Strain Fitness in Pseudomonas fluorescens SBW25 around PFLU_RS10685

Experiment: acetate (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	acetate (C)
2,352,689	+		PFLU_RS10680	0.19	+0.9
2,352,689	+		PFLU_RS10680	0.19	-1.5
2,352,689	+		PFLU_RS10680	0.19	+0.6
2,352,689	+		PFLU_RS10680	0.19	-0.9
2,352,690	-		PFLU_RS10680	0.19	-0.2
2,352,690	-		PFLU_RS10680	0.19	-0.2
2,352,690	-		PFLU_RS10680	0.19	+2.2
2,352,690	-		PFLU_RS10680	0.19	+0.2
2,352,723	+		PFLU_RS10680	0.22	-0.7
2,352,723	+		PFLU_RS10680	0.22	-1.2
2,352,723	+		PFLU_RS10680	0.22	-0.2
2,352,724	-		PFLU_RS10680	0.22	-0.1
2,352,724	-		PFLU_RS10680	0.22	+0.5
2,352,724	-		PFLU_RS10680	0.22	+0.1
2,352,724	-		PFLU_RS10680	0.22	+0.2
2,352,724	-		PFLU_RS10680	0.22	-2.5
2,352,724	-		PFLU_RS10680	0.22	-1.9
2,352,724	-		PFLU_RS10680	0.22	+0.6
2,352,724	-		PFLU_RS10680	0.22	+5.1
2,352,724	-		PFLU_RS10680	0.22	-0.5
2,352,724	-		PFLU_RS10680	0.22	+0.1
2,352,724	-		PFLU_RS10680	0.22	-1.0
2,352,724	-		PFLU_RS10680	0.22	+3.1
2,352,724	-		PFLU_RS10680	0.22	+0.6
2,352,724	-		PFLU_RS10680	0.22	+0.8
2,352,724	-		PFLU_RS10680	0.22	-0.2
2,352,858	+		PFLU_RS10680	0.35	-0.3
2,352,858	+		PFLU_RS10680	0.35	-2.5
2,352,859	-		PFLU_RS10680	0.35	+0.3
2,352,859	-		PFLU_RS10680	0.35	-3.3
2,352,859	-		PFLU_RS10680	0.35	-0.2
2,352,859	-		PFLU_RS10680	0.35	-2.4
2,352,863	+		PFLU_RS10680	0.35	-1.6
2,352,863	+		PFLU_RS10680	0.35	+0.8
2,352,863	+		PFLU_RS10680	0.35	+0.1
2,352,863	+		PFLU_RS10680	0.35	+1.1
2,352,864	-		PFLU_RS10680	0.35	+0.4
2,352,866	+		PFLU_RS10680	0.36	-2.3
2,352,867	-		PFLU_RS10680	0.36	+1.6
2,352,867	-		PFLU_RS10680	0.36	+1.2
2,352,959	+		PFLU_RS10680	0.45	+0.4
2,352,967	-		PFLU_RS10680	0.45	+1.5
2,352,967	-		PFLU_RS10680	0.45	-0.5
2,352,970	+		PFLU_RS10680	0.46	+1.2
2,353,008	+		PFLU_RS10680	0.49	-1.9
2,353,008	+		PFLU_RS10680	0.49	+1.0
2,353,008	+		PFLU_RS10680	0.49	-0.8
2,353,008	+		PFLU_RS10680	0.49	-2.5
2,353,009	-		PFLU_RS10680	0.49	-0.2
2,353,009	-		PFLU_RS10680	0.49	+0.0
2,353,009	-		PFLU_RS10680	0.49	+0.7
2,353,036	+		PFLU_RS10680	0.52	+1.7
2,353,037	-		PFLU_RS10680	0.52	-1.3
2,353,046	+		PFLU_RS10680	0.53	-0.0
2,353,046	+		PFLU_RS10680	0.53	-0.7
2,353,046	+		PFLU_RS10680	0.53	-1.4
2,353,046	+		PFLU_RS10680	0.53	-0.9
2,353,047	-		PFLU_RS10680	0.53	-2.0
2,353,047	-		PFLU_RS10680	0.53	-0.2
2,353,047	-		PFLU_RS10680	0.53	+1.3
2,353,047	-		PFLU_RS10680	0.53	+1.0
2,353,047	-		PFLU_RS10680	0.53	-1.6
2,353,047	-		PFLU_RS10680	0.53	-0.6
2,353,047	-		PFLU_RS10680	0.53	-2.3
2,353,055	+		PFLU_RS10680	0.54	+0.1
2,353,056	-		PFLU_RS10680	0.54	-0.7
2,353,056	-		PFLU_RS10680	0.54	-0.7
2,353,056	-		PFLU_RS10680	0.54	+0.6
2,353,109	+		PFLU_RS10680	0.59	+1.9
2,353,109	+		PFLU_RS10680	0.59	-0.5
2,353,110	-		PFLU_RS10680	0.59	+0.6
2,353,110	-		PFLU_RS10680	0.59	+2.8
2,353,147	+		PFLU_RS10680	0.63	+1.4
2,353,147	+		PFLU_RS10680	0.63	-1.1
2,353,147	+		PFLU_RS10680	0.63	+1.2
2,353,147	+		PFLU_RS10680	0.63	-1.7
2,353,147	+		PFLU_RS10680	0.63	-1.8
2,353,147	+		PFLU_RS10680	0.63	-0.3
2,353,148	-		PFLU_RS10680	0.63	-0.9
2,353,148	-		PFLU_RS10680	0.63	-2.8
2,353,148	-		PFLU_RS10680	0.63	-3.0
2,353,148	-		PFLU_RS10680	0.63	+0.4
2,353,148	-		PFLU_RS10680	0.63	+1.0
2,353,148	-		PFLU_RS10680	0.63	+1.3
2,353,148	-		PFLU_RS10680	0.63	+0.4
2,353,295	+		PFLU_RS10680	0.77	+0.7
2,353,295	+		PFLU_RS10680	0.77	-3.2
2,353,295	+		PFLU_RS10680	0.77	-0.9
2,353,295	+		PFLU_RS10680	0.77	+0.1
2,353,295	+		PFLU_RS10680	0.77	+0.7
2,353,295	+		PFLU_RS10680	0.77	-1.5
2,353,296	-		PFLU_RS10680	0.77	-1.7
2,353,296	-		PFLU_RS10680	0.77	-0.9
2,353,296	-		PFLU_RS10680	0.77	+0.8
2,353,296	-		PFLU_RS10680	0.77	+0.7
2,353,296	-		PFLU_RS10680	0.77	-0.0
2,353,296	-		PFLU_RS10680	0.77	+1.1
2,353,296	-		PFLU_RS10680	0.77	+2.3
2,353,388	-		PFLU_RS10680	0.86	+0.2
2,353,388	-		PFLU_RS10680	0.86	+1.7
2,353,388	-		PFLU_RS10680	0.86	+0.3
2,353,416	+		PFLU_RS10680	0.89	+4.6
2,353,417	-		PFLU_RS10680	0.89	+0.1
2,353,417	-		PFLU_RS10680	0.89	+1.2
2,353,458	+				+0.6
2,353,458	+				+3.8
2,353,458	+				-1.6
2,353,458	+				-0.5
2,353,458	+				-2.4
2,353,459	-				-0.9
2,353,459	-				-1.9
2,353,459	-				-2.0
2,353,459	-				+1.4
2,353,466	+				-0.2
2,353,466	+				-0.5
2,353,466	+				+1.4
2,353,467	-				+0.6
2,353,467	-				-0.3
2,353,467	-				+1.1
2,353,488	-				-2.0
2,353,589	+				-1.5
2,353,589	+				-0.1
2,353,590	-				-0.9
2,353,590	-				-0.9
2,353,590	-				-0.6
2,353,730	+				-0.1
2,353,730	+				-2.1
2,353,730	+				-1.0
2,353,740	+				-1.3
2,353,740	+				+0.4
2,353,740	+				+1.3
2,353,740	+				+0.2
2,353,740	+				+0.1
2,353,740	+				+2.0
2,353,741	-				-0.3
2,353,741	-				+2.0
2,353,741	-				-2.1
2,353,741	-				+0.0
2,353,846	+		PFLU_RS10685	0.18	-0.1
2,353,898	+		PFLU_RS10685	0.24	+0.2
2,353,950	+		PFLU_RS10685	0.30	+0.1
2,353,950	+		PFLU_RS10685	0.30	+1.4
2,353,979	+		PFLU_RS10685	0.33	-1.5
2,353,979	+		PFLU_RS10685	0.33	+0.1
2,353,979	+		PFLU_RS10685	0.33	-1.3
2,353,980	-		PFLU_RS10685	0.33	+2.6
2,354,037	+		PFLU_RS10685	0.40	+1.4
2,354,052	+		PFLU_RS10685	0.41	-2.3
2,354,052	+		PFLU_RS10685	0.41	+0.8
2,354,053	-		PFLU_RS10685	0.42	+0.1
2,354,053	-		PFLU_RS10685	0.42	+2.1
2,354,103	+		PFLU_RS10685	0.47	+1.4
2,354,216	+		PFLU_RS10685	0.60	-3.0
2,354,242	+		PFLU_RS10685	0.63	-2.3
2,354,242	+		PFLU_RS10685	0.63	-0.6
2,354,242	+		PFLU_RS10685	0.63	-0.9
2,354,243	-		PFLU_RS10685	0.63	-0.4
2,354,243	-		PFLU_RS10685	0.63	+2.0
2,354,243	-		PFLU_RS10685	0.63	-1.1
2,354,271	+		PFLU_RS10685	0.66	+0.9
2,354,272	-		PFLU_RS10685	0.66	-1.5
2,354,278	+		PFLU_RS10685	0.67	+1.4
2,354,279	-		PFLU_RS10685	0.67	+0.5
2,354,303	+		PFLU_RS10685	0.70	+1.0
2,354,304	-		PFLU_RS10685	0.70	+0.5
2,354,329	+		PFLU_RS10685	0.73	+1.1
2,354,493	+				+3.7
2,354,533	+				-2.2
2,354,533	+				-1.2
2,354,534	-				-0.6
2,354,534	-				-1.9
2,354,585	+				-0.8
2,354,586	-				-1.6
2,354,594	-				-0.3
2,354,594	-				+0.3
2,354,594	-				-2.3
2,354,618	+				+1.0
2,354,620	+				+0.6
2,354,640	-				-1.6
2,354,700	+				+1.0
2,354,701	-				+2.1
2,354,723	-				+1.2
2,354,842	-				-0.9
2,354,855	-				+1.1
2,354,867	-				-0.7
2,354,891	-		PFLU_RS10690	0.11	-2.6
2,354,899	-		PFLU_RS10690	0.11	-2.1
2,354,902	-		PFLU_RS10690	0.11	-1.5
2,355,113	-		PFLU_RS10690	0.22	-2.7
2,355,113	-		PFLU_RS10690	0.22	-0.5
2,355,115	-		PFLU_RS10690	0.22	-2.3
2,355,122	+		PFLU_RS10690	0.22	-2.6
2,355,122	+		PFLU_RS10690	0.22	+0.7
2,355,135	+		PFLU_RS10690	0.23	+0.9
2,355,136	-		PFLU_RS10690	0.23	+1.4
2,355,136	-		PFLU_RS10690	0.23	-0.2
2,355,136	-		PFLU_RS10690	0.23	+0.1
2,355,136	-		PFLU_RS10690	0.23	+0.9
2,355,160	-		PFLU_RS10690	0.24	+0.2
2,355,165	+		PFLU_RS10690	0.25	-1.7
2,355,166	-		PFLU_RS10690	0.25	+1.1
2,355,167	+		PFLU_RS10690	0.25	+0.3
2,355,167	+		PFLU_RS10690	0.25	-1.2
2,355,167	+		PFLU_RS10690	0.25	+0.9
2,355,168	-		PFLU_RS10690	0.25	+0.6
2,355,168	-		PFLU_RS10690	0.25	+2.5
2,355,168	-		PFLU_RS10690	0.25	-1.5
2,355,168	-		PFLU_RS10690	0.25	-0.3
2,355,179	+		PFLU_RS10690	0.25	+0.1
2,355,238	+		PFLU_RS10690	0.28	-0.5
2,355,249	+		PFLU_RS10690	0.29	-3.1
2,355,249	+		PFLU_RS10690	0.29	-0.6
2,355,256	+		PFLU_RS10690	0.29	+2.9
2,355,257	-		PFLU_RS10690	0.29	-0.6
2,355,286	-		PFLU_RS10690	0.31	+0.1
2,355,338	+		PFLU_RS10690	0.34	-1.1
2,355,375	-		PFLU_RS10690	0.35	+0.5
2,355,439	-		PFLU_RS10690	0.39	-0.5
2,355,442	-		PFLU_RS10690	0.39	+0.8
2,355,449	+		PFLU_RS10690	0.39	-1.5
2,355,449	+		PFLU_RS10690	0.39	+0.3
2,355,450	-		PFLU_RS10690	0.39	+0.6
2,355,450	-		PFLU_RS10690	0.39	+1.6
2,355,450	-		PFLU_RS10690	0.39	+1.7
2,355,531	+		PFLU_RS10690	0.43	+1.0
2,355,532	-		PFLU_RS10690	0.43	-0.9