Strain Fitness in Pseudomonas fluorescens SBW25 around PFLU_RS21605

Experiment: acetate (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	acetate (C)
4,870,442	+		PFLU_RS21595	0.76	+0.5
4,870,442	+		PFLU_RS21595	0.76	-2.9
4,870,443	-		PFLU_RS21595	0.77	+0.5
4,870,443	-		PFLU_RS21595	0.77	+0.8
4,870,443	-		PFLU_RS21595	0.77	-2.3
4,870,443	-		PFLU_RS21595	0.77	-1.7
4,870,443	-		PFLU_RS21595	0.77	+0.1
4,870,662	+				-1.2
4,870,662	+				-0.5
4,870,662	+				-0.6
4,870,663	-				+3.1
4,870,663	-				-2.4
4,870,663	-				-0.4
4,870,663	-				-1.3
4,870,671	+				-0.4
4,870,671	+				-1.7
4,870,671	+				+1.1
4,870,671	+				-1.4
4,870,671	+				-0.3
4,870,672	-				+1.7
4,870,672	-				-1.4
4,870,672	-				+0.7
4,870,731	-		PFLU_RS21600	0.12	-1.4
4,870,767	+		PFLU_RS21600	0.18	+1.8
4,870,767	+		PFLU_RS21600	0.18	-2.3
4,870,767	+		PFLU_RS21600	0.18	+0.9
4,870,768	-		PFLU_RS21600	0.18	+1.2
4,870,952	+		PFLU_RS21600	0.46	+1.0
4,870,952	+		PFLU_RS21600	0.46	-1.7
4,870,952	+		PFLU_RS21600	0.46	+0.8
4,870,953	-		PFLU_RS21600	0.46	-0.7
4,870,953	-		PFLU_RS21600	0.46	-0.4
4,871,022	-		PFLU_RS21600	0.57	+0.4
4,871,268	+				+1.3
4,871,268	+				+2.7
4,871,269	-				-1.0
4,871,269	-				+0.1
4,871,269	-				-2.0
4,871,403	+		PFLU_RS21605	0.15	-2.8
4,871,403	+		PFLU_RS21605	0.15	+0.8
4,871,403	+		PFLU_RS21605	0.15	+0.3
4,871,403	+		PFLU_RS21605	0.15	-0.5
4,871,403	+		PFLU_RS21605	0.15	+0.8
4,871,403	+		PFLU_RS21605	0.15	+3.1
4,871,403	+		PFLU_RS21605	0.15	-1.6
4,871,404	-		PFLU_RS21605	0.15	+1.0
4,871,404	-		PFLU_RS21605	0.15	-1.3
4,871,404	-		PFLU_RS21605	0.15	-1.6
4,871,404	-		PFLU_RS21605	0.15	-0.6
4,871,404	-		PFLU_RS21605	0.15	+3.6
4,871,404	-		PFLU_RS21605	0.15	-0.5
4,871,404	-		PFLU_RS21605	0.15	+0.8
4,871,425	+		PFLU_RS21605	0.17	+0.9
4,871,500	+		PFLU_RS21605	0.25	-0.8
4,871,500	+		PFLU_RS21605	0.25	-0.3
4,871,500	+		PFLU_RS21605	0.25	+2.0
4,871,500	+		PFLU_RS21605	0.25	-2.5
4,871,501	-		PFLU_RS21605	0.25	+1.1
4,871,501	-		PFLU_RS21605	0.25	+0.5
4,871,501	-		PFLU_RS21605	0.25	+0.7
4,871,573	+		PFLU_RS21605	0.33	-2.8
4,871,573	+		PFLU_RS21605	0.33	+0.6
4,871,573	+		PFLU_RS21605	0.33	-2.1
4,871,573	+		PFLU_RS21605	0.33	-0.5
4,871,573	+		PFLU_RS21605	0.33	+1.6
4,871,573	+		PFLU_RS21605	0.33	-2.0
4,871,573	+		PFLU_RS21605	0.33	-0.5
4,871,574	-		PFLU_RS21605	0.33	+1.5
4,871,574	-		PFLU_RS21605	0.33	+0.1
4,871,574	-		PFLU_RS21605	0.33	+0.1
4,871,574	-		PFLU_RS21605	0.33	+0.9
4,871,574	-		PFLU_RS21605	0.33	-0.3
4,871,574	-		PFLU_RS21605	0.33	+2.2
4,871,574	-		PFLU_RS21605	0.33	+0.5
4,871,574	-		PFLU_RS21605	0.33	-1.0
4,871,574	-		PFLU_RS21605	0.33	+1.7
4,871,574	-		PFLU_RS21605	0.33	-1.6
4,871,574	-		PFLU_RS21605	0.33	-2.0
4,871,574	-		PFLU_RS21605	0.33	+1.1
4,871,667	+		PFLU_RS21605	0.43	-0.5
4,871,667	+		PFLU_RS21605	0.43	+0.8
4,871,668	-		PFLU_RS21605	0.44	-1.6
4,871,668	-		PFLU_RS21605	0.44	-0.3
4,871,712	+		PFLU_RS21605	0.48	-0.7
4,871,712	+		PFLU_RS21605	0.48	-1.5
4,871,713	-		PFLU_RS21605	0.48	+1.1
4,871,713	-		PFLU_RS21605	0.48	+1.1
4,871,713	-		PFLU_RS21605	0.48	-0.1
4,872,250	+				-1.5
4,872,307	+				+2.1
4,872,308	-				-0.6
4,872,308	-				+1.3
4,872,329	+				+0.8
4,872,329	+				+0.4
4,872,329	+				-3.3
4,872,329	+				-2.5
4,872,329	+				+0.4
4,872,329	+				-2.0
4,872,329	+				+1.2
4,872,329	+				-2.4
4,872,329	+				+1.9
4,872,329	+				+1.1
4,872,329	+				-2.6
4,872,330	-				+2.2
4,872,330	-				+2.0
4,872,330	-				-2.3
4,872,330	-				+0.4
4,872,330	-				+1.2
4,872,330	-				+1.7
4,872,330	-				-0.6
4,872,330	-				+2.1
4,872,330	-				-0.5
4,872,330	-				-1.3
4,872,330	-				+2.0
4,872,330	-				-0.5
4,872,384	+				+0.7
4,872,384	+				-1.9
4,872,384	+				-0.5
4,872,495	+				-1.7
4,872,495	+				+2.1
4,872,574	-				-2.8
4,872,588	+				+0.2
4,872,588	+				+1.0
4,872,588	+				-1.9
4,872,588	+				+1.5
4,872,588	+				-2.2
4,872,589	-				+0.0
4,872,589	-				+1.9
4,872,589	-				+0.3
4,872,589	-				+1.3
4,872,589	-				-0.1
4,872,589	-				-0.1
4,872,589	-				-0.5
4,872,589	-				+0.2
4,872,589	-				-1.6
4,872,589	-				+1.9
4,872,592	+				-1.3
4,872,592	+				+0.5
4,872,593	-				-1.7
4,872,593	-				+1.4
4,872,593	-				-0.7
4,872,607	+				+0.2
4,872,607	+				-2.1
4,872,607	+				+0.2
4,872,607	+				+0.7
4,872,607	+				+1.0
4,872,607	+				+2.5
4,872,607	+				+1.1
4,872,608	-				+1.1
4,872,608	-				+1.3
4,872,608	-				+1.1
4,872,616	+				+1.9
4,872,616	+				+0.4
4,872,617	-				+2.2
4,872,617	-				+0.9
4,872,617	-				+1.9
4,872,617	-				-1.2
4,872,617	-				-2.0
4,872,661	+		PFLU_RS21610	0.16	-0.6
4,872,661	+		PFLU_RS21610	0.16	+1.9
4,872,662	-		PFLU_RS21610	0.16	+1.0
4,872,773	+		PFLU_RS21610	0.44	-1.9
4,872,773	+		PFLU_RS21610	0.44	+1.8
4,872,773	+		PFLU_RS21610	0.44	-0.9
4,872,773	+		PFLU_RS21610	0.44	+2.7
4,872,773	+		PFLU_RS21610	0.44	-0.1
4,872,773	+		PFLU_RS21610	0.44	-1.8
4,872,773	+		PFLU_RS21610	0.44	+2.0
4,872,774	-		PFLU_RS21610	0.45	+1.0
4,872,774	-		PFLU_RS21610	0.45	-2.4
4,872,774	-		PFLU_RS21610	0.45	-1.1
4,872,826	-		PFLU_RS21610	0.58	+0.9
4,872,922	-		PFLU_RS21610	0.82	+1.6
4,872,922	-		PFLU_RS21610	0.82	+1.1
4,872,922	-		PFLU_RS21610	0.82	+1.4
4,872,922	-		PFLU_RS21610	0.82	+1.9
4,872,971	+				+2.3
4,872,972	-				+1.2
4,872,972	-				+1.1
4,872,972	-				+1.0
4,872,972	-				+1.1
4,873,152	+		PFLU_RS21615	0.33	+0.6
4,873,152	+		PFLU_RS21615	0.33	+2.9
4,873,183	+		PFLU_RS21615	0.40	-0.8
4,873,183	+		PFLU_RS21615	0.40	+2.5