Strain Fitness in Pseudomonas fluorescens SBW25 around PFLU_RS12180

Experiment: acetate (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	acetate (C)
2,701,752	+				-2.5
2,701,752	+				+1.0
2,701,752	+				+1.3
2,701,752	+				-0.4
2,701,752	+				-1.6
2,701,752	+				-0.3
2,701,776	+				+0.2
2,701,776	+				-0.0
2,701,776	+				-1.7
2,701,803	+				+0.6
2,701,875	+				-2.6
2,701,876	-				+0.9
2,701,888	-				-1.9
2,701,888	-				+0.9
2,701,897	-				+1.3
2,701,962	+				-2.7
2,702,055	-		PFLU_RS12180	0.13	-0.8
2,702,055	-		PFLU_RS12180	0.13	+1.7
2,702,057	+		PFLU_RS12180	0.13	+0.8
2,702,058	-		PFLU_RS12180	0.13	+0.6
2,702,063	+		PFLU_RS12180	0.13	-3.0
2,702,063	+		PFLU_RS12180	0.13	+0.1
2,702,063	+		PFLU_RS12180	0.13	-0.3
2,702,063	+		PFLU_RS12180	0.13	-0.3
2,702,074	-		PFLU_RS12180	0.14	-1.4
2,702,121	-		PFLU_RS12180	0.18	-0.6
2,702,121	-		PFLU_RS12180	0.18	+1.6
2,702,121	-		PFLU_RS12180	0.18	-2.6
2,702,173	+		PFLU_RS12180	0.23	-1.3
2,702,173	+		PFLU_RS12180	0.23	+2.4
2,702,174	-		PFLU_RS12180	0.23	-0.6
2,702,174	-		PFLU_RS12180	0.23	-0.8
2,702,226	+		PFLU_RS12180	0.28	+0.6
2,702,237	-		PFLU_RS12180	0.29	-1.4
2,702,237	-		PFLU_RS12180	0.29	+0.6
2,702,261	+		PFLU_RS12180	0.31	+2.4
2,702,262	-		PFLU_RS12180	0.31	-1.4
2,702,313	+		PFLU_RS12180	0.35	+1.0
2,702,314	-		PFLU_RS12180	0.35	-2.8
2,702,314	-		PFLU_RS12180	0.35	+1.9
2,702,314	-		PFLU_RS12180	0.35	-0.4
2,702,350	+		PFLU_RS12180	0.38	-1.9
2,702,351	-		PFLU_RS12180	0.39	-2.0
2,702,456	+		PFLU_RS12180	0.48	+1.4
2,702,456	+		PFLU_RS12180	0.48	+2.0
2,702,456	+		PFLU_RS12180	0.48	-1.6
2,702,457	-		PFLU_RS12180	0.48	+0.8
2,702,457	-		PFLU_RS12180	0.48	-0.8
2,702,458	+		PFLU_RS12180	0.48	-0.7
2,702,458	+		PFLU_RS12180	0.48	-3.0
2,702,459	-		PFLU_RS12180	0.48	+0.7
2,702,459	-		PFLU_RS12180	0.48	+1.0
2,702,459	-		PFLU_RS12180	0.48	-2.5
2,702,459	-		PFLU_RS12180	0.48	+1.2
2,702,459	-		PFLU_RS12180	0.48	-0.4
2,702,469	+		PFLU_RS12180	0.49	+2.1
2,702,469	+		PFLU_RS12180	0.49	+2.1
2,702,470	-		PFLU_RS12180	0.49	-2.7
2,702,470	-		PFLU_RS12180	0.49	+1.8
2,702,470	-		PFLU_RS12180	0.49	-0.9
2,702,520	+		PFLU_RS12180	0.53	+2.3
2,702,520	+		PFLU_RS12180	0.53	-1.6
2,702,521	-		PFLU_RS12180	0.53	-1.5
2,702,521	-		PFLU_RS12180	0.53	-2.6
2,702,524	+		PFLU_RS12180	0.54	-0.3
2,702,525	-		PFLU_RS12180	0.54	-1.4
2,702,525	-		PFLU_RS12180	0.54	+1.7
2,702,563	+		PFLU_RS12180	0.57	+1.9
2,702,563	+		PFLU_RS12180	0.57	-1.4
2,702,589	+		PFLU_RS12180	0.59	+1.6
2,702,589	+		PFLU_RS12180	0.59	+2.7
2,702,589	+		PFLU_RS12180	0.59	+0.7
2,702,589	+		PFLU_RS12180	0.59	-2.3
2,702,589	+		PFLU_RS12180	0.59	+1.6
2,702,589	+		PFLU_RS12180	0.59	-0.8
2,702,590	-		PFLU_RS12180	0.59	-2.7
2,702,590	-		PFLU_RS12180	0.59	-0.0
2,702,590	-		PFLU_RS12180	0.59	+0.2
2,702,590	-		PFLU_RS12180	0.59	+0.3
2,702,590	-		PFLU_RS12180	0.59	+2.2
2,702,590	-		PFLU_RS12180	0.59	+1.6
2,702,590	-		PFLU_RS12180	0.59	-0.3
2,702,590	-		PFLU_RS12180	0.59	+1.7
2,702,599	+		PFLU_RS12180	0.60	+1.7
2,702,599	+		PFLU_RS12180	0.60	+1.0
2,702,599	+		PFLU_RS12180	0.60	+1.1
2,702,599	+		PFLU_RS12180	0.60	+1.2
2,702,600	-		PFLU_RS12180	0.60	-0.1
2,702,600	-		PFLU_RS12180	0.60	-1.3
2,702,600	-		PFLU_RS12180	0.60	-2.1
2,702,600	-		PFLU_RS12180	0.60	-2.9
2,702,600	-		PFLU_RS12180	0.60	+0.6
2,702,617	+		PFLU_RS12180	0.62	+1.3
2,702,617	+		PFLU_RS12180	0.62	-1.8
2,702,618	-		PFLU_RS12180	0.62	-2.4
2,702,618	-		PFLU_RS12180	0.62	-2.0
2,702,618	-		PFLU_RS12180	0.62	+2.4
2,702,758	+		PFLU_RS12180	0.74	+2.9
2,702,758	+		PFLU_RS12180	0.74	+1.0
2,702,758	+		PFLU_RS12180	0.74	+1.0
2,702,759	-		PFLU_RS12180	0.74	-0.3
2,702,759	-		PFLU_RS12180	0.74	+0.2
2,702,759	-		PFLU_RS12180	0.74	+1.6
2,702,763	+		PFLU_RS12180	0.75	-0.4
2,702,763	+		PFLU_RS12180	0.75	+0.8
2,702,763	+		PFLU_RS12180	0.75	+1.6
2,702,764	-		PFLU_RS12180	0.75	+0.6
2,702,764	-		PFLU_RS12180	0.75	+1.2
2,702,764	-		PFLU_RS12180	0.75	-0.8
2,702,764	-		PFLU_RS12180	0.75	-2.8
2,702,764	-		PFLU_RS12180	0.75	+0.6
2,702,764	-		PFLU_RS12180	0.75	+0.3
2,702,764	-		PFLU_RS12180	0.75	-2.1
2,702,764	-		PFLU_RS12180	0.75	+1.1
2,702,764	-		PFLU_RS12180	0.75	-1.3
2,702,764	-		PFLU_RS12180	0.75	-0.4
2,702,764	-		PFLU_RS12180	0.75	-1.6
2,702,806	-		PFLU_RS12180	0.78	+2.0
2,702,879	+		PFLU_RS12180	0.85	-1.9
2,702,883	+		PFLU_RS12180	0.85	+1.8
2,702,883	+		PFLU_RS12180	0.85	+0.8
2,702,883	+		PFLU_RS12180	0.85	-1.9
2,702,883	+		PFLU_RS12180	0.85	-2.0
2,702,884	-		PFLU_RS12180	0.85	-0.2
2,702,929	-		PFLU_RS12180	0.89	+1.3
2,702,953	+				+0.4
2,702,954	-				+2.7
2,702,971	+				-2.3
2,702,971	+				+1.4
2,703,024	+				+2.7
2,703,037	+				-2.7
2,703,038	-				+0.8
2,703,038	-				-0.1
2,703,053	+				-1.5
2,703,053	+				+1.3
2,703,053	+				+0.7
2,703,054	-				-0.0
2,703,054	-				+0.1
2,703,068	+				-0.7
2,703,069	-				+1.6
2,703,073	+				+1.5
2,703,074	-				+1.9
2,703,086	+				+0.1
2,703,087	-				+1.1
2,703,102	+				+0.5
2,703,102	+				+0.5
2,703,103	-				+2.5
2,703,103	-				+3.1
2,703,103	-				+0.8
2,703,103	-				-1.6
2,703,103	-				+0.5
2,703,113	-				+2.0
2,703,191	-				+1.9
2,703,206	-				-1.7
2,703,228	+				+1.5
2,703,228	+				-0.1
2,703,229	-				+0.0
2,703,229	-				-1.5
2,703,274	+				+3.8
2,703,288	+				-1.5
2,703,288	+				+1.7
2,703,289	-				+1.5
2,703,306	+				+2.0
2,703,335	+				-1.6
2,703,336	-				-0.7
2,703,336	-				+1.2
2,703,529	-		PFLU_RS12185	0.21	-0.6
2,703,547	-		PFLU_RS12185	0.22	-1.5
2,703,601	+		PFLU_RS12185	0.27	-0.0
2,703,642	+		PFLU_RS12185	0.31	+2.5
2,703,650	+		PFLU_RS12185	0.32	-2.5
2,703,650	+		PFLU_RS12185	0.32	+0.9
2,703,817	+		PFLU_RS12185	0.47	-0.7
2,703,818	-		PFLU_RS12185	0.47	+1.6
2,703,818	-		PFLU_RS12185	0.47	+0.3
2,703,898	+		PFLU_RS12185	0.54	-1.3
2,703,919	-		PFLU_RS12185	0.56	-0.0
2,703,919	-		PFLU_RS12185	0.56	+2.2
2,703,923	+		PFLU_RS12185	0.57	-1.0
2,703,991	+		PFLU_RS12185	0.63	-1.5
2,703,991	+		PFLU_RS12185	0.63	-1.3
2,703,991	+		PFLU_RS12185	0.63	+1.2
2,703,991	+		PFLU_RS12185	0.63	+2.2
2,703,992	-		PFLU_RS12185	0.63	-1.0
2,704,047	-		PFLU_RS12185	0.68	+0.5