Experiment: acetate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PFLU_RS24715 and PFLU_RS24720 are separated by 239 nucleotides PFLU_RS24720 and PFLU_RS31065 are separated by 130 nucleotides PFLU_RS31065 and PFLU_RS24730 are separated by 185 nucleotides
PFLU_RS24715: PFLU_RS24715 - PTS system trehalose-specific EIIBC component, at 5,537,893 to 5,539,335
_RS24715
PFLU_RS24720: PFLU_RS24720 - trehalose operon repressor, at 5,539,575 to 5,540,279
_RS24720
PFLU_RS31065: PFLU_RS31065 - helix-turn-helix domain-containing protein, at 5,540,410 to 5,540,655
_RS31065
PFLU_RS24730: PFLU_RS24730 - glutamine-hydrolyzing GMP synthase, at 5,540,841 to 5,542,418
_RS24730
Position (kb) 5539
5540
5541 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 5538.590 kb on + strand, within PFLU_RS24715 at 5538.590 kb on + strand, within PFLU_RS24715 at 5538.590 kb on + strand, within PFLU_RS24715 at 5538.590 kb on + strand, within PFLU_RS24715 at 5538.591 kb on - strand, within PFLU_RS24715 at 5538.591 kb on - strand, within PFLU_RS24715 at 5538.591 kb on - strand, within PFLU_RS24715 at 5538.591 kb on - strand, within PFLU_RS24715 at 5538.591 kb on - strand, within PFLU_RS24715 at 5538.591 kb on - strand, within PFLU_RS24715 at 5538.591 kb on - strand, within PFLU_RS24715 at 5538.591 kb on - strand, within PFLU_RS24715 at 5538.627 kb on - strand, within PFLU_RS24715 at 5538.668 kb on + strand, within PFLU_RS24715 at 5538.668 kb on + strand, within PFLU_RS24715 at 5538.668 kb on + strand, within PFLU_RS24715 at 5538.710 kb on + strand, within PFLU_RS24715 at 5538.710 kb on + strand, within PFLU_RS24715 at 5538.710 kb on + strand, within PFLU_RS24715 at 5538.710 kb on + strand, within PFLU_RS24715 at 5538.710 kb on + strand, within PFLU_RS24715 at 5538.711 kb on - strand, within PFLU_RS24715 at 5538.711 kb on - strand, within PFLU_RS24715 at 5538.711 kb on - strand, within PFLU_RS24715 at 5538.939 kb on + strand, within PFLU_RS24715 at 5539.012 kb on + strand, within PFLU_RS24715 at 5539.109 kb on + strand, within PFLU_RS24715 at 5539.110 kb on - strand, within PFLU_RS24715 at 5539.162 kb on - strand, within PFLU_RS24715 at 5539.322 kb on + strand at 5539.323 kb on - strand at 5539.401 kb on + strand at 5539.419 kb on - strand at 5539.455 kb on + strand at 5539.455 kb on + strand at 5539.455 kb on + strand at 5539.531 kb on + strand at 5539.584 kb on + strand at 5539.584 kb on + strand at 5539.584 kb on + strand at 5539.584 kb on + strand at 5539.584 kb on + strand at 5539.584 kb on + strand at 5539.584 kb on + strand at 5539.584 kb on + strand at 5539.584 kb on + strand at 5539.585 kb on - strand at 5539.585 kb on - strand at 5539.585 kb on - strand at 5539.585 kb on - strand at 5539.585 kb on - strand at 5539.585 kb on - strand at 5539.585 kb on - strand at 5539.585 kb on - strand at 5539.596 kb on + strand at 5539.596 kb on + strand at 5539.596 kb on + strand at 5539.596 kb on + strand at 5539.596 kb on + strand at 5539.596 kb on + strand at 5539.597 kb on - strand at 5539.597 kb on - strand at 5539.597 kb on - strand at 5539.597 kb on - strand at 5539.681 kb on - strand, within PFLU_RS24720 at 5539.681 kb on - strand, within PFLU_RS24720 at 5539.681 kb on - strand, within PFLU_RS24720 at 5539.681 kb on - strand, within PFLU_RS24720 at 5539.681 kb on - strand, within PFLU_RS24720 at 5539.852 kb on + strand, within PFLU_RS24720 at 5539.852 kb on + strand, within PFLU_RS24720 at 5539.852 kb on + strand, within PFLU_RS24720 at 5539.852 kb on + strand, within PFLU_RS24720 at 5539.852 kb on + strand, within PFLU_RS24720 at 5539.852 kb on + strand, within PFLU_RS24720 at 5539.853 kb on - strand, within PFLU_RS24720 at 5539.853 kb on - strand, within PFLU_RS24720 at 5539.853 kb on - strand, within PFLU_RS24720 at 5539.853 kb on - strand, within PFLU_RS24720 at 5539.853 kb on - strand, within PFLU_RS24720 at 5539.853 kb on - strand, within PFLU_RS24720 at 5539.853 kb on - strand, within PFLU_RS24720 at 5539.853 kb on - strand, within PFLU_RS24720 at 5539.853 kb on - strand, within PFLU_RS24720 at 5539.853 kb on - strand, within PFLU_RS24720 at 5539.853 kb on - strand, within PFLU_RS24720 at 5540.052 kb on + strand, within PFLU_RS24720 at 5540.052 kb on + strand, within PFLU_RS24720 at 5540.053 kb on - strand, within PFLU_RS24720 at 5540.053 kb on - strand, within PFLU_RS24720 at 5540.053 kb on - strand, within PFLU_RS24720 at 5540.091 kb on + strand, within PFLU_RS24720 at 5540.091 kb on + strand, within PFLU_RS24720 at 5540.091 kb on + strand, within PFLU_RS24720 at 5540.220 kb on + strand at 5540.221 kb on - strand at 5540.237 kb on + strand at 5540.237 kb on + strand at 5540.237 kb on + strand at 5540.237 kb on + strand at 5540.237 kb on + strand at 5540.237 kb on + strand at 5540.238 kb on - strand at 5540.238 kb on - strand at 5540.238 kb on - strand at 5540.238 kb on - strand at 5540.238 kb on - strand at 5540.238 kb on - strand at 5540.246 kb on + strand at 5540.247 kb on - strand at 5540.247 kb on - strand at 5540.247 kb on - strand at 5540.247 kb on - strand at 5540.283 kb on + strand at 5540.283 kb on + strand at 5540.283 kb on + strand at 5540.283 kb on + strand at 5540.283 kb on + strand at 5540.283 kb on + strand at 5540.283 kb on + strand at 5540.284 kb on - strand at 5540.284 kb on - strand at 5540.284 kb on - strand at 5540.284 kb on - strand at 5540.284 kb on - strand at 5540.284 kb on - strand at 5540.284 kb on - strand at 5540.284 kb on - strand at 5540.284 kb on - strand at 5540.284 kb on - strand at 5540.284 kb on - strand at 5540.391 kb on - strand at 5540.392 kb on + strand at 5540.392 kb on + strand at 5540.392 kb on + strand at 5540.392 kb on + strand at 5540.392 kb on + strand at 5540.392 kb on + strand at 5540.393 kb on - strand at 5540.393 kb on - strand at 5540.393 kb on - strand at 5540.393 kb on - strand at 5540.393 kb on - strand at 5540.393 kb on - strand at 5540.393 kb on - strand at 5540.393 kb on - strand at 5540.411 kb on + strand at 5540.412 kb on - strand at 5540.619 kb on + strand, within PFLU_RS31065 at 5540.619 kb on + strand, within PFLU_RS31065 at 5540.620 kb on - strand, within PFLU_RS31065 at 5540.628 kb on + strand, within PFLU_RS31065 at 5540.672 kb on + strand at 5540.672 kb on + strand at 5540.673 kb on - strand at 5540.673 kb on - strand at 5540.673 kb on - strand at 5540.673 kb on - strand at 5540.685 kb on + strand at 5540.685 kb on + strand at 5540.685 kb on + strand at 5540.686 kb on - strand at 5540.686 kb on - strand at 5540.686 kb on - strand at 5540.686 kb on - strand at 5540.690 kb on - strand at 5540.690 kb on - strand at 5540.690 kb on - strand at 5540.690 kb on - strand at 5540.690 kb on - strand at 5540.710 kb on + strand at 5540.712 kb on + strand at 5540.712 kb on + strand at 5540.712 kb on + strand at 5540.713 kb on - strand at 5540.733 kb on + strand at 5540.733 kb on + strand at 5540.733 kb on + strand at 5540.740 kb on + strand at 5540.741 kb on - strand at 5540.741 kb on - strand at 5540.768 kb on + strand at 5540.768 kb on + strand at 5540.768 kb on + strand at 5540.769 kb on - strand at 5540.769 kb on - strand at 5540.769 kb on - strand at 5540.769 kb on - strand at 5540.769 kb on - strand at 5540.778 kb on - strand at 5540.813 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction acetate (C) remove 5,538,590 + PFLU_RS24715 0.48 +0.4 5,538,590 + PFLU_RS24715 0.48 +1.1 5,538,590 + PFLU_RS24715 0.48 +1.3 5,538,590 + PFLU_RS24715 0.48 +2.0 5,538,591 - PFLU_RS24715 0.48 -0.6 5,538,591 - PFLU_RS24715 0.48 +0.8 5,538,591 - PFLU_RS24715 0.48 +0.9 5,538,591 - PFLU_RS24715 0.48 +1.7 5,538,591 - PFLU_RS24715 0.48 +1.5 5,538,591 - PFLU_RS24715 0.48 -3.6 5,538,591 - PFLU_RS24715 0.48 +0.1 5,538,591 - PFLU_RS24715 0.48 -0.5 5,538,627 - PFLU_RS24715 0.51 +0.6 5,538,668 + PFLU_RS24715 0.54 +2.7 5,538,668 + PFLU_RS24715 0.54 +1.9 5,538,668 + PFLU_RS24715 0.54 +2.4 5,538,710 + PFLU_RS24715 0.57 +0.5 5,538,710 + PFLU_RS24715 0.57 +1.2 5,538,710 + PFLU_RS24715 0.57 +0.6 5,538,710 + PFLU_RS24715 0.57 -0.1 5,538,710 + PFLU_RS24715 0.57 +0.7 5,538,711 - PFLU_RS24715 0.57 -1.2 5,538,711 - PFLU_RS24715 0.57 +2.9 5,538,711 - PFLU_RS24715 0.57 -0.4 5,538,939 + PFLU_RS24715 0.72 -1.9 5,539,012 + PFLU_RS24715 0.78 -1.5 5,539,109 + PFLU_RS24715 0.84 -0.2 5,539,110 - PFLU_RS24715 0.84 -2.6 5,539,162 - PFLU_RS24715 0.88 +2.1 5,539,322 + -2.2 5,539,323 - -0.2 5,539,401 + +0.8 5,539,419 - +0.5 5,539,455 + +1.4 5,539,455 + -0.6 5,539,455 + -0.9 5,539,531 + -2.7 5,539,584 + +0.6 5,539,584 + -1.0 5,539,584 + -0.2 5,539,584 + -2.8 5,539,584 + -1.2 5,539,584 + -3.1 5,539,584 + -1.3 5,539,584 + +0.1 5,539,584 + +0.7 5,539,585 - -0.1 5,539,585 - -1.6 5,539,585 - -1.3 5,539,585 - -1.5 5,539,585 - +0.8 5,539,585 - -1.6 5,539,585 - +1.1 5,539,585 - -2.1 5,539,596 + -1.9 5,539,596 + +0.7 5,539,596 + -1.0 5,539,596 + +1.2 5,539,596 + +0.6 5,539,596 + -0.5 5,539,597 - -1.3 5,539,597 - -0.5 5,539,597 - +2.3 5,539,597 - -1.0 5,539,681 - PFLU_RS24720 0.15 -2.2 5,539,681 - PFLU_RS24720 0.15 -3.0 5,539,681 - PFLU_RS24720 0.15 -1.0 5,539,681 - PFLU_RS24720 0.15 +0.8 5,539,681 - PFLU_RS24720 0.15 +0.1 5,539,852 + PFLU_RS24720 0.39 -2.5 5,539,852 + PFLU_RS24720 0.39 -1.8 5,539,852 + PFLU_RS24720 0.39 -2.0 5,539,852 + PFLU_RS24720 0.39 +0.0 5,539,852 + PFLU_RS24720 0.39 -0.3 5,539,852 + PFLU_RS24720 0.39 -0.3 5,539,853 - PFLU_RS24720 0.39 -0.7 5,539,853 - PFLU_RS24720 0.39 -1.7 5,539,853 - PFLU_RS24720 0.39 -0.4 5,539,853 - PFLU_RS24720 0.39 -1.9 5,539,853 - PFLU_RS24720 0.39 +2.0 5,539,853 - PFLU_RS24720 0.39 -1.0 5,539,853 - PFLU_RS24720 0.39 +0.6 5,539,853 - PFLU_RS24720 0.39 -1.7 5,539,853 - PFLU_RS24720 0.39 -1.3 5,539,853 - PFLU_RS24720 0.39 -2.1 5,539,853 - PFLU_RS24720 0.39 +0.5 5,540,052 + PFLU_RS24720 0.68 -0.3 5,540,052 + PFLU_RS24720 0.68 +1.6 5,540,053 - PFLU_RS24720 0.68 -0.9 5,540,053 - PFLU_RS24720 0.68 +1.1 5,540,053 - PFLU_RS24720 0.68 -3.1 5,540,091 + PFLU_RS24720 0.73 -2.4 5,540,091 + PFLU_RS24720 0.73 -1.1 5,540,091 + PFLU_RS24720 0.73 +2.3 5,540,220 + -2.6 5,540,221 - -0.8 5,540,237 + -0.6 5,540,237 + -2.3 5,540,237 + +1.4 5,540,237 + -2.0 5,540,237 + -1.7 5,540,237 + -0.6 5,540,238 - +0.1 5,540,238 - -0.8 5,540,238 - +0.1 5,540,238 - +1.9 5,540,238 - +0.7 5,540,238 - -0.3 5,540,246 + +1.1 5,540,247 - +1.0 5,540,247 - -2.8 5,540,247 - +0.3 5,540,247 - +1.0 5,540,283 + +0.2 5,540,283 + +0.2 5,540,283 + +0.7 5,540,283 + -2.8 5,540,283 + -2.1 5,540,283 + -2.3 5,540,283 + +0.4 5,540,284 - +0.4 5,540,284 - -2.1 5,540,284 - +1.8 5,540,284 - +1.3 5,540,284 - -0.6 5,540,284 - +0.9 5,540,284 - -3.2 5,540,284 - +1.0 5,540,284 - +1.4 5,540,284 - +1.6 5,540,284 - -0.8 5,540,391 - -0.1 5,540,392 + +1.5 5,540,392 + -2.6 5,540,392 + -2.0 5,540,392 + -2.5 5,540,392 + +0.5 5,540,392 + +2.4 5,540,393 - +1.3 5,540,393 - -0.1 5,540,393 - -0.9 5,540,393 - +0.1 5,540,393 - -0.9 5,540,393 - +1.0 5,540,393 - -0.1 5,540,393 - +2.0 5,540,411 + -0.6 5,540,412 - -1.1 5,540,619 + PFLU_RS31065 0.85 +1.0 5,540,619 + PFLU_RS31065 0.85 -0.3 5,540,620 - PFLU_RS31065 0.85 -2.6 5,540,628 + PFLU_RS31065 0.89 -1.1 5,540,672 + +0.5 5,540,672 + +0.3 5,540,673 - -1.5 5,540,673 - -0.4 5,540,673 - +0.2 5,540,673 - -1.9 5,540,685 + -0.9 5,540,685 + +1.4 5,540,685 + +0.4 5,540,686 - -2.3 5,540,686 - -0.4 5,540,686 - -0.1 5,540,686 - +1.0 5,540,690 - +0.0 5,540,690 - +1.7 5,540,690 - -2.0 5,540,690 - +0.1 5,540,690 - +0.1 5,540,710 + +0.2 5,540,712 + +1.8 5,540,712 + +1.1 5,540,712 + +0.5 5,540,713 - +0.2 5,540,733 + -2.1 5,540,733 + +0.9 5,540,733 + +1.2 5,540,740 + +2.2 5,540,741 - -0.1 5,540,741 - +2.2 5,540,768 + +1.1 5,540,768 + +1.1 5,540,768 + -1.5 5,540,769 - -1.6 5,540,769 - -1.8 5,540,769 - -3.2 5,540,769 - -0.5 5,540,769 - +0.0 5,540,778 - +0.6 5,540,813 + +1.0
Or see this region's nucleotide sequence