Strain Fitness in Pseudomonas fluorescens SBW25 around PFLU_RS07250

Experiment: acetate (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	acetate (C)
1,616,065	+		PFLU_RS07245	0.39	-2.0
1,616,065	+		PFLU_RS07245	0.39	-0.2
1,616,120	+		PFLU_RS07245	0.42	-2.9
1,616,120	+		PFLU_RS07245	0.42	+0.7
1,616,120	+		PFLU_RS07245	0.42	-0.4
1,616,120	+		PFLU_RS07245	0.42	+0.9
1,616,121	-		PFLU_RS07245	0.42	-1.0
1,616,121	-		PFLU_RS07245	0.42	-1.5
1,616,121	-		PFLU_RS07245	0.42	-2.0
1,616,121	-		PFLU_RS07245	0.42	+0.1
1,616,161	+		PFLU_RS07245	0.45	-2.4
1,616,161	+		PFLU_RS07245	0.45	-0.1
1,616,162	-		PFLU_RS07245	0.45	-2.7
1,616,222	+		PFLU_RS07245	0.49	+0.5
1,616,222	+		PFLU_RS07245	0.49	-2.0
1,616,222	+		PFLU_RS07245	0.49	-0.4
1,616,222	+		PFLU_RS07245	0.49	-2.7
1,616,223	-		PFLU_RS07245	0.50	-2.6
1,616,223	-		PFLU_RS07245	0.50	-1.3
1,616,223	-		PFLU_RS07245	0.50	+0.4
1,616,223	-		PFLU_RS07245	0.50	-1.5
1,616,806	+				-0.6
1,616,807	-				+0.0
1,616,945	+				+0.1
1,616,945	+				+0.4
1,616,946	-				-1.8
1,616,946	-				+1.4
1,617,014	+				+0.3
1,617,015	-				-1.2
1,617,167	+		PFLU_RS07250	0.11	-2.6
1,617,168	-		PFLU_RS07250	0.11	-1.4
1,617,168	-		PFLU_RS07250	0.11	-1.5
1,617,347	+		PFLU_RS07250	0.23	+1.0
1,617,348	-		PFLU_RS07250	0.23	-1.7
1,617,348	-		PFLU_RS07250	0.23	+0.2
1,617,443	+		PFLU_RS07250	0.30	+0.4
1,617,443	+		PFLU_RS07250	0.30	-3.7
1,617,443	+		PFLU_RS07250	0.30	-0.5
1,617,443	+		PFLU_RS07250	0.30	-2.7
1,617,443	+		PFLU_RS07250	0.30	-2.0
1,617,443	+		PFLU_RS07250	0.30	-2.0
1,617,443	+		PFLU_RS07250	0.30	-0.3
1,617,443	+		PFLU_RS07250	0.30	+1.5
1,617,443	+		PFLU_RS07250	0.30	-2.0
1,617,443	+		PFLU_RS07250	0.30	-2.4
1,617,443	+		PFLU_RS07250	0.30	+2.4
1,617,444	-		PFLU_RS07250	0.30	-0.5
1,617,444	-		PFLU_RS07250	0.30	-2.3
1,617,444	-		PFLU_RS07250	0.30	+2.2
1,617,444	-		PFLU_RS07250	0.30	-2.0
1,617,444	-		PFLU_RS07250	0.30	+4.2
1,617,444	-		PFLU_RS07250	0.30	-1.2
1,617,444	-		PFLU_RS07250	0.30	-0.0
1,617,444	-		PFLU_RS07250	0.30	+0.2
1,617,444	-		PFLU_RS07250	0.30	-1.9
1,617,444	-		PFLU_RS07250	0.30	-2.6
1,617,444	-		PFLU_RS07250	0.30	+0.4
1,617,444	-		PFLU_RS07250	0.30	-1.7
1,617,444	-		PFLU_RS07250	0.30	-0.3
1,617,444	-		PFLU_RS07250	0.30	-3.7
1,617,529	-		PFLU_RS07250	0.36	+0.8
1,617,617	+		PFLU_RS07250	0.42	-1.0
1,617,617	+		PFLU_RS07250	0.42	-0.6
1,617,650	+		PFLU_RS07250	0.44	-1.6
1,618,085	+		PFLU_RS07250	0.75	-1.0
1,618,085	+		PFLU_RS07250	0.75	+0.4
1,618,085	+		PFLU_RS07250	0.75	-1.3
1,618,086	-		PFLU_RS07250	0.75	-1.0
1,618,086	-		PFLU_RS07250	0.75	-1.3
1,618,232	+		PFLU_RS07250	0.85	+0.6
1,618,232	+		PFLU_RS07250	0.85	+0.7
1,618,233	-		PFLU_RS07250	0.85	+3.4
1,618,233	-		PFLU_RS07250	0.85	-2.1
1,618,233	-		PFLU_RS07250	0.85	-1.2
1,618,250	+		PFLU_RS07250	0.86	-3.1
1,618,250	+		PFLU_RS07250	0.86	+0.6
1,618,250	+		PFLU_RS07250	0.86	-0.8
1,618,250	+		PFLU_RS07250	0.86	+0.4
1,618,250	+		PFLU_RS07250	0.86	-3.2
1,618,250	+		PFLU_RS07250	0.86	+1.0
1,618,251	-		PFLU_RS07250	0.86	-2.0
1,618,251	-		PFLU_RS07250	0.86	+1.2
1,618,251	-		PFLU_RS07250	0.86	-0.5
1,618,251	-		PFLU_RS07250	0.86	+0.4
1,618,251	-		PFLU_RS07250	0.86	+1.0
1,618,299	-		PFLU_RS07250	0.90	-1.5
1,618,299	-		PFLU_RS07250	0.90	-1.4
1,618,299	-		PFLU_RS07250	0.90	-2.0
1,618,325	+				-2.4
1,618,325	+				-1.7
1,618,326	-				-1.7
1,618,376	-				-3.7
1,618,376	-				-1.5
1,618,376	-				+0.6
1,618,429	-				-1.3
1,618,472	+				+1.6
1,618,472	+				-1.8
1,618,472	+				+0.1
1,618,472	+				+0.8
1,618,472	+				-0.9
1,618,472	+				+0.4
1,618,472	+				+0.1
1,618,473	-				-1.6
1,618,473	-				-1.4
1,618,473	-				-1.1
1,618,473	-				-0.6
1,618,473	-				-1.0
1,618,473	-				-2.1
1,618,473	-				-0.2
1,618,478	-				-0.6
1,618,504	+				+1.9
1,618,505	-				+1.5
1,618,505	-				-0.4
1,618,505	-				+0.4
1,618,505	-				-0.8
1,618,509	+				+0.8
1,618,509	+				+1.1
1,618,509	+				-0.2
1,618,509	+				-0.7
1,618,509	+				+1.4
1,618,509	+				-0.6
1,618,509	+				+3.2
1,618,509	+				-2.9
1,618,509	+				+1.1
1,618,510	-				-1.9
1,618,510	-				-0.0
1,618,510	-				+1.7
1,618,510	-				+1.7
1,618,510	-				-0.5
1,618,510	-				+0.4
1,618,510	-				+1.6
1,618,535	+				+0.5
1,618,555	+				+1.0
1,618,556	-				-0.3
1,618,556	-				-0.2
1,618,556	-				-1.0
1,618,655	+		PFLU_RS07255	0.47	-1.6
1,618,655	+		PFLU_RS07255	0.47	+1.4
1,618,655	+		PFLU_RS07255	0.47	-1.7
1,618,655	+		PFLU_RS07255	0.47	-0.3
1,618,656	-		PFLU_RS07255	0.47	-2.4
1,618,656	-		PFLU_RS07255	0.47	-2.7
1,618,656	-		PFLU_RS07255	0.47	-1.9
1,618,656	-		PFLU_RS07255	0.47	+0.4
1,618,656	-		PFLU_RS07255	0.47	-3.0
1,618,755	+		PFLU_RS07255	0.89	-0.5
1,618,756	-		PFLU_RS07255	0.89	-2.4
1,618,827	-				-2.0
1,618,846	+				+2.1
1,618,846	+				-1.1
1,618,847	-				-1.5
1,618,960	+		PFLU_RS07260	0.14	-0.9
1,618,960	+		PFLU_RS07260	0.14	+2.2
1,618,961	-		PFLU_RS07260	0.14	+2.5
1,619,064	+		PFLU_RS07260	0.23	-0.5
1,619,064	+		PFLU_RS07260	0.23	+0.8
1,619,075	+		PFLU_RS07260	0.24	+1.3
1,619,087	+		PFLU_RS07260	0.26	-2.2
1,619,305	+		PFLU_RS07260	0.46	-2.1
1,619,306	-		PFLU_RS07260	0.46	-0.2
1,619,306	-		PFLU_RS07260	0.46	+3.0
1,619,380	+		PFLU_RS07260	0.53	-1.3
1,619,380	+		PFLU_RS07260	0.53	+1.1
1,619,380	+		PFLU_RS07260	0.53	+2.1
1,619,380	+		PFLU_RS07260	0.53	-0.6
1,619,380	+		PFLU_RS07260	0.53	-2.2
1,619,381	-		PFLU_RS07260	0.53	-1.4
1,619,446	+		PFLU_RS07260	0.59	+0.4
1,619,446	+		PFLU_RS07260	0.59	+1.7
1,619,446	+		PFLU_RS07260	0.59	+0.2
1,619,446	+		PFLU_RS07260	0.59	-3.4
1,619,446	+		PFLU_RS07260	0.59	-2.6
1,619,446	+		PFLU_RS07260	0.59	+1.0
1,619,446	+		PFLU_RS07260	0.59	+0.1
1,619,446	+		PFLU_RS07260	0.59	+0.3
1,619,446	+		PFLU_RS07260	0.59	+0.5
1,619,446	+		PFLU_RS07260	0.59	-1.3
1,619,446	+		PFLU_RS07260	0.59	-2.9