Strain Fitness in Pseudomonas fluorescens SBW25 around PFLU_RS12535

Experiment: acetate (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	acetate (C)
2,828,104	+		PFLU_RS12530	0.15	+0.4
2,828,105	-		PFLU_RS12530	0.15	-0.1
2,828,168	+		PFLU_RS12530	0.22	+0.5
2,828,168	+		PFLU_RS12530	0.22	+0.4
2,828,169	-		PFLU_RS12530	0.22	-0.4
2,828,427	+		PFLU_RS12530	0.51	+0.6
2,828,427	+		PFLU_RS12530	0.51	-0.6
2,828,427	+		PFLU_RS12530	0.51	-1.3
2,828,427	+		PFLU_RS12530	0.51	+1.0
2,828,427	+		PFLU_RS12530	0.51	-2.1
2,828,428	-		PFLU_RS12530	0.51	-0.4
2,828,428	-		PFLU_RS12530	0.51	+1.9
2,828,428	-		PFLU_RS12530	0.51	-2.5
2,828,431	+		PFLU_RS12530	0.52	-0.1
2,828,606	+		PFLU_RS12530	0.71	+1.5
2,828,606	+		PFLU_RS12530	0.71	+0.5
2,828,607	-		PFLU_RS12530	0.72	-2.5
2,828,607	-		PFLU_RS12530	0.72	-0.8
2,828,607	-		PFLU_RS12530	0.72	-1.5
2,828,607	-		PFLU_RS12530	0.72	+0.1
2,828,699	+		PFLU_RS12530	0.82	-0.5
2,828,699	+		PFLU_RS12530	0.82	-0.5
2,828,700	-		PFLU_RS12530	0.82	+0.0
2,828,700	-		PFLU_RS12530	0.82	-3.1
2,828,700	-		PFLU_RS12530	0.82	+2.3
2,828,700	-		PFLU_RS12530	0.82	+0.1
2,828,700	-		PFLU_RS12530	0.82	+2.1
2,828,833	+				+1.0
2,828,880	+				+0.7
2,828,911	+				+1.5
2,828,911	+				+1.4
2,828,911	+				-1.8
2,828,911	+				+2.2
2,828,912	-				-0.2
2,828,939	+				-1.3
2,828,939	+				+1.2
2,828,940	-				+1.5
2,828,940	-				-0.1
2,828,940	-				-0.1
2,828,960	+				-0.7
2,828,961	-				-3.0
2,828,961	-				+1.6
2,828,961	-				+1.4
2,828,961	-				-2.3
2,828,961	-				-0.7
2,829,044	+				+0.3
2,829,045	-				+0.5
2,829,045	-				-1.8
2,829,055	-				-0.1
2,829,069	-				+1.1
2,829,153	+				+1.5
2,829,153	+				+0.7
2,829,153	+				+0.7
2,829,153	+				+0.3
2,829,154	-				-3.2
2,829,154	-				-0.3
2,829,154	-				-1.9
2,829,154	-				+1.1
2,829,154	-				+0.6
2,829,168	+				+1.6
2,829,168	+				+1.8
2,829,168	+				+1.7
2,829,169	-				+0.9
2,829,225	+		PFLU_RS12535	0.14	-0.7
2,829,225	+		PFLU_RS12535	0.14	+1.5
2,829,226	-		PFLU_RS12535	0.14	+0.0
2,829,233	-		PFLU_RS12535	0.15	-0.8
2,829,448	-		PFLU_RS12535	0.35	+0.1
2,829,448	-		PFLU_RS12535	0.35	+0.4
2,829,624	+		PFLU_RS12535	0.51	-3.0
2,829,624	+		PFLU_RS12535	0.51	+1.0
2,829,624	+		PFLU_RS12535	0.51	-0.7
2,829,625	-		PFLU_RS12535	0.51	+1.0
2,829,625	-		PFLU_RS12535	0.51	+0.8
2,829,664	-		PFLU_RS12535	0.55	+2.1
2,829,702	+		PFLU_RS12535	0.58	-2.1
2,829,703	-		PFLU_RS12535	0.58	-0.3
2,829,703	-		PFLU_RS12535	0.58	+1.5
2,829,711	+		PFLU_RS12535	0.59	+0.5
2,829,711	+		PFLU_RS12535	0.59	+1.6
2,829,711	+		PFLU_RS12535	0.59	+1.4
2,829,711	+		PFLU_RS12535	0.59	+0.9
2,829,711	+		PFLU_RS12535	0.59	-3.1
2,829,712	-		PFLU_RS12535	0.59	+0.8
2,829,712	-		PFLU_RS12535	0.59	-0.2
2,829,729	+		PFLU_RS12535	0.61	+2.1
2,829,729	+		PFLU_RS12535	0.61	-1.3
2,829,729	+		PFLU_RS12535	0.61	+0.3
2,829,729	+		PFLU_RS12535	0.61	+0.2
2,829,729	+		PFLU_RS12535	0.61	+1.9
2,829,729	+		PFLU_RS12535	0.61	+0.8
2,829,730	-		PFLU_RS12535	0.61	+0.3
2,829,730	-		PFLU_RS12535	0.61	-2.3
2,829,755	+		PFLU_RS12535	0.63	+0.5
2,829,755	+		PFLU_RS12535	0.63	-2.1
2,829,756	-		PFLU_RS12535	0.63	-0.1
2,829,936	+		PFLU_RS12535	0.80	-0.6
2,829,936	+		PFLU_RS12535	0.80	+1.2
2,829,937	-		PFLU_RS12535	0.80	-0.2
2,829,937	-		PFLU_RS12535	0.80	-0.5
2,829,985	-		PFLU_RS12535	0.84	-2.4
2,830,080	+				-1.1
2,830,081	-				+2.3
2,830,151	+				+1.9
2,830,151	+				-0.1
2,830,152	-				-1.9
2,830,184	+				-1.1
2,830,184	+				+0.6
2,830,184	+				-0.4
2,830,185	-				-0.8
2,830,187	+				+1.0
2,830,187	+				+0.3
2,830,607	+		PFLU_RS12540	0.35	-2.1
2,830,670	+		PFLU_RS12540	0.40	-0.7
2,830,670	+		PFLU_RS12540	0.40	+3.1
2,830,670	+		PFLU_RS12540	0.40	+1.3
2,830,671	-		PFLU_RS12540	0.40	+1.9
2,830,671	-		PFLU_RS12540	0.40	+0.9
2,830,671	-		PFLU_RS12540	0.40	+0.4
2,830,671	-		PFLU_RS12540	0.40	+3.6
2,830,726	-		PFLU_RS12540	0.44	+0.5
2,830,928	+		PFLU_RS12540	0.60	-2.3
2,830,928	+		PFLU_RS12540	0.60	+0.9
2,830,928	+		PFLU_RS12540	0.60	-0.9
2,830,928	+		PFLU_RS12540	0.60	-1.5
2,830,928	+		PFLU_RS12540	0.60	+0.5
2,830,928	+		PFLU_RS12540	0.60	-0.3
2,830,928	+		PFLU_RS12540	0.60	-1.7
2,830,928	+		PFLU_RS12540	0.60	+0.3
2,830,929	-		PFLU_RS12540	0.60	+1.8
2,830,929	-		PFLU_RS12540	0.60	-2.2
2,830,929	-		PFLU_RS12540	0.60	+1.1
2,830,929	-		PFLU_RS12540	0.60	-0.2
2,830,929	-		PFLU_RS12540	0.60	+0.9
2,830,929	-		PFLU_RS12540	0.60	+2.0
2,830,929	-		PFLU_RS12540	0.60	+0.1
2,830,929	-		PFLU_RS12540	0.60	+1.6
2,830,929	-		PFLU_RS12540	0.60	+0.8
2,831,021	+		PFLU_RS12540	0.67	-1.1
2,831,021	+		PFLU_RS12540	0.67	-0.4
2,831,072	+		PFLU_RS12540	0.71	+0.2
2,831,072	+		PFLU_RS12540	0.71	-2.3
2,831,072	+		PFLU_RS12540	0.71	-0.6
2,831,073	-		PFLU_RS12540	0.71	+0.4
2,831,105	+		PFLU_RS12540	0.73	+0.5
2,831,105	+		PFLU_RS12540	0.73	+3.8
2,831,105	+		PFLU_RS12540	0.73	+0.3
2,831,105	+		PFLU_RS12540	0.73	-1.8
2,831,105	+		PFLU_RS12540	0.73	+2.5
2,831,105	+		PFLU_RS12540	0.73	+1.1
2,831,105	+		PFLU_RS12540	0.73	+0.3
2,831,106	-		PFLU_RS12540	0.73	-0.8
2,831,106	-		PFLU_RS12540	0.73	-0.9
2,831,106	-		PFLU_RS12540	0.73	-0.1
2,831,106	-		PFLU_RS12540	0.73	-2.3
2,831,107	+		PFLU_RS12540	0.74	-2.7
2,831,107	+		PFLU_RS12540	0.74	-4.1
2,831,107	+		PFLU_RS12540	0.74	+2.8
2,831,107	+		PFLU_RS12540	0.74	-0.1
2,831,107	+		PFLU_RS12540	0.74	+1.5
2,831,107	+		PFLU_RS12540	0.74	+1.1
2,831,108	-		PFLU_RS12540	0.74	+0.9
2,831,108	-		PFLU_RS12540	0.74	+1.3
2,831,108	-		PFLU_RS12540	0.74	+0.5