Strain Fitness in Pseudomonas fluorescens SBW25 around PFLU_RS19750

Experiment: acetate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPFLU_RS19745 and PFLU_RS19750 overlap by 1 nucleotidesPFLU_RS19750 and PFLU_RS19755 overlap by 4 nucleotides PFLU_RS19745: PFLU_RS19745 - acetylornithine deacetylase, at 4,468,143 to 4,469,300 _RS19745 PFLU_RS19750: PFLU_RS19750 - FAD-binding oxidoreductase, at 4,469,300 to 4,470,451 _RS19750 PFLU_RS19755: PFLU_RS19755 - NAD(P)-binding protein, at 4,470,448 to 4,471,827 _RS19755 Position (kb) 4469 4470 4471Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 4468.554 kb on - strand, within PFLU_RS19745at 4468.622 kb on - strand, within PFLU_RS19745at 4468.756 kb on + strand, within PFLU_RS19745at 4468.756 kb on + strand, within PFLU_RS19745at 4468.757 kb on - strand, within PFLU_RS19745at 4468.757 kb on - strand, within PFLU_RS19745at 4468.757 kb on - strand, within PFLU_RS19745at 4468.765 kb on + strand, within PFLU_RS19745at 4469.215 kb on + strandat 4469.215 kb on + strandat 4469.215 kb on + strandat 4469.216 kb on - strandat 4469.454 kb on + strand, within PFLU_RS19750at 4469.454 kb on + strand, within PFLU_RS19750at 4469.454 kb on + strand, within PFLU_RS19750at 4469.455 kb on - strand, within PFLU_RS19750at 4469.455 kb on - strand, within PFLU_RS19750at 4469.616 kb on + strand, within PFLU_RS19750at 4469.616 kb on + strand, within PFLU_RS19750at 4469.617 kb on - strand, within PFLU_RS19750at 4469.698 kb on - strand, within PFLU_RS19750at 4469.698 kb on - strand, within PFLU_RS19750at 4469.698 kb on - strand, within PFLU_RS19750at 4469.698 kb on - strand, within PFLU_RS19750at 4469.724 kb on + strand, within PFLU_RS19750at 4469.724 kb on + strand, within PFLU_RS19750at 4469.725 kb on - strand, within PFLU_RS19750at 4469.725 kb on - strand, within PFLU_RS19750at 4469.751 kb on + strand, within PFLU_RS19750at 4470.096 kb on + strand, within PFLU_RS19750at 4470.097 kb on - strand, within PFLU_RS19750at 4470.138 kb on + strand, within PFLU_RS19750at 4470.184 kb on + strand, within PFLU_RS19750at 4470.184 kb on + strand, within PFLU_RS19750at 4470.185 kb on - strand, within PFLU_RS19750at 4470.926 kb on + strand, within PFLU_RS19755at 4470.926 kb on + strand, within PFLU_RS19755at 4470.926 kb on + strand, within PFLU_RS19755at 4470.927 kb on - strand, within PFLU_RS19755at 4470.927 kb on - strand, within PFLU_RS19755at 4470.927 kb on - strand, within PFLU_RS19755at 4470.927 kb on - strand, within PFLU_RS19755at 4471.322 kb on + strand, within PFLU_RS19755at 4471.323 kb on - strand, within PFLU_RS19755at 4471.430 kb on + strand, within PFLU_RS19755at 4471.430 kb on + strand, within PFLU_RS19755at 4471.430 kb on + strand, within PFLU_RS19755at 4471.431 kb on - strand, within PFLU_RS19755at 4471.431 kb on - strand, within PFLU_RS19755at 4471.431 kb on - strand, within PFLU_RS19755at 4471.431 kb on - strand, within PFLU_RS19755at 4471.431 kb on - strand, within PFLU_RS19755

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Per-strain Table

Position Strand Gene LocusTag Fraction acetate (C)
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4,468,554 - PFLU_RS19745 0.35 -0.0
4,468,622 - PFLU_RS19745 0.41 -0.7
4,468,756 + PFLU_RS19745 0.53 -1.5
4,468,756 + PFLU_RS19745 0.53 -0.1
4,468,757 - PFLU_RS19745 0.53 -1.8
4,468,757 - PFLU_RS19745 0.53 -2.3
4,468,757 - PFLU_RS19745 0.53 -0.3
4,468,765 + PFLU_RS19745 0.54 -0.6
4,469,215 + -0.3
4,469,215 + -2.8
4,469,215 + -0.1
4,469,216 - +1.3
4,469,454 + PFLU_RS19750 0.13 +1.4
4,469,454 + PFLU_RS19750 0.13 +0.2
4,469,454 + PFLU_RS19750 0.13 -0.2
4,469,455 - PFLU_RS19750 0.13 +2.3
4,469,455 - PFLU_RS19750 0.13 +1.2
4,469,616 + PFLU_RS19750 0.27 +2.4
4,469,616 + PFLU_RS19750 0.27 -2.0
4,469,617 - PFLU_RS19750 0.28 -1.2
4,469,698 - PFLU_RS19750 0.35 +0.8
4,469,698 - PFLU_RS19750 0.35 +3.0
4,469,698 - PFLU_RS19750 0.35 -0.7
4,469,698 - PFLU_RS19750 0.35 -0.9
4,469,724 + PFLU_RS19750 0.37 +0.9
4,469,724 + PFLU_RS19750 0.37 +0.0
4,469,725 - PFLU_RS19750 0.37 -1.2
4,469,725 - PFLU_RS19750 0.37 -0.1
4,469,751 + PFLU_RS19750 0.39 -0.6
4,470,096 + PFLU_RS19750 0.69 -0.3
4,470,097 - PFLU_RS19750 0.69 +0.1
4,470,138 + PFLU_RS19750 0.73 -3.5
4,470,184 + PFLU_RS19750 0.77 +0.6
4,470,184 + PFLU_RS19750 0.77 +1.9
4,470,185 - PFLU_RS19750 0.77 +2.1
4,470,926 + PFLU_RS19755 0.35 +1.2
4,470,926 + PFLU_RS19755 0.35 -1.8
4,470,926 + PFLU_RS19755 0.35 -1.2
4,470,927 - PFLU_RS19755 0.35 -0.8
4,470,927 - PFLU_RS19755 0.35 -0.2
4,470,927 - PFLU_RS19755 0.35 +0.6
4,470,927 - PFLU_RS19755 0.35 +0.7
4,471,322 + PFLU_RS19755 0.63 -0.3
4,471,323 - PFLU_RS19755 0.63 +0.3
4,471,430 + PFLU_RS19755 0.71 +0.6
4,471,430 + PFLU_RS19755 0.71 -1.0
4,471,430 + PFLU_RS19755 0.71 -1.9
4,471,431 - PFLU_RS19755 0.71 +0.1
4,471,431 - PFLU_RS19755 0.71 +1.5
4,471,431 - PFLU_RS19755 0.71 -1.5
4,471,431 - PFLU_RS19755 0.71 -1.2
4,471,431 - PFLU_RS19755 0.71 +0.8

Or see this region's nucleotide sequence