Strain Fitness in Pseudomonas fluorescens SBW25 around PFLU_RS14735

Experiment: acetate (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	acetate (C)
3,291,008	-		PFLU_RS14725	0.65	-1.5
3,291,081	-		PFLU_RS14725	0.71	-0.7
3,291,081	-		PFLU_RS14725	0.71	-0.3
3,291,081	-		PFLU_RS14725	0.71	+1.9
3,291,081	-		PFLU_RS14725	0.71	-0.0
3,291,081	-		PFLU_RS14725	0.71	-0.5
3,291,174	+		PFLU_RS14725	0.79	+1.0
3,291,249	-		PFLU_RS14725	0.85	+2.5
3,291,249	-		PFLU_RS14725	0.85	+2.3
3,291,314	+				+2.7
3,291,371	-				+0.1
3,291,469	+				+0.7
3,291,469	+				-0.2
3,291,470	-				+0.7
3,291,555	+		PFLU_RS14730	0.14	-2.3
3,291,555	+		PFLU_RS14730	0.14	-1.7
3,291,555	+		PFLU_RS14730	0.14	-2.5
3,291,555	+		PFLU_RS14730	0.14	-0.3
3,291,555	+		PFLU_RS14730	0.14	-2.2
3,291,555	+		PFLU_RS14730	0.14	+2.1
3,291,574	+		PFLU_RS14730	0.19	-0.5
3,291,574	+		PFLU_RS14730	0.19	-2.2
3,291,726	+		PFLU_RS14730	0.59	-3.0
3,291,726	+		PFLU_RS14730	0.59	+0.8
3,291,726	+		PFLU_RS14730	0.59	-1.4
3,291,727	-		PFLU_RS14730	0.60	+0.2
3,291,727	-		PFLU_RS14730	0.60	+0.1
3,291,732	-		PFLU_RS14730	0.61	+1.3
3,291,843	+				+0.7
3,291,843	+				+0.3
3,291,858	+				+0.0
3,291,858	+				-0.4
3,291,858	+				-0.5
3,291,858	+				+0.0
3,291,859	-				-1.0
3,291,877	+				+2.6
3,291,877	+				+0.6
3,291,877	+				+1.4
3,291,984	+				-1.5
3,291,984	+				+3.2
3,291,984	+				-0.5
3,291,985	-				+0.3
3,292,008	+				-0.6
3,292,008	+				-2.4
3,292,009	-				-3.3
3,292,078	+				+1.1
3,292,079	-				+4.6
3,292,093	+				+0.9
3,292,114	+				-0.5
3,292,114	+				-2.0
3,292,114	+				-0.3
3,292,115	-				-0.2
3,292,115	-				-0.5
3,292,115	-				+1.1
3,292,115	-				+0.1
3,292,115	-				-0.5
3,292,115	-				-2.2
3,292,117	-				-0.4
3,292,117	-				-0.1
3,292,117	-				-1.0
3,292,117	-				-0.5
3,292,212	+				+0.5
3,292,242	-				+1.2
3,292,242	-				-1.5
3,292,303	+				+2.3
3,292,322	+				+2.0
3,292,322	+				+0.6
3,292,322	+				-1.9
3,292,322	+				-0.1
3,292,322	+				-0.8
3,292,323	-				-2.2
3,292,323	-				-0.1
3,292,323	-				+0.1
3,292,323	-				+0.3
3,292,323	-				+0.5
3,292,323	-				-0.9
3,292,323	-				-0.2
3,292,323	-				-0.0
3,292,335	+				+0.0
3,292,335	+				+0.4
3,292,336	-				-1.5
3,292,336	-				-1.3
3,292,402	+				+1.9
3,292,403	-				-0.4
3,292,403	-				+0.3
3,292,403	-				-1.7
3,292,403	-				-2.3
3,292,403	-				-0.5
3,292,418	-		PFLU_RS14735	0.10	+1.4
3,292,461	+		PFLU_RS14735	0.11	+1.1
3,292,461	+		PFLU_RS14735	0.11	+0.8
3,292,461	+		PFLU_RS14735	0.11	+0.1
3,292,461	+		PFLU_RS14735	0.11	-1.9
3,292,461	+		PFLU_RS14735	0.11	-1.3
3,292,461	+		PFLU_RS14735	0.11	-1.5
3,292,461	+		PFLU_RS14735	0.11	+1.5
3,292,462	-		PFLU_RS14735	0.11	-0.8
3,292,462	-		PFLU_RS14735	0.11	+2.1
3,292,462	-		PFLU_RS14735	0.11	-0.7
3,292,462	-		PFLU_RS14735	0.11	-2.5
3,292,462	-		PFLU_RS14735	0.11	+0.4
3,292,462	-		PFLU_RS14735	0.11	-3.1
3,292,465	+		PFLU_RS14735	0.11	-0.2
3,292,465	+		PFLU_RS14735	0.11	-2.6
3,292,465	+		PFLU_RS14735	0.11	-2.2
3,292,466	-		PFLU_RS14735	0.11	-0.3
3,292,569	+		PFLU_RS14735	0.14	+0.5
3,292,570	-		PFLU_RS14735	0.14	+1.4
3,292,570	-		PFLU_RS14735	0.14	-3.0
3,292,570	-		PFLU_RS14735	0.14	+1.0
3,292,570	-		PFLU_RS14735	0.14	+0.3
3,292,570	-		PFLU_RS14735	0.14	-0.5
3,292,573	+		PFLU_RS14735	0.14	+1.6
3,292,574	-		PFLU_RS14735	0.14	-1.0
3,292,574	-		PFLU_RS14735	0.14	-1.3
3,292,574	-		PFLU_RS14735	0.14	+0.6
3,292,574	-		PFLU_RS14735	0.14	+2.2
3,292,613	+		PFLU_RS14735	0.15	-0.6
3,292,614	-		PFLU_RS14735	0.15	-0.7
3,292,614	-		PFLU_RS14735	0.15	-2.3
3,292,614	-		PFLU_RS14735	0.15	-0.3
3,292,614	-		PFLU_RS14735	0.15	-0.5
3,292,614	-		PFLU_RS14735	0.15	+0.7
3,292,614	-		PFLU_RS14735	0.15	-2.0
3,292,656	+		PFLU_RS14735	0.16	+0.1
3,292,656	+		PFLU_RS14735	0.16	-1.1
3,292,663	+		PFLU_RS14735	0.16	+0.7
3,292,671	+		PFLU_RS14735	0.16	+2.2
3,292,672	-		PFLU_RS14735	0.16	-0.4
3,292,672	-		PFLU_RS14735	0.16	+0.4
3,292,745	-		PFLU_RS14735	0.18	-0.1
3,292,745	-		PFLU_RS14735	0.18	+0.7
3,292,761	-		PFLU_RS14735	0.18	+0.7
3,292,792	+		PFLU_RS14735	0.19	-0.4
3,292,794	+		PFLU_RS14735	0.19	-2.0
3,292,794	+		PFLU_RS14735	0.19	-1.0
3,292,794	+		PFLU_RS14735	0.19	-0.7
3,292,795	-		PFLU_RS14735	0.19	-0.3
3,292,795	-		PFLU_RS14735	0.19	+2.0
3,292,795	-		PFLU_RS14735	0.19	+0.2
3,292,795	-		PFLU_RS14735	0.19	-0.1
3,292,971	+		PFLU_RS14735	0.23	-1.6
3,292,971	+		PFLU_RS14735	0.23	+1.4
3,292,972	-		PFLU_RS14735	0.23	-1.3
3,292,972	-		PFLU_RS14735	0.23	+2.0
3,292,972	-		PFLU_RS14735	0.23	-2.9
3,292,972	-		PFLU_RS14735	0.23	+2.3
3,292,995	+		PFLU_RS14735	0.24	+1.0
3,292,995	+		PFLU_RS14735	0.24	+0.6
3,292,995	+		PFLU_RS14735	0.24	+1.3
3,292,995	+		PFLU_RS14735	0.24	+0.1
3,292,996	-		PFLU_RS14735	0.24	-2.5
3,292,996	-		PFLU_RS14735	0.24	-1.7
3,293,001	+		PFLU_RS14735	0.24	+1.3
3,293,001	+		PFLU_RS14735	0.24	+0.2
3,293,090	-		PFLU_RS14735	0.26	-1.2
3,293,109	+		PFLU_RS14735	0.26	-0.6
3,293,109	+		PFLU_RS14735	0.26	+1.5
3,293,109	+		PFLU_RS14735	0.26	-0.2
3,293,109	+		PFLU_RS14735	0.26	+1.3
3,293,109	+		PFLU_RS14735	0.26	-0.6
3,293,109	+		PFLU_RS14735	0.26	+0.5
3,293,109	+		PFLU_RS14735	0.26	+1.9
3,293,110	-		PFLU_RS14735	0.26	+1.4
3,293,110	-		PFLU_RS14735	0.26	+2.6
3,293,110	-		PFLU_RS14735	0.26	-1.8
3,293,110	-		PFLU_RS14735	0.26	+1.5
3,293,110	-		PFLU_RS14735	0.26	+1.3
3,293,110	-		PFLU_RS14735	0.26	-2.0
3,293,110	-		PFLU_RS14735	0.26	+1.6
3,293,110	-		PFLU_RS14735	0.26	-0.3
3,293,110	-		PFLU_RS14735	0.26	-2.4
3,293,110	-		PFLU_RS14735	0.26	+0.7
3,293,110	-		PFLU_RS14735	0.26	+1.5
3,293,110	-		PFLU_RS14735	0.26	+0.1
3,293,110	-		PFLU_RS14735	0.26	+0.1
3,293,110	-		PFLU_RS14735	0.26	-1.0
3,293,110	-		PFLU_RS14735	0.26	+2.0
3,293,110	-		PFLU_RS14735	0.26	+1.9
3,293,110	-		PFLU_RS14735	0.26	-1.6
3,293,129	+		PFLU_RS14735	0.27	+0.4
3,293,130	-		PFLU_RS14735	0.27	+0.7
3,293,207	+		PFLU_RS14735	0.29	-0.3
3,293,270	-		PFLU_RS14735	0.30	-2.6
3,293,270	-		PFLU_RS14735	0.30	-1.9
3,293,270	-		PFLU_RS14735	0.30	+0.0
3,293,326	+		PFLU_RS14735	0.31	-0.0
3,293,327	-		PFLU_RS14735	0.31	+0.3
3,293,327	-		PFLU_RS14735	0.31	+1.2
3,293,363	+		PFLU_RS14735	0.32	-2.7
3,293,363	+		PFLU_RS14735	0.32	+1.4
3,293,399	-		PFLU_RS14735	0.33	-0.7
3,293,399	-		PFLU_RS14735	0.33	+0.9
3,293,447	-		PFLU_RS14735	0.34	+0.4
3,293,447	-		PFLU_RS14735	0.34	+0.7
3,293,472	+		PFLU_RS14735	0.35	-1.9
3,293,473	-		PFLU_RS14735	0.35	-1.9
3,293,593	+		PFLU_RS14735	0.38	+2.5
3,293,817	+		PFLU_RS14735	0.43	+1.0
3,293,817	+		PFLU_RS14735	0.43	-0.3
3,293,817	+		PFLU_RS14735	0.43	+0.4
3,293,817	+		PFLU_RS14735	0.43	-1.8
3,293,817	+		PFLU_RS14735	0.43	-0.8
3,293,818	-		PFLU_RS14735	0.43	-0.6
3,293,818	-		PFLU_RS14735	0.43	+0.9
3,293,818	-		PFLU_RS14735	0.43	-2.0
3,294,020	-		PFLU_RS14735	0.48	+0.5
3,294,098	+		PFLU_RS14735	0.49	+2.6
3,294,099	-		PFLU_RS14735	0.49	-1.0
3,294,099	-		PFLU_RS14735	0.49	-0.0
3,294,099	-		PFLU_RS14735	0.49	+0.9
3,294,163	+		PFLU_RS14735	0.51	+0.6
3,294,163	+		PFLU_RS14735	0.51	+2.7
3,294,163	+		PFLU_RS14735	0.51	+1.7
3,294,163	+		PFLU_RS14735	0.51	-1.9
3,294,163	+		PFLU_RS14735	0.51	+1.5
3,294,163	+		PFLU_RS14735	0.51	+0.9
3,294,164	-		PFLU_RS14735	0.51	+0.9
3,294,166	-		PFLU_RS14735	0.51	+0.1
3,294,166	-		PFLU_RS14735	0.51	+0.8
3,294,166	-		PFLU_RS14735	0.51	-2.7
3,294,261	+		PFLU_RS14735	0.53	-0.5
3,294,261	+		PFLU_RS14735	0.53	+0.9
3,294,261	+		PFLU_RS14735	0.53	-2.4
3,294,261	+		PFLU_RS14735	0.53	+0.6
3,294,261	+		PFLU_RS14735	0.53	-1.6
3,294,261	+		PFLU_RS14735	0.53	-2.6
3,294,261	+		PFLU_RS14735	0.53	-2.8
3,294,261	+		PFLU_RS14735	0.53	+1.3
3,294,262	-		PFLU_RS14735	0.53	-0.7
3,294,262	-		PFLU_RS14735	0.53	+1.4
3,294,262	-		PFLU_RS14735	0.53	-0.0
3,294,262	-		PFLU_RS14735	0.53	+1.1
3,294,262	-		PFLU_RS14735	0.53	-3.5
3,294,262	-		PFLU_RS14735	0.53	-1.5
3,294,262	-		PFLU_RS14735	0.53	+0.3
3,294,304	-		PFLU_RS14735	0.54	-1.9
3,294,304	-		PFLU_RS14735	0.54	-1.0
3,294,304	-		PFLU_RS14735	0.54	-1.3
3,294,317	+		PFLU_RS14735	0.55	+0.4
3,294,317	+		PFLU_RS14735	0.55	+1.9
3,294,317	+		PFLU_RS14735	0.55	+1.5
3,294,318	-		PFLU_RS14735	0.55	+2.3
3,294,453	+		PFLU_RS14735	0.58	+1.1
3,294,453	+		PFLU_RS14735	0.58	+1.5
3,294,453	+		PFLU_RS14735	0.58	-1.0
3,294,453	+		PFLU_RS14735	0.58	-1.9
3,294,454	-		PFLU_RS14735	0.58	+1.1
3,294,508	+		PFLU_RS14735	0.59	-0.3
3,294,508	+		PFLU_RS14735	0.59	+1.7
3,294,509	-		PFLU_RS14735	0.59	-1.9
3,294,515	-		PFLU_RS14735	0.59	-0.5
3,294,552	+		PFLU_RS14735	0.60	-0.7
3,294,552	+		PFLU_RS14735	0.60	-1.9
3,294,552	+		PFLU_RS14735	0.60	+1.3
3,294,552	+		PFLU_RS14735	0.60	+0.0
3,294,553	-		PFLU_RS14735	0.60	-1.5
3,294,553	-		PFLU_RS14735	0.60	+0.5
3,294,605	+		PFLU_RS14735	0.61	-2.4
3,294,605	+		PFLU_RS14735	0.61	-1.0
3,294,606	-		PFLU_RS14735	0.61	+2.5
3,294,615	+		PFLU_RS14735	0.62	+0.5
3,294,615	+		PFLU_RS14735	0.62	-0.8
3,294,615	+		PFLU_RS14735	0.62	+1.1
3,294,615	+		PFLU_RS14735	0.62	+0.8
3,294,615	+		PFLU_RS14735	0.62	+2.1
3,294,616	-		PFLU_RS14735	0.62	+2.1
3,294,616	-		PFLU_RS14735	0.62	+0.9
3,294,670	+		PFLU_RS14735	0.63	-0.7
3,294,671	-		PFLU_RS14735	0.63	-2.2
3,294,718	+		PFLU_RS14735	0.64	+0.2
3,294,731	+		PFLU_RS14735	0.64	-0.5
3,294,732	-		PFLU_RS14735	0.64	+1.0
3,294,813	+		PFLU_RS14735	0.66	+1.0
3,294,814	-		PFLU_RS14735	0.66	+1.4
3,294,814	-		PFLU_RS14735	0.66	+2.4
3,294,814	-		PFLU_RS14735	0.66	+0.6
3,295,109	-		PFLU_RS14735	0.73	-1.5
3,295,173	+		PFLU_RS14735	0.75	+1.0
3,295,173	+		PFLU_RS14735	0.75	+2.8
3,295,246	-		PFLU_RS14735	0.76	-1.7
3,295,246	-		PFLU_RS14735	0.76	-3.0
3,295,246	-		PFLU_RS14735	0.76	-0.1
3,295,246	-		PFLU_RS14735	0.76	+1.2
3,295,254	+		PFLU_RS14735	0.76	+0.9
3,295,254	+		PFLU_RS14735	0.76	+0.8
3,295,254	+		PFLU_RS14735	0.76	+1.0
3,295,254	+		PFLU_RS14735	0.76	-0.4
3,295,254	+		PFLU_RS14735	0.76	+2.1
3,295,328	-		PFLU_RS14735	0.78	+2.7
3,295,342	-		PFLU_RS14735	0.79	-0.7
3,295,401	+		PFLU_RS14735	0.80	+1.3
3,295,401	+		PFLU_RS14735	0.80	+0.8
3,295,401	+		PFLU_RS14735	0.80	+1.1
3,295,402	-		PFLU_RS14735	0.80	-0.5
3,295,402	-		PFLU_RS14735	0.80	-1.5
3,295,402	-		PFLU_RS14735	0.80	-1.2
3,295,432	+		PFLU_RS14735	0.81	+1.2
3,295,433	-		PFLU_RS14735	0.81	+0.4
3,295,443	+		PFLU_RS14735	0.81	-1.5
3,295,443	+		PFLU_RS14735	0.81	+1.9
3,295,444	-		PFLU_RS14735	0.81	-0.1
3,295,563	-		PFLU_RS14735	0.84	+1.3
3,295,616	+		PFLU_RS14735	0.85	+2.1
3,295,695	+		PFLU_RS14735	0.87	-2.0
3,295,695	+		PFLU_RS14735	0.87	-2.2
3,295,696	-		PFLU_RS14735	0.87	+0.9
3,295,696	-		PFLU_RS14735	0.87	+2.2
3,295,796	+		PFLU_RS14735	0.89	+1.0
3,295,797	-		PFLU_RS14735	0.89	+1.6
3,295,850	-				-0.0
3,295,850	-				+1.4
3,295,850	-				+1.8
3,295,941	+				-0.8
3,296,089	-				+0.2
3,296,178	-				-1.2
3,296,180	+				-1.0
3,296,180	+				+1.2
3,296,180	+				-0.9
3,296,181	-				-0.6
3,296,181	-				+0.0
3,296,181	-				+1.0
3,296,181	-				+0.2
3,296,237	+				-0.7
3,296,237	+				-1.0
3,296,238	-				+1.8
3,296,238	-				-0.5
3,296,260	+				-2.9
3,296,261	-				-0.0
3,296,286	+				-1.3
3,296,327	+				-1.0
3,296,327	+				+0.7
3,296,328	-				-0.5
3,296,328	-				+2.6
3,296,347	-				-2.9
3,296,357	+				+0.6
3,296,368	-				+2.3
3,296,387	-				+0.4
3,296,387	-				+0.4
3,296,443	+				+1.7
3,296,443	+				-0.2
3,296,443	+				+0.2
3,296,443	+				+2.8
3,296,443	+				-1.0
3,296,444	-				-0.7
3,296,444	-				-0.5
3,296,444	-				-2.3
3,296,444	-				+0.9
3,296,671	+		PFLU_RS14740	0.13	+0.1
3,296,733	+		PFLU_RS14740	0.17	+0.5
3,296,734	-		PFLU_RS14740	0.17	-2.0
3,296,734	-		PFLU_RS14740	0.17	-0.0
3,296,765	+		PFLU_RS14740	0.19	+0.9
3,296,765	+		PFLU_RS14740	0.19	-0.7
3,296,765	+		PFLU_RS14740	0.19	+1.6
3,296,765	+		PFLU_RS14740	0.19	-2.7
3,296,766	-		PFLU_RS14740	0.19	-1.2
3,296,766	-		PFLU_RS14740	0.19	-1.3
3,296,958	+		PFLU_RS14740	0.31	+0.7
3,296,958	+		PFLU_RS14740	0.31	+0.7
3,297,085	-		PFLU_RS14740	0.38	-0.7
3,297,085	-		PFLU_RS14740	0.38	+0.6
3,297,108	+		PFLU_RS14740	0.40	+1.1
3,297,109	-		PFLU_RS14740	0.40	+1.7