Strain Fitness in Pseudomonas fluorescens SBW25 around PFLU_RS13270

Experiment: acetate (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	acetate (C)
2,998,983	+				-2.0
2,999,092	-				-0.5
2,999,133	+				+0.4
2,999,134	-				-1.8
2,999,134	-				+1.4
2,999,134	-				+0.7
2,999,134	-				-1.8
2,999,134	-				-1.0
2,999,134	-				+0.1
2,999,134	-				+0.4
2,999,134	-				-2.5
2,999,134	-				-2.1
2,999,350	-		PFLU_RS13265	0.28	-2.6
2,999,350	-		PFLU_RS13265	0.28	+0.6
2,999,350	-		PFLU_RS13265	0.28	+0.7
2,999,350	-		PFLU_RS13265	0.28	-0.7
2,999,350	-		PFLU_RS13265	0.28	-1.0
2,999,350	-		PFLU_RS13265	0.28	-1.2
2,999,350	-		PFLU_RS13265	0.28	-2.5
2,999,353	+		PFLU_RS13265	0.28	+1.8
2,999,353	+		PFLU_RS13265	0.28	+1.0
2,999,353	+		PFLU_RS13265	0.28	+1.0
2,999,353	+		PFLU_RS13265	0.28	+0.2
2,999,353	+		PFLU_RS13265	0.28	-1.0
2,999,353	+		PFLU_RS13265	0.28	-1.1
2,999,354	-		PFLU_RS13265	0.28	-0.3
2,999,354	-		PFLU_RS13265	0.28	+0.7
2,999,354	-		PFLU_RS13265	0.28	+1.4
2,999,354	-		PFLU_RS13265	0.28	-0.1
2,999,354	-		PFLU_RS13265	0.28	-2.1
2,999,354	-		PFLU_RS13265	0.28	+1.0
2,999,354	-		PFLU_RS13265	0.28	+1.8
2,999,394	+		PFLU_RS13265	0.35	-1.8
2,999,394	+		PFLU_RS13265	0.35	-1.2
2,999,394	+		PFLU_RS13265	0.35	-0.1
2,999,395	-		PFLU_RS13265	0.35	+2.1
2,999,395	-		PFLU_RS13265	0.35	+0.0
2,999,536	+		PFLU_RS13265	0.59	-0.2
2,999,536	+		PFLU_RS13265	0.59	-0.2
2,999,537	-		PFLU_RS13265	0.60	+0.4
2,999,628	+		PFLU_RS13265	0.75	-1.6
2,999,628	+		PFLU_RS13265	0.75	-0.9
2,999,628	+		PFLU_RS13265	0.75	+1.5
2,999,628	+		PFLU_RS13265	0.75	-1.9
2,999,628	+		PFLU_RS13265	0.75	+0.6
2,999,628	+		PFLU_RS13265	0.75	+2.0
2,999,628	+		PFLU_RS13265	0.75	-1.5
2,999,628	+		PFLU_RS13265	0.75	+0.1
2,999,628	+		PFLU_RS13265	0.75	+0.7
2,999,629	-		PFLU_RS13265	0.75	+1.2
2,999,629	-		PFLU_RS13265	0.75	+1.2
2,999,629	-		PFLU_RS13265	0.75	-0.8
2,999,629	-		PFLU_RS13265	0.75	+2.4
2,999,629	-		PFLU_RS13265	0.75	+1.4
2,999,629	-		PFLU_RS13265	0.75	-0.7
2,999,629	-		PFLU_RS13265	0.75	+0.7
2,999,702	+		PFLU_RS13265	0.88	-3.0
2,999,723	+				+0.7
2,999,762	+				-0.1
2,999,762	+				+2.0
2,999,762	+				-0.1
2,999,762	+				+0.0
2,999,762	+				-2.2
2,999,762	+				-0.7
2,999,762	+				+1.9
2,999,762	+				+1.0
2,999,762	+				-0.6
2,999,762	+				-0.6
2,999,762	+				-1.0
2,999,762	+				+1.6
2,999,763	-				+0.6
2,999,763	-				-1.5
2,999,763	-				-0.6
2,999,763	-				-1.6
2,999,763	-				+0.9
2,999,763	-				-0.3
2,999,763	-				-0.5
2,999,864	-				-1.5
2,999,884	+				-0.3
2,999,907	+				+1.3
2,999,907	+				+1.0
2,999,908	-				-0.6
3,000,003	+		PFLU_RS13270	0.21	-2.5
3,000,004	-		PFLU_RS13270	0.21	+1.9
3,000,004	-		PFLU_RS13270	0.21	+0.4
3,000,004	-		PFLU_RS13270	0.21	+1.7
3,000,004	-		PFLU_RS13270	0.21	+0.6
3,000,004	-		PFLU_RS13270	0.21	-1.0
3,000,004	-		PFLU_RS13270	0.21	+0.1
3,000,006	+		PFLU_RS13270	0.21	+0.1
3,000,006	+		PFLU_RS13270	0.21	-2.3
3,000,006	+		PFLU_RS13270	0.21	+1.5
3,000,006	+		PFLU_RS13270	0.21	-3.2
3,000,006	+		PFLU_RS13270	0.21	+0.5
3,000,006	+		PFLU_RS13270	0.21	+1.8
3,000,006	+		PFLU_RS13270	0.21	+1.5
3,000,006	+		PFLU_RS13270	0.21	+0.7
3,000,007	-		PFLU_RS13270	0.21	-1.1
3,000,007	-		PFLU_RS13270	0.21	+1.4
3,000,007	-		PFLU_RS13270	0.21	-0.2
3,000,007	-		PFLU_RS13270	0.21	+3.3
3,000,007	-		PFLU_RS13270	0.21	-0.8
3,000,007	-		PFLU_RS13270	0.21	+0.9
3,000,007	-		PFLU_RS13270	0.21	+0.4
3,000,010	+		PFLU_RS13270	0.22	+0.2
3,000,011	-		PFLU_RS13270	0.22	+0.1
3,000,011	-		PFLU_RS13270	0.22	+1.2
3,000,131	-		PFLU_RS13270	0.36	-0.3
3,000,193	+		PFLU_RS13270	0.43	-0.4
3,000,193	+		PFLU_RS13270	0.43	+1.9
3,000,194	-		PFLU_RS13270	0.43	+0.9
3,000,375	+		PFLU_RS13270	0.65	-1.1
3,000,376	-		PFLU_RS13270	0.65	-1.0
3,000,406	+		PFLU_RS13270	0.69	-0.2
3,000,406	+		PFLU_RS13270	0.69	-1.5
3,000,418	+		PFLU_RS13270	0.70	+3.0
3,000,419	-		PFLU_RS13270	0.70	+0.3
3,000,419	-		PFLU_RS13270	0.70	+0.1
3,000,422	+		PFLU_RS13270	0.71	-2.7
3,000,422	+		PFLU_RS13270	0.71	-3.0
3,000,422	+		PFLU_RS13270	0.71	+0.0
3,000,422	+		PFLU_RS13270	0.71	-0.3
3,000,423	-		PFLU_RS13270	0.71	-2.0
3,000,559	+		PFLU_RS13270	0.87	-1.5
3,000,560	-		PFLU_RS13270	0.87	+1.2
3,000,583	+		PFLU_RS13270	0.90	-0.6
3,000,583	+		PFLU_RS13270	0.90	+3.6
3,000,584	-		PFLU_RS13270	0.90	+1.6
3,000,686	+				-0.1
3,000,686	+				+1.4
3,000,686	+				-2.0
3,000,686	+				-2.5
3,000,686	+				+2.1
3,000,687	-				-2.1
3,000,696	+				-1.3
3,000,696	+				+0.1
3,000,696	+				-0.6
3,000,697	-				+1.7
3,000,724	+				-2.8
3,000,724	+				-1.6
3,000,724	+				-3.7
3,000,725	-				-0.2
3,000,859	+		PFLU_RS13275	0.18	-1.9
3,000,860	-		PFLU_RS13275	0.18	-0.8
3,000,902	+		PFLU_RS13275	0.25	-1.0
3,000,902	+		PFLU_RS13275	0.25	+1.0
3,000,903	-		PFLU_RS13275	0.25	-0.0
3,000,917	+		PFLU_RS13275	0.27	-1.2
3,000,917	+		PFLU_RS13275	0.27	+0.9
3,000,917	+		PFLU_RS13275	0.27	+2.2
3,000,917	+		PFLU_RS13275	0.27	+0.4
3,000,917	+		PFLU_RS13275	0.27	-0.1
3,000,918	-		PFLU_RS13275	0.27	-1.2
3,000,918	-		PFLU_RS13275	0.27	-0.1
3,000,977	+		PFLU_RS13275	0.37	-0.6
3,000,977	+		PFLU_RS13275	0.37	+0.7
3,000,977	+		PFLU_RS13275	0.37	-3.2
3,000,980	+		PFLU_RS13275	0.37	-0.3
3,000,980	+		PFLU_RS13275	0.37	+1.7
3,000,981	-		PFLU_RS13275	0.37	-0.3
3,000,992	+		PFLU_RS13275	0.39	+0.3
3,000,993	-		PFLU_RS13275	0.39	-1.1
3,000,993	-		PFLU_RS13275	0.39	-1.9
3,001,250	+		PFLU_RS13275	0.79	+0.6
3,001,250	+		PFLU_RS13275	0.79	+0.4
3,001,251	-		PFLU_RS13275	0.79	-2.6
3,001,251	-		PFLU_RS13275	0.79	+2.5
3,001,251	-		PFLU_RS13275	0.79	+0.2
3,001,251	-		PFLU_RS13275	0.79	+0.4
3,001,251	-		PFLU_RS13275	0.79	-2.1
3,001,383	+				+0.8
3,001,383	+				+0.2
3,001,384	-				-1.2
3,001,411	+				-0.6
3,001,411	+				-2.6
3,001,411	+				+0.5
3,001,412	-				+1.8
3,001,418	+				+0.6
3,001,418	+				-1.6
3,001,419	-				+0.2
3,001,432	+				-0.0
3,001,433	-				-1.2
3,001,433	-				+1.0
3,001,597	+		PFLU_RS31595	0.34	-1.3
3,001,601	+		PFLU_RS31595	0.36	+1.8
3,001,601	+		PFLU_RS31595	0.36	-1.1
3,001,601	+		PFLU_RS31595	0.36	+0.4
3,001,601	+		PFLU_RS31595	0.36	+3.7
3,001,601	+		PFLU_RS31595	0.36	+1.4
3,001,601	+		PFLU_RS31595	0.36	-0.7
3,001,601	+		PFLU_RS31595	0.36	-2.0