Experiment: acetate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PFLU_RS24175 and PFLU_RS24180 are separated by 123 nucleotides PFLU_RS24180 and PFLU_RS24185 are separated by 305 nucleotides PFLU_RS24185 and PFLU_RS24190 are separated by 4 nucleotides
PFLU_RS24175: PFLU_RS24175 - bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ, at 5,409,634 to 5,410,851
_RS24175
PFLU_RS24180: PFLU_RS24180 - preprotein translocase subunit SecA, at 5,410,975 to 5,413,710
_RS24180
PFLU_RS24185: PFLU_RS24185 - DUF721 domain-containing protein, at 5,414,016 to 5,414,471
_RS24185
PFLU_RS24190: PFLU_RS24190 - DUF853 family protein, at 5,414,476 to 5,415,954
_RS24190
Position (kb) 5410
5411
5412
5413
5414 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 5410.116 kb on + strand, within PFLU_RS24175 at 5410.116 kb on + strand, within PFLU_RS24175 at 5410.116 kb on + strand, within PFLU_RS24175 at 5410.116 kb on + strand, within PFLU_RS24175 at 5410.116 kb on + strand, within PFLU_RS24175 at 5410.116 kb on + strand, within PFLU_RS24175 at 5410.117 kb on - strand, within PFLU_RS24175 at 5410.117 kb on - strand, within PFLU_RS24175 at 5410.117 kb on - strand, within PFLU_RS24175 at 5410.117 kb on - strand, within PFLU_RS24175 at 5410.117 kb on - strand, within PFLU_RS24175 at 5410.274 kb on + strand, within PFLU_RS24175 at 5410.274 kb on + strand, within PFLU_RS24175 at 5410.274 kb on + strand, within PFLU_RS24175 at 5410.274 kb on + strand, within PFLU_RS24175 at 5410.275 kb on - strand, within PFLU_RS24175 at 5410.275 kb on - strand, within PFLU_RS24175 at 5410.514 kb on + strand, within PFLU_RS24175 at 5410.865 kb on - strand at 5410.865 kb on - strand at 5410.865 kb on - strand at 5410.871 kb on - strand at 5410.871 kb on - strand at 5410.871 kb on - strand at 5410.908 kb on - strand at 5410.955 kb on + strand at 5410.955 kb on + strand at 5410.956 kb on - strand at 5410.956 kb on - strand at 5410.956 kb on - strand at 5411.025 kb on - strand at 5411.025 kb on - strand at 5411.105 kb on - strand at 5411.105 kb on - strand at 5411.105 kb on - strand at 5411.105 kb on - strand at 5413.733 kb on - strand at 5413.733 kb on - strand at 5413.828 kb on + strand at 5413.868 kb on + strand at 5413.966 kb on - strand at 5413.981 kb on + strand at 5413.982 kb on - strand at 5413.998 kb on + strand at 5413.998 kb on + strand at 5413.999 kb on - strand at 5414.003 kb on + strand at 5414.003 kb on + strand at 5414.003 kb on + strand at 5414.003 kb on + strand at 5414.003 kb on + strand at 5414.004 kb on - strand at 5414.004 kb on - strand at 5414.004 kb on - strand at 5414.004 kb on - strand at 5414.004 kb on - strand at 5414.004 kb on - strand at 5414.014 kb on + strand at 5414.015 kb on - strand at 5414.477 kb on + strand at 5414.477 kb on + strand at 5414.478 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction acetate (C) remove 5,410,116 + PFLU_RS24175 0.40 -1.2 5,410,116 + PFLU_RS24175 0.40 +2.2 5,410,116 + PFLU_RS24175 0.40 +1.7 5,410,116 + PFLU_RS24175 0.40 +2.2 5,410,116 + PFLU_RS24175 0.40 +1.5 5,410,116 + PFLU_RS24175 0.40 +2.1 5,410,117 - PFLU_RS24175 0.40 +1.1 5,410,117 - PFLU_RS24175 0.40 -0.2 5,410,117 - PFLU_RS24175 0.40 +1.4 5,410,117 - PFLU_RS24175 0.40 +1.6 5,410,117 - PFLU_RS24175 0.40 +2.0 5,410,274 + PFLU_RS24175 0.53 +0.5 5,410,274 + PFLU_RS24175 0.53 +0.5 5,410,274 + PFLU_RS24175 0.53 +2.4 5,410,274 + PFLU_RS24175 0.53 -0.1 5,410,275 - PFLU_RS24175 0.53 +2.0 5,410,275 - PFLU_RS24175 0.53 -1.0 5,410,514 + PFLU_RS24175 0.72 +2.4 5,410,865 - -2.4 5,410,865 - +2.0 5,410,865 - -1.3 5,410,871 - -0.5 5,410,871 - +0.6 5,410,871 - +0.9 5,410,908 - +0.1 5,410,955 + +2.1 5,410,955 + -0.4 5,410,956 - -1.3 5,410,956 - +1.9 5,410,956 - +1.1 5,411,025 - -1.2 5,411,025 - -2.4 5,411,105 - -2.0 5,411,105 - -1.6 5,411,105 - -0.5 5,411,105 - -1.7 5,413,733 - -1.3 5,413,733 - -2.3 5,413,828 + -2.5 5,413,868 + +0.5 5,413,966 - +1.9 5,413,981 + +2.3 5,413,982 - -2.1 5,413,998 + -3.0 5,413,998 + -0.2 5,413,999 - +1.2 5,414,003 + -0.2 5,414,003 + +1.1 5,414,003 + -0.8 5,414,003 + -1.1 5,414,003 + +0.5 5,414,004 - +0.9 5,414,004 - +1.0 5,414,004 - -2.5 5,414,004 - -1.0 5,414,004 - +0.3 5,414,004 - -1.9 5,414,014 + -0.4 5,414,015 - -1.3 5,414,477 + +1.0 5,414,477 + -1.5 5,414,478 - +0.6
Or see this region's nucleotide sequence