Strain Fitness in Pseudomonas fluorescens SBW25 around PFLU_RS26455

Experiment: acetate (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	acetate (C)
5,913,864	+				+0.6
5,913,865	-				+0.9
5,913,873	+				-3.0
5,913,877	+				+0.4
5,913,877	+				-0.2
5,913,877	+				-0.8
5,913,877	+				+0.0
5,913,877	+				+1.5
5,913,877	+				-2.4
5,913,877	+				-0.5
5,913,878	-				+0.8
5,913,878	-				-0.1
5,913,878	-				-0.6
5,913,878	-				-0.3
5,913,878	-				+0.2
5,913,878	-				-0.3
5,913,878	-				+0.0
5,913,878	-				+0.6
5,913,896	+				+0.7
5,913,896	+				+0.3
5,913,896	+				-1.4
5,913,896	+				+0.3
5,913,896	+				-3.2
5,913,896	+				-1.4
5,913,896	+				-1.3
5,913,896	+				-2.1
5,913,896	+				-0.9
5,913,897	-				+1.5
5,913,897	-				+0.9
5,913,897	-				+2.1
5,913,897	-				+1.7
5,913,897	-				+0.9
5,913,897	-				+1.8
5,913,897	-				-1.7
5,913,916	+				+0.6
5,913,916	+				-0.8
5,913,916	+				-0.2
5,913,916	+				+0.7
5,913,916	+				+1.2
5,913,916	+				-0.0
5,913,916	+				-1.5
5,913,916	+				-1.7
5,913,916	+				-0.8
5,913,916	+				+0.5
5,913,916	+				-0.5
5,913,917	-				-0.3
5,913,917	-				-0.2
5,913,917	-				-2.6
5,913,917	-				+1.4
5,913,917	-				-0.5
5,913,917	-				+0.6
5,913,917	-				+1.4
5,913,917	-				+1.3
5,913,917	-				-2.1
5,913,917	-				+1.2
5,913,948	+				-0.3
5,913,948	+				+2.8
5,913,949	-				+0.7
5,913,949	-				+0.9
5,913,949	-				-0.5
5,913,949	-				-2.4
5,913,970	+				-2.2
5,913,970	+				+1.3
5,914,090	+				+0.7
5,914,090	+				-1.4
5,914,090	+				+0.0
5,914,091	-				+1.4
5,914,091	-				-1.0
5,914,091	-				+1.4
5,914,094	+				-1.4
5,914,094	+				+0.3
5,914,094	+				+0.7
5,914,094	+				+2.4
5,914,094	+				-0.8
5,914,095	-				-0.2
5,914,095	-				-1.9
5,914,095	-				+1.2
5,914,095	-				+0.7
5,914,095	-				-0.5
5,914,095	-				+2.3
5,914,095	-				+1.9
5,914,095	-				+0.4
5,914,095	-				-1.6
5,914,095	-				+0.2
5,914,095	-				-1.2
5,914,095	-				-0.8
5,914,095	-				-0.5
5,914,149	+				-0.2
5,914,150	-				-0.8
5,914,152	+				+0.5
5,914,152	+				+0.3
5,914,152	+				+0.4
5,914,152	+				+0.6
5,914,153	-				-0.4
5,914,153	-				+2.0
5,914,153	-				-1.1
5,914,153	-				+1.3
5,914,165	+				-0.5
5,914,165	+				+0.2
5,914,165	+				+1.9
5,914,166	-				+0.6
5,914,166	-				+1.9
5,914,166	-				+0.0
5,914,185	+				-0.3
5,914,204	+				+1.1
5,914,215	+				+1.3
5,914,216	-				-0.7
5,914,216	-				-1.7
5,914,283	+				+0.6
5,914,283	+				-1.6
5,914,283	+				+0.9
5,914,284	-				-2.9
5,914,316	+				+0.3
5,914,332	+				-1.3
5,914,332	+				-2.7
5,914,332	+				+0.3
5,914,332	+				-1.6
5,914,332	+				+0.4
5,914,332	+				-1.6
5,914,332	+				+1.0
5,914,332	+				+0.2
5,914,332	+				+1.4
5,914,332	+				-0.1
5,914,333	-				-1.3
5,914,333	-				-0.5
5,914,333	-				-1.4
5,914,333	-				+0.0
5,914,333	-				-1.8
5,914,333	-				-1.6
5,914,333	-				-3.1
5,914,333	-				-1.7
5,914,333	-				-0.2
5,914,333	-				-2.0
5,914,333	-				+1.3
5,914,333	-				+2.6
5,914,333	-				-1.3
5,914,410	+		PFLU_RS26450	0.25	-0.5
5,914,410	+		PFLU_RS26450	0.25	+0.6
5,914,410	+		PFLU_RS26450	0.25	-0.7
5,914,410	+		PFLU_RS26450	0.25	-2.6
5,914,410	+		PFLU_RS26450	0.25	-1.1
5,914,411	-		PFLU_RS26450	0.25	-0.3
5,914,411	-		PFLU_RS26450	0.25	-0.6
5,914,411	-		PFLU_RS26450	0.25	-2.2
5,914,411	-		PFLU_RS26450	0.25	+1.6
5,914,413	+		PFLU_RS26450	0.26	-2.4
5,914,413	+		PFLU_RS26450	0.26	-1.5
5,914,413	+		PFLU_RS26450	0.26	+0.3
5,914,413	+		PFLU_RS26450	0.26	+1.4
5,914,413	+		PFLU_RS26450	0.26	-1.2
5,914,414	-		PFLU_RS26450	0.26	-1.2
5,914,414	-		PFLU_RS26450	0.26	+1.3
5,914,414	-		PFLU_RS26450	0.26	+1.5
5,914,414	-		PFLU_RS26450	0.26	+2.0
5,914,414	-		PFLU_RS26450	0.26	+0.6
5,914,414	-		PFLU_RS26450	0.26	-0.4
5,914,414	-		PFLU_RS26450	0.26	+0.6
5,914,708	+				-2.1
5,914,708	+				+1.7
5,914,709	-				-2.5
5,914,718	+				+3.3
5,914,742	-				+2.7
5,914,939	+		PFLU_RS26455	0.13	+0.8
5,914,939	+		PFLU_RS26455	0.13	+0.0
5,914,940	-		PFLU_RS26455	0.13	+0.5
5,915,171	+		PFLU_RS26455	0.51	-0.7
5,915,171	+		PFLU_RS26455	0.51	+2.6
5,915,172	-		PFLU_RS26455	0.51	+0.5
5,915,458	+				+0.1
5,915,460	+				-0.2
5,915,460	+				-0.7
5,915,460	+				-0.8
5,915,460	+				-1.2
5,915,460	+				-0.1
5,915,460	+				+0.5
5,915,460	+				+1.4
5,915,460	+				+1.0
5,915,460	+				+0.2
5,915,460	+				+1.3
5,915,460	+				-2.8
5,915,461	-				-1.1
5,915,461	-				+2.0
5,915,461	-				-0.5
5,915,461	-				-0.8
5,915,461	-				-0.5
5,915,461	-				+0.5
5,915,461	-				+1.9
5,915,461	-				+0.3
5,915,461	-				-2.1
5,915,461	-				-1.2
5,915,461	-				+1.3
5,915,461	-				-1.6
5,915,461	-				-0.1
5,915,461	-				-3.4
5,915,461	-				-2.1
5,915,461	-				+0.2
5,915,461	-				+1.6
5,915,461	-				+0.9
5,915,461	-				-2.5
5,915,488	+				+1.1
5,915,488	+				+0.3
5,915,489	-				+2.3
5,915,489	-				+0.6
5,915,489	-				-0.8
5,915,496	+				+0.2
5,915,496	+				-0.5
5,915,497	-				+2.9
5,915,497	-				+0.4
5,915,500	-				+2.1
5,915,500	-				-1.8
5,915,500	-				-0.5
5,915,500	-				+2.3
5,915,500	-				+0.5
5,915,500	-				-1.8
5,915,514	+				-0.9
5,915,515	-				+0.6
5,915,515	-				+0.2
5,915,515	-				+0.5
5,915,515	-				+0.9
5,915,547	+				-0.1
5,915,547	+				-0.2
5,915,623	+		PFLU_RS26460	0.23	+1.5
5,915,623	+		PFLU_RS26460	0.23	-0.1
5,915,623	+		PFLU_RS26460	0.23	-0.7
5,915,623	+		PFLU_RS26460	0.23	-1.1
5,915,624	-		PFLU_RS26460	0.23	+1.2
5,915,624	-		PFLU_RS26460	0.23	-1.5
5,915,624	-		PFLU_RS26460	0.23	-0.9
5,915,769	+		PFLU_RS26460	0.54	+1.5
5,915,770	-		PFLU_RS26460	0.54	-1.1
5,915,770	-		PFLU_RS26460	0.54	+0.4
5,915,770	-		PFLU_RS26460	0.54	+2.8
5,915,770	-		PFLU_RS26460	0.54	-3.2
5,915,770	-		PFLU_RS26460	0.54	+2.6
5,915,788	+		PFLU_RS26460	0.58	+1.7
5,915,789	-		PFLU_RS26460	0.58	+0.8
5,915,853	+		PFLU_RS26460	0.71	+0.7
5,915,853	+		PFLU_RS26460	0.71	+2.1
5,915,854	-		PFLU_RS26460	0.71	-0.2
5,915,854	-		PFLU_RS26460	0.71	+2.8
5,915,859	+		PFLU_RS26460	0.73	-0.5
5,915,859	+		PFLU_RS26460	0.73	+1.7
5,915,859	+		PFLU_RS26460	0.73	-1.4
5,915,859	+		PFLU_RS26460	0.73	+0.5
5,915,859	+		PFLU_RS26460	0.73	+0.2
5,915,859	+		PFLU_RS26460	0.73	-0.1
5,915,859	+		PFLU_RS26460	0.73	-1.7
5,915,859	+		PFLU_RS26460	0.73	-2.5
5,915,860	-		PFLU_RS26460	0.73	+2.9
5,915,860	-		PFLU_RS26460	0.73	-1.2
5,915,860	-		PFLU_RS26460	0.73	+0.3
5,915,860	-		PFLU_RS26460	0.73	-0.1
5,915,891	-		PFLU_RS26460	0.79	+0.9
5,915,910	+		PFLU_RS26460	0.83	+0.4
5,915,911	-		PFLU_RS26460	0.83	+0.1
5,915,911	-		PFLU_RS26460	0.83	-1.6
5,915,928	+		PFLU_RS26460	0.87	-1.2
5,915,928	+		PFLU_RS26460	0.87	+1.0
5,915,928	+		PFLU_RS26460	0.87	+1.2
5,915,928	+		PFLU_RS26460	0.87	+0.1
5,915,928	+		PFLU_RS26460	0.87	-1.6
5,915,928	+		PFLU_RS26460	0.87	-0.7
5,915,929	-		PFLU_RS26460	0.87	-0.7
5,915,946	+				-0.1
5,915,946	+				+1.7
5,915,946	+				+1.2
5,915,946	+				+0.2
5,915,946	+				+0.6
5,915,946	+				-0.8
5,915,946	+				+1.1
5,915,947	-				+0.3
5,915,947	-				+0.0
5,915,947	-				-0.0
5,915,947	-				+3.3
5,915,947	-				+0.7
5,915,947	-				-0.5
5,915,947	-				+1.2
5,915,947	-				+2.1
5,915,947	-				+3.3
5,915,947	-				+1.4
5,915,947	-				+0.4
5,915,947	-				-0.1
5,915,949	+				+1.1
5,915,949	+				-1.2
5,915,950	-				-2.1
5,915,950	-				+3.8
5,916,038	+				+0.9
5,916,065	-				-0.2
5,916,153	+				-0.4
5,916,153	+				-2.0
5,916,154	-				+1.9
5,916,325	+		PFLU_RS26465	0.29	+1.1
5,916,325	+		PFLU_RS26465	0.29	+1.2
5,916,325	+		PFLU_RS26465	0.29	-1.7
5,916,326	-		PFLU_RS26465	0.29	+0.5
5,916,326	-		PFLU_RS26465	0.29	+0.2
5,916,326	-		PFLU_RS26465	0.29	+2.3
5,916,435	+		PFLU_RS26465	0.44	-0.6
5,916,435	+		PFLU_RS26465	0.44	-1.2