Strain Fitness in Pseudomonas fluorescens SBW25 around PFLU_RS13005

Experiment: acetate (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	acetate (C)
2,936,916	+				-2.4
2,936,916	+				-1.9
2,936,916	+				-0.6
2,936,917	-				-0.5
2,936,917	-				+0.7
2,936,917	-				-1.2
2,936,917	-				-0.6
2,936,930	-				-2.1
2,937,019	+				-3.1
2,937,020	-				-1.6
2,937,142	+				+0.2
2,937,142	+				-2.9
2,937,142	+				+0.4
2,937,143	-				-0.9
2,937,185	+				+1.4
2,937,185	+				-3.2
2,937,186	-				+0.9
2,937,186	-				+1.4
2,937,227	+				-2.1
2,937,227	+				-1.1
2,937,246	-				+1.7
2,937,246	-				-0.6
2,937,261	+				-0.6
2,937,280	-				+0.0
2,937,356	+				+0.2
2,937,356	+				-0.8
2,937,356	+				-2.1
2,937,357	-				-1.9
2,937,402	+				+2.4
2,937,402	+				-1.3
2,937,402	+				-2.1
2,937,402	+				-3.2
2,937,403	-				+0.9
2,937,403	-				-0.2
2,937,403	-				+0.0
2,937,403	-				+0.0
2,937,490	-				-0.9
2,937,490	-				-0.9
2,937,490	-				-0.1
2,937,547	-				-2.3
2,937,618	+				+0.7
2,937,618	+				+0.3
2,937,618	+				-0.5
2,937,619	-				-2.5
2,937,619	-				-0.3
2,937,619	-				+1.2
2,937,663	+		PFLU_RS13005	0.11	-0.3
2,937,663	+		PFLU_RS13005	0.11	+1.4
2,937,664	-		PFLU_RS13005	0.11	+0.8
2,937,664	-		PFLU_RS13005	0.11	-1.4
2,937,664	-		PFLU_RS13005	0.11	+1.9
2,937,664	-		PFLU_RS13005	0.11	-0.3
2,937,664	-		PFLU_RS13005	0.11	+0.4
2,937,868	-		PFLU_RS13005	0.20	-0.6
2,937,868	-		PFLU_RS13005	0.20	-2.7
2,937,930	+		PFLU_RS13005	0.23	+0.3
2,937,930	+		PFLU_RS13005	0.23	-1.2
2,938,103	+		PFLU_RS13005	0.30	+1.0
2,938,107	+		PFLU_RS13005	0.31	-1.0
2,938,107	+		PFLU_RS13005	0.31	+0.6
2,938,107	+		PFLU_RS13005	0.31	-2.2
2,938,107	+		PFLU_RS13005	0.31	+0.4
2,938,107	+		PFLU_RS13005	0.31	+0.1
2,938,108	-		PFLU_RS13005	0.31	-0.3
2,938,108	-		PFLU_RS13005	0.31	-2.2
2,938,108	-		PFLU_RS13005	0.31	+1.5
2,938,108	-		PFLU_RS13005	0.31	+2.3
2,938,108	-		PFLU_RS13005	0.31	-0.9
2,938,202	+		PFLU_RS13005	0.35	+1.7
2,938,203	-		PFLU_RS13005	0.35	+0.4
2,938,227	+		PFLU_RS13005	0.36	-1.8
2,938,227	+		PFLU_RS13005	0.36	-0.5
2,938,227	+		PFLU_RS13005	0.36	+0.7
2,938,227	+		PFLU_RS13005	0.36	+0.1
2,938,228	-		PFLU_RS13005	0.36	+1.6
2,938,228	-		PFLU_RS13005	0.36	+1.1
2,938,228	-		PFLU_RS13005	0.36	+0.5
2,938,228	-		PFLU_RS13005	0.36	+1.8
2,938,228	-		PFLU_RS13005	0.36	+1.1
2,938,265	+		PFLU_RS13005	0.38	+1.1
2,938,266	-		PFLU_RS13005	0.38	+0.7
2,938,266	-		PFLU_RS13005	0.38	-1.0
2,938,266	-		PFLU_RS13005	0.38	-0.5
2,938,266	-		PFLU_RS13005	0.38	+1.5
2,938,327	-		PFLU_RS13005	0.40	-1.3
2,938,327	-		PFLU_RS13005	0.40	-2.4
2,938,426	-		PFLU_RS13005	0.45	+0.2
2,938,452	+		PFLU_RS13005	0.46	-1.5
2,938,459	+		PFLU_RS13005	0.46	-2.2
2,938,560	+		PFLU_RS13005	0.50	-0.2
2,938,560	+		PFLU_RS13005	0.50	+0.2
2,938,560	+		PFLU_RS13005	0.50	+1.0
2,938,560	+		PFLU_RS13005	0.50	+2.5
2,938,560	+		PFLU_RS13005	0.50	-2.3
2,938,560	+		PFLU_RS13005	0.50	-1.9
2,938,560	+		PFLU_RS13005	0.50	-0.3
2,938,560	+		PFLU_RS13005	0.50	+0.8
2,938,561	-		PFLU_RS13005	0.50	-1.2
2,938,561	-		PFLU_RS13005	0.50	+0.9
2,938,561	-		PFLU_RS13005	0.50	-0.5
2,938,561	-		PFLU_RS13005	0.50	+1.4
2,938,561	-		PFLU_RS13005	0.50	+1.5
2,938,561	-		PFLU_RS13005	0.50	+0.4
2,938,561	-		PFLU_RS13005	0.50	-1.9
2,938,561	-		PFLU_RS13005	0.50	+0.7
2,938,561	-		PFLU_RS13005	0.50	+2.3
2,938,561	-		PFLU_RS13005	0.50	-0.2
2,938,561	-		PFLU_RS13005	0.50	+1.4
2,938,561	-		PFLU_RS13005	0.50	+2.2
2,938,561	-		PFLU_RS13005	0.50	+0.1
2,938,561	-		PFLU_RS13005	0.50	-2.3
2,938,561	-		PFLU_RS13005	0.50	+3.1
2,938,639	+		PFLU_RS13005	0.54	+1.1
2,938,639	+		PFLU_RS13005	0.54	+2.3
2,938,639	+		PFLU_RS13005	0.54	+0.1
2,938,639	+		PFLU_RS13005	0.54	-3.1
2,938,640	-		PFLU_RS13005	0.54	+0.2
2,938,640	-		PFLU_RS13005	0.54	-0.3
2,938,680	+		PFLU_RS13005	0.56	-0.9
2,938,704	+		PFLU_RS13005	0.57	+0.9
2,938,704	+		PFLU_RS13005	0.57	+0.4
2,938,704	+		PFLU_RS13005	0.57	+1.6
2,938,705	-		PFLU_RS13005	0.57	-0.6
2,938,705	-		PFLU_RS13005	0.57	-0.9
2,938,865	+		PFLU_RS13005	0.64	+1.8
2,938,865	+		PFLU_RS13005	0.64	+0.6
2,938,865	+		PFLU_RS13005	0.64	-1.1
2,938,865	+		PFLU_RS13005	0.64	+0.3
2,938,865	+		PFLU_RS13005	0.64	-1.6
2,938,865	+		PFLU_RS13005	0.64	-0.5
2,938,865	+		PFLU_RS13005	0.64	-0.3
2,938,865	+		PFLU_RS13005	0.64	-1.6
2,938,866	-		PFLU_RS13005	0.64	+0.1
2,938,866	-		PFLU_RS13005	0.64	+1.0
2,938,866	-		PFLU_RS13005	0.64	-1.3
2,938,866	-		PFLU_RS13005	0.64	+2.2
2,938,866	-		PFLU_RS13005	0.64	+1.7
2,938,866	-		PFLU_RS13005	0.64	+1.1
2,938,866	-		PFLU_RS13005	0.64	-0.9
2,938,866	-		PFLU_RS13005	0.64	-1.4
2,938,866	-		PFLU_RS13005	0.64	+3.1
2,938,866	-		PFLU_RS13005	0.64	-2.0
2,938,869	+		PFLU_RS13005	0.64	-0.5
2,938,869	+		PFLU_RS13005	0.64	-0.2
2,938,869	+		PFLU_RS13005	0.64	+1.1
2,938,869	+		PFLU_RS13005	0.64	-0.4
2,938,869	+		PFLU_RS13005	0.64	+1.0
2,938,869	+		PFLU_RS13005	0.64	+1.6
2,938,869	+		PFLU_RS13005	0.64	-1.5
2,938,870	-		PFLU_RS13005	0.64	-2.4
2,938,870	-		PFLU_RS13005	0.64	-0.9
2,938,870	-		PFLU_RS13005	0.64	-1.2
2,938,870	-		PFLU_RS13005	0.64	-0.5
2,938,870	-		PFLU_RS13005	0.64	-0.3
2,938,870	-		PFLU_RS13005	0.64	-2.2
2,938,870	-		PFLU_RS13005	0.64	-1.9
2,938,872	+		PFLU_RS13005	0.64	-0.9
2,938,872	+		PFLU_RS13005	0.64	-2.6
2,938,873	-		PFLU_RS13005	0.64	+1.0
2,938,935	+		PFLU_RS13005	0.67	+0.4
2,938,935	+		PFLU_RS13005	0.67	+0.4
2,938,935	+		PFLU_RS13005	0.67	+0.7
2,938,935	+		PFLU_RS13005	0.67	+2.0
2,938,936	-		PFLU_RS13005	0.67	-2.2
2,938,936	-		PFLU_RS13005	0.67	+2.4
2,938,936	-		PFLU_RS13005	0.67	+1.9
2,939,009	+		PFLU_RS13005	0.70	-0.3
2,939,059	-		PFLU_RS13005	0.72	-3.2
2,939,059	-		PFLU_RS13005	0.72	+0.2
2,939,079	-		PFLU_RS13005	0.73	-0.2
2,939,079	-		PFLU_RS13005	0.73	+2.4
2,939,199	+		PFLU_RS13005	0.78	+2.1
2,939,199	+		PFLU_RS13005	0.78	+0.2
2,939,199	+		PFLU_RS13005	0.78	+0.5
2,939,200	-		PFLU_RS13005	0.78	-0.7
2,939,200	-		PFLU_RS13005	0.78	-2.1
2,939,200	-		PFLU_RS13005	0.78	+2.4
2,939,230	+		PFLU_RS13005	0.80	+1.7
2,939,230	+		PFLU_RS13005	0.80	-1.6
2,939,231	-		PFLU_RS13005	0.80	+1.5
2,939,355	+		PFLU_RS13005	0.85	+1.4
2,939,355	+		PFLU_RS13005	0.85	+0.0
2,939,356	-		PFLU_RS13005	0.85	+0.4
2,939,356	-		PFLU_RS13005	0.85	-0.7
2,939,384	+		PFLU_RS13005	0.86	+0.7
2,939,384	+		PFLU_RS13005	0.86	-2.4
2,939,385	-		PFLU_RS13005	0.86	-2.2
2,939,589	-				-2.8
2,939,589	-				+0.6
2,939,611	-				+1.4
2,939,631	+				+1.7
2,939,632	-				-0.9
2,939,632	-				-1.9
2,939,683	-				+0.9
2,939,713	-				-1.6
2,939,767	+				-0.2
2,939,791	+				-0.6
2,939,893	+				-3.3
2,939,893	+				-0.6
2,939,893	+				-0.6
2,939,893	+				-2.3
2,939,893	+				+2.3
2,939,893	+				-0.2
2,939,893	+				-1.9
2,939,893	+				-0.9
2,939,893	+				+1.6
2,939,893	+				+1.5
2,939,893	+				-0.9
2,939,893	+				-0.7
2,939,893	+				-1.2
2,939,893	+				-1.3
2,939,893	+				+0.1
2,939,893	+				-2.8
2,939,893	+				+0.7
2,939,894	-				+0.9
2,939,894	-				+2.4
2,939,894	-				+1.2
2,939,894	-				-0.1
2,939,894	-				-0.2
2,939,894	-				+0.1
2,939,894	-				+0.4
2,939,894	-				+1.3
2,939,894	-				+0.4
2,939,894	-				-1.5
2,939,896	-				+2.2
2,939,896	-				+1.9
2,939,896	-				+0.6
2,939,896	-				+0.4
2,939,896	-				-0.2
2,939,896	-				+0.1
2,939,896	-				-1.6
2,939,896	-				-0.9
2,939,896	-				+1.2
2,939,896	-				-2.9
2,939,896	-				+0.2
2,939,896	-				+2.1
2,939,896	-				+4.5
2,939,896	-				-0.7
2,939,896	-				+0.6
2,939,896	-				+1.2
2,939,896	-				-0.6
2,939,896	-				-1.4
2,939,896	-				+3.5
2,939,896	-				-0.3
2,939,896	-				+0.9
2,939,896	-				-2.2
2,939,896	-				-0.9
2,939,896	-				-1.6
2,939,896	-				+0.9
2,939,896	-				+1.6
2,939,896	-				-2.0
2,939,896	-				-1.6
2,939,896	-				+1.2
2,939,896	-				-0.4
2,939,896	-				-1.5
2,939,896	-				-0.4
2,939,896	-				-0.6
2,939,896	-				+0.8
2,939,896	-				+0.5
2,939,896	-				-1.6
2,939,896	-				+2.1
2,939,965	+				+1.4
2,939,965	+				-0.3
2,939,965	+				+0.1
2,939,965	+				+1.2
2,939,965	+				+0.6
2,939,969	+				-0.1
2,940,010	+				+0.2
2,940,011	-				-0.7
2,940,011	-				+0.5
2,940,011	-				+1.7
2,940,011	-				+0.9
2,940,017	+				-2.5
2,940,018	-				+0.8
2,940,069	+				-0.2
2,940,070	-				-1.4
2,940,080	+				+2.5
2,940,091	-				+1.5
2,940,157	+				-0.6
2,940,236	-		PFLU_RS13010	0.20	-1.6
2,940,256	+		PFLU_RS13010	0.23	-2.2
2,940,256	+		PFLU_RS13010	0.23	+2.0
2,940,320	-		PFLU_RS13010	0.34	+1.1
2,940,320	-		PFLU_RS13010	0.34	-0.4
2,940,320	-		PFLU_RS13010	0.34	-0.4
2,940,367	+		PFLU_RS13010	0.42	+2.0
2,940,382	-		PFLU_RS13010	0.45	-1.9
2,940,466	+		PFLU_RS13010	0.59	-1.2
2,940,466	+		PFLU_RS13010	0.59	-1.8
2,940,466	+		PFLU_RS13010	0.59	-1.3
2,940,466	+		PFLU_RS13010	0.59	+0.7
2,940,466	+		PFLU_RS13010	0.59	+2.2
2,940,466	+		PFLU_RS13010	0.59	-1.2
2,940,467	-		PFLU_RS13010	0.59	-0.4
2,940,467	-		PFLU_RS13010	0.59	-2.5
2,940,467	-		PFLU_RS13010	0.59	+2.4
2,940,467	-		PFLU_RS13010	0.59	-0.3
2,940,467	-		PFLU_RS13010	0.59	-0.4
2,940,467	-		PFLU_RS13010	0.59	-1.9
2,940,467	-		PFLU_RS13010	0.59	+0.4
2,940,467	-		PFLU_RS13010	0.59	-1.3
2,940,469	+		PFLU_RS13010	0.59	-2.3
2,940,469	+		PFLU_RS13010	0.59	+0.7
2,940,469	+		PFLU_RS13010	0.59	+0.8
2,940,469	+		PFLU_RS13010	0.59	-1.2
2,940,470	-		PFLU_RS13010	0.60	+0.5
2,940,470	-		PFLU_RS13010	0.60	+3.0
2,940,470	-		PFLU_RS13010	0.60	-1.6
2,940,640	-		PFLU_RS13010	0.89	+0.1