,412,823	-		PFLU_RS28835	0.54	-2.8
6,412,832	+		PFLU_RS28835	0.55	-0.0
6,412,833	-		PFLU_RS28835	0.55	+0.3
6,412,833	-		PFLU_RS28835	0.55	+0.7
6,412,833	-		PFLU_RS28835	0.55	-0.1
6,412,833	-		PFLU_RS28835	0.55	-1.8
6,412,833	-		PFLU_RS28835	0.55	+2.0
6,412,833	-		PFLU_RS28835	0.55	+2.0
6,412,833	-		PFLU_RS28835	0.55	+2.8
6,412,833	-		PFLU_RS28835	0.55	-0.2
6,412,833	-		PFLU_RS28835	0.55	-2.2
6,412,833	-		PFLU_RS28835	0.55	+0.9
6,412,949	+		PFLU_RS28835	0.67	+1.2
6,412,949	+		PFLU_RS28835	0.67	-2.9
6,412,950	-		PFLU_RS28835	0.67	-0.7
6,412,958	+		PFLU_RS28835	0.68	-0.6
6,412,958	+		PFLU_RS28835	0.68	-3.1
6,412,958	+		PFLU_RS28835	0.68	-0.0
6,412,958	+		PFLU_RS28835	0.68	+0.3
6,412,958	+		PFLU_RS28835	0.68	-2.0
6,412,958	+		PFLU_RS28835	0.68	-0.0
6,412,958	+		PFLU_RS28835	0.68	-1.7
6,412,958	+		PFLU_RS28835	0.68	+1.7
6,412,959	-		PFLU_RS28835	0.68	+0.8
6,412,959	-		PFLU_RS28835	0.68	+2.8
6,413,154	-		PFLU_RS28835	0.88	-1.0
6,413,154	-		PFLU_RS28835	0.88	-0.6
6,413,285	-				+0.3
6,413,285	-				-0.0
6,413,285	-				+0.1
6,413,285	-				+1.1
6,413,285	-				-2.1
6,413,333	+				+1.2
6,413,333	+				-1.4
6,413,342	+				+1.2
6,413,342	+				+1.0
6,413,342	+				+1.9
6,413,343	-				+0.1
6,413,343	-				-1.4
6,413,343	-				+1.1
6,413,343	-				-0.7
6,413,343	-				+0.8
6,413,343	-				+1.0
6,413,343	-				-1.7
6,413,343	-				-2.8
6,413,343	-				+0.9
6,413,345	+				+1.2
6,413,346	-				+0.8
6,413,346	-				+0.8
6,413,346	-				-0.2
6,413,346	-				+0.4
6,413,346	-				-1.1
6,413,446	-		PFLU_RS28840	0.14	+1.4
6,413,521	-		PFLU_RS28840	0.27	+1.4
6,413,548	+		PFLU_RS28840	0.31	-1.9
6,413,617	+		PFLU_RS28840	0.43	+1.1
6,413,617	+		PFLU_RS28840	0.43	+1.5
6,413,617	+		PFLU_RS28840	0.43	-2.5
6,413,617	+		PFLU_RS28840	0.43	+2.5
6,413,618	-		PFLU_RS28840	0.43	+2.2
6,413,618	-		PFLU_RS28840	0.43	-2.3
6,413,727	+		PFLU_RS28840	0.61	+0.5
6,413,727	+		PFLU_RS28840	0.61	-0.5
6,413,727	+		PFLU_RS28840	0.61	-1.7
6,413,727	+		PFLU_RS28840	0.61	-1.1
6,413,728	-		PFLU_RS28840	0.61	-1.6
6,413,728	-		PFLU_RS28840	0.61	-2.3
6,413,728	-		PFLU_RS28840	0.61	-2.4
6,413,840	+		PFLU_RS28840	0.80	-1.1
6,413,847	+		PFLU_RS28840	0.81	-0.6
6,413,848	-		PFLU_RS28840	0.82	+0.6
6,413,861	+		PFLU_RS28840	0.84	-1.3
6,413,861	+		PFLU_RS28840	0.84	+0.3
6,413,861	+		PFLU_RS28840	0.84	-1.9
6,413,861	+		PFLU_RS28840	0.84	+0.5
6,413,862	-		PFLU_RS28840	0.84	-0.2
6,413,862	-		PFLU_RS28840	0.84	-0.1
6,413,862	-		PFLU_RS28840	0.84	-1.9
6,413,862	-		PFLU_RS28840	0.84	-0.9
6,413,862	-		PFLU_RS28840	0.84	-2.2
6,413,862	-		PFLU_RS28840	0.84	-1.6
6,413,862	-		PFLU_RS28840	0.84	-0.6
6,413,862	-		PFLU_RS28840	0.84	+0.6
6,413,946	-				+1.8
6,414,024	+				-0.4
6,414,024	+				-0.2
6,414,024	+				+1.6
6,414,025	-				-0.9
6,414,025	-				-0.4
6,414,041	-				+0.9
6,414,097	-				+1.1
6,414,169	+				+0.0
6,414,169	+				-1.1
6,414,169	+				-1.7
6,414,169	+				+0.1
6,414,169	+				+0.5
6,414,169	+				-0.6
6,414,169	+				+2.0
6,414,169	+				-0.4
6,414,169	+				+0.3
6,414,169	+				-0.3
6,414,170	-				-0.2
6,414,170	-				-1.4
6,414,170	-				-2.4
6,414,252	+				+2.3
6,414,252	+				+2.3
6,414,252	+				-1.6
6,414,252	+				-0.1
6,414,252	+				-1.1
6,414,252	+				-1.8
6,414,252	+				-1.0
6,414,252	+				+0.3
6,414,252	+				-2.9
6,414,252	+				-1.6
6,414,253	-				+2.8
6,414,253	-				+0.4
6,414,253	-				+1.8
6,414,253	-				+2.0
6,414,253	-				-0.4
6,414,253	-				+1.3
6,414,253	-				+0.6
6,414,253	-				-0.0
6,414,253	-				-1.0
6,414,253	-				+0.7
6,414,253	-				-0.7
6,414,253	-				+0.6
6,414,253	-				+2.2
6,414,253	-				-2.4
6,414,254	+				-2.0
6,414,293	+				-1.3
6,414,311	+				+0.5
6,414,486	-		PFLU_RS28845	0.35	+1.2
6,414,486	-		PFLU_RS28845	0.35	+1.8
6,414,578	+		PFLU_RS28845	0.49	-0.3
6,414,578	+		PFLU_RS28845	0.49	-1.2
6,414,578	+		PFLU_RS28845	0.49	-0.9
6,414,579	-		PFLU_RS28845	0.50	-1.5
6,414,579	-		PFLU_RS28845	0.50	+0.4
6,414,579	-		PFLU_RS28845	0.50	-2.1
6,414,814	-		PFLU_RS28845	0.86	-0.0
6,414,814	-		PFLU_RS28845	0.86	-0.9
6,414,892	+				-1.2
6,414,892	+				-1.3
6,414,892	+				-0.7
6,414,893	-				-0.1
6,414,893	-				-0.6
6,414,893	-				+0.0
6,414,893	-				-0.2
6,414,893	-				+0.4
6,414,893	-				+0.3
6,414,893	-				+0.9
6,414,893	-				-0.9
6,414,893	-				-1.9
6,414,893	-				+2.3
6,414,923	+				+2.2
6,414,924	-				-0.5
6,414,924	-				-0.4