Strain Fitness in Pseudomonas fluorescens SBW25 around PFLU_RS06485

Experiment: acetate (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	acetate (C)
1,448,867	+				-0.5
1,448,867	+				+0.0
1,448,867	+				+0.5
1,448,867	+				-2.0
1,448,868	-				-2.8
1,448,868	-				-0.4
1,448,868	-				+0.2
1,448,880	-				+1.3
1,448,914	-				+0.0
1,448,921	+				+0.0
1,448,922	-				+1.7
1,448,922	-				-2.3
1,448,939	-				-1.5
1,448,949	+		PFLU_RS06480	0.11	+0.0
1,448,950	-		PFLU_RS06480	0.11	-0.3
1,448,950	-		PFLU_RS06480	0.11	-0.4
1,448,982	+		PFLU_RS06480	0.15	-3.3
1,449,051	-		PFLU_RS06480	0.24	+0.5
1,449,143	+		PFLU_RS06480	0.36	-1.0
1,449,143	+		PFLU_RS06480	0.36	+0.9
1,449,143	+		PFLU_RS06480	0.36	-2.6
1,449,143	+		PFLU_RS06480	0.36	+2.0
1,449,143	+		PFLU_RS06480	0.36	-0.5
1,449,144	-		PFLU_RS06480	0.36	+0.5
1,449,144	-		PFLU_RS06480	0.36	+0.9
1,449,144	-		PFLU_RS06480	0.36	+0.5
1,449,144	-		PFLU_RS06480	0.36	-2.0
1,449,144	-		PFLU_RS06480	0.36	+1.3
1,449,144	-		PFLU_RS06480	0.36	-0.3
1,449,144	-		PFLU_RS06480	0.36	-2.9
1,449,144	-		PFLU_RS06480	0.36	+1.2
1,449,165	-		PFLU_RS06480	0.38	-0.3
1,449,209	+		PFLU_RS06480	0.44	+1.5
1,449,210	-		PFLU_RS06480	0.44	-0.9
1,449,210	-		PFLU_RS06480	0.44	-0.7
1,449,499	+		PFLU_RS06480	0.81	+1.3
1,449,500	-		PFLU_RS06480	0.81	+1.2
1,449,540	-		PFLU_RS06480	0.86	+0.7
1,449,572	+				+0.1
1,449,572	+				+2.0
1,449,573	-				-1.8
1,449,646	+				+2.5
1,449,646	+				-1.3
1,449,646	+				-0.4
1,449,646	+				+0.2
1,449,647	-				+1.8
1,449,650	+				+1.6
1,449,650	+				+1.0
1,449,650	+				-3.6
1,449,650	+				-0.6
1,449,650	+				+2.1
1,449,650	+				-2.0
1,449,650	+				-1.5
1,449,650	+				-1.7
1,449,650	+				+0.7
1,449,650	+				+2.0
1,449,651	-				+1.0
1,449,651	-				+0.9
1,449,651	-				+0.9
1,449,651	-				+2.8
1,449,651	-				-0.7
1,449,651	-				+3.2
1,449,669	+				+1.0
1,449,669	+				+0.2
1,449,670	-				+2.1
1,449,670	-				-0.6
1,449,670	-				+3.3
1,449,670	-				-2.3
1,449,670	-				-0.1
1,449,670	-				-2.1
1,449,688	+				-0.4
1,449,689	-				+0.6
1,449,689	-				+0.3
1,449,725	+				-1.9
1,449,742	+				-0.8
1,449,742	+				+0.5
1,449,742	+				-0.2
1,449,742	+				+0.3
1,449,742	+				-0.0
1,449,742	+				+1.3
1,449,742	+				-2.6
1,449,742	+				+0.7
1,449,742	+				-1.3
1,449,742	+				-3.7
1,449,742	+				+1.7
1,449,742	+				+0.9
1,449,742	+				+1.6
1,449,743	-				-0.3
1,449,743	-				-1.8
1,449,743	-				-1.5
1,449,743	-				+1.6
1,449,743	-				+0.9
1,449,743	-				+1.6
1,449,743	-				+2.3
1,449,743	-				+0.7
1,449,743	-				-1.4
1,449,743	-				+0.9
1,449,754	+				+0.7
1,449,754	+				+0.8
1,449,754	+				+1.5
1,449,754	+				-0.2
1,449,754	+				-2.8
1,449,755	-				-2.5
1,449,755	-				+0.5
1,449,755	-				+0.6
1,449,755	-				-1.4
1,449,755	-				+0.6
1,449,773	+				+1.9
1,449,802	+				+1.0
1,449,803	-				+2.8
1,449,846	+				+1.9
1,449,846	+				+1.2
1,449,846	+				+0.0
1,449,846	+				+1.2
1,449,846	+				+1.5
1,449,846	+				+1.0
1,449,846	+				+1.9
1,449,846	+				+0.4
1,449,846	+				+1.3
1,449,847	-				-0.1
1,449,847	-				+0.3
1,449,847	-				+1.1
1,449,847	-				+1.5
1,449,847	-				+1.2
1,449,847	-				+0.1
1,449,847	-				-0.0
1,449,847	-				-1.2
1,449,920	-				+1.6
1,449,920	-				+0.8
1,449,920	-				+2.9
1,449,970	+				+1.2
1,449,970	+				-0.5
1,449,970	+				-0.8
1,449,970	+				+0.8
1,449,970	+				+1.2
1,449,970	+				+0.3
1,449,971	-				+0.2
1,449,971	-				+2.0
1,449,971	-				+1.3
1,449,971	-				+3.4
1,450,116	+		PFLU_RS06485	0.15	+1.7
1,450,117	-		PFLU_RS06485	0.15	+2.6
1,450,117	-		PFLU_RS06485	0.15	+1.9
1,450,141	+		PFLU_RS06485	0.17	+0.5
1,450,141	+		PFLU_RS06485	0.17	-0.8
1,450,141	+		PFLU_RS06485	0.17	+1.9
1,450,141	+		PFLU_RS06485	0.17	+1.4
1,450,141	+		PFLU_RS06485	0.17	+1.6
1,450,142	-		PFLU_RS06485	0.17	-1.5
1,450,142	-		PFLU_RS06485	0.17	+1.8
1,450,142	-		PFLU_RS06485	0.17	-0.1
1,450,142	-		PFLU_RS06485	0.17	+0.6
1,450,142	-		PFLU_RS06485	0.17	+2.4
1,450,142	-		PFLU_RS06485	0.17	-2.0
1,450,183	-		PFLU_RS06485	0.19	+0.8
1,450,183	-		PFLU_RS06485	0.19	+1.0
1,450,183	-		PFLU_RS06485	0.19	-2.6
1,450,183	-		PFLU_RS06485	0.19	+2.9
1,450,183	-		PFLU_RS06485	0.19	+2.0
1,450,192	-		PFLU_RS06485	0.20	+2.6
1,450,192	-		PFLU_RS06485	0.20	-0.5
1,450,227	+		PFLU_RS06485	0.22	+1.3
1,450,227	+		PFLU_RS06485	0.22	+1.7
1,450,227	+		PFLU_RS06485	0.22	+0.6
1,450,228	-		PFLU_RS06485	0.22	+2.7
1,450,228	-		PFLU_RS06485	0.22	-0.5
1,450,228	-		PFLU_RS06485	0.22	+1.5
1,450,228	-		PFLU_RS06485	0.22	+1.7
1,450,308	+		PFLU_RS06485	0.27	+0.0
1,450,308	+		PFLU_RS06485	0.27	+0.7
1,450,308	+		PFLU_RS06485	0.27	-1.7
1,450,308	+		PFLU_RS06485	0.27	-0.2
1,450,309	-		PFLU_RS06485	0.27	-1.7
1,450,309	-		PFLU_RS06485	0.27	-0.3
1,450,424	+		PFLU_RS06485	0.34	-2.8
1,450,424	+		PFLU_RS06485	0.34	+1.8
1,450,425	-		PFLU_RS06485	0.34	+0.8
1,450,425	-		PFLU_RS06485	0.34	-2.7
1,450,525	-		PFLU_RS06485	0.40	+0.7
1,450,557	-		PFLU_RS06485	0.42	+0.1
1,450,557	-		PFLU_RS06485	0.42	+0.9
1,450,557	-		PFLU_RS06485	0.42	+2.0
1,450,932	+		PFLU_RS06485	0.65	-0.0
1,450,932	+		PFLU_RS06485	0.65	-0.6
1,450,932	+		PFLU_RS06485	0.65	-1.5
1,450,932	+		PFLU_RS06485	0.65	-2.4
1,450,933	-		PFLU_RS06485	0.65	+0.4
1,450,945	+		PFLU_RS06485	0.66	+0.7
1,450,946	-		PFLU_RS06485	0.66	+0.5
1,451,217	+		PFLU_RS06485	0.83	+1.2
1,451,217	+		PFLU_RS06485	0.83	+0.3
1,451,217	+		PFLU_RS06485	0.83	+0.3
1,451,217	+		PFLU_RS06485	0.83	+1.2
1,451,217	+		PFLU_RS06485	0.83	-0.1
1,451,218	-		PFLU_RS06485	0.83	-1.4
1,451,274	+		PFLU_RS06485	0.86	+0.0
1,451,274	+		PFLU_RS06485	0.86	-1.4
1,451,275	-		PFLU_RS06485	0.86	-1.2
1,451,275	-		PFLU_RS06485	0.86	-1.3
1,451,275	-		PFLU_RS06485	0.86	-1.5
1,451,275	-		PFLU_RS06485	0.86	-0.1
1,451,275	-		PFLU_RS06485	0.86	-0.3
1,451,380	-				+1.0
1,451,380	-				-2.5
1,451,421	+				+0.7
1,451,421	+				+0.5
1,451,478	+				-0.2
1,451,478	+				-2.3
1,451,479	-				+1.9
1,451,479	-				+0.7
1,451,528	+				+0.8
1,451,584	+				+0.9
1,451,821	+		PFLU_RS06490	0.32	-1.1
1,451,856	-		PFLU_RS06490	0.36	+0.3
1,451,873	+		PFLU_RS06490	0.37	-0.8
1,451,873	+		PFLU_RS06490	0.37	-0.4
1,451,873	+		PFLU_RS06490	0.37	+0.9
1,451,873	+		PFLU_RS06490	0.37	-2.9
1,451,873	+		PFLU_RS06490	0.37	-3.5
1,451,873	+		PFLU_RS06490	0.37	+0.0
1,451,873	+		PFLU_RS06490	0.37	-0.1
1,451,873	+		PFLU_RS06490	0.37	+0.5
1,451,873	+		PFLU_RS06490	0.37	-2.4
1,451,873	+		PFLU_RS06490	0.37	+0.4
1,451,873	+		PFLU_RS06490	0.37	+1.0
1,451,873	+		PFLU_RS06490	0.37	+0.5
1,451,873	+		PFLU_RS06490	0.37	+0.6
1,451,873	+		PFLU_RS06490	0.37	-0.9
1,451,873	+		PFLU_RS06490	0.37	-2.4
1,451,873	+		PFLU_RS06490	0.37	-1.2
1,451,873	+		PFLU_RS06490	0.37	+2.8
1,451,873	+		PFLU_RS06490	0.37	-0.9
1,451,873	+		PFLU_RS06490	0.37	-1.2
1,451,873	+		PFLU_RS06490	0.37	+0.9
1,451,874	-		PFLU_RS06490	0.38	+1.9
1,451,874	-		PFLU_RS06490	0.38	+1.2
1,451,874	-		PFLU_RS06490	0.38	-2.7
1,451,874	-		PFLU_RS06490	0.38	+1.4
1,451,874	-		PFLU_RS06490	0.38	-1.1
1,451,874	-		PFLU_RS06490	0.38	+0.0
1,451,874	-		PFLU_RS06490	0.38	+0.7
1,451,874	-		PFLU_RS06490	0.38	+1.6
1,451,874	-		PFLU_RS06490	0.38	-2.0
1,451,874	-		PFLU_RS06490	0.38	+2.0
1,451,874	-		PFLU_RS06490	0.38	-1.7
1,451,874	-		PFLU_RS06490	0.38	-0.3
1,451,874	-		PFLU_RS06490	0.38	-2.5
1,451,874	-		PFLU_RS06490	0.38	+2.0
1,451,874	-		PFLU_RS06490	0.38	+1.3
1,451,874	-		PFLU_RS06490	0.38	+0.0
1,451,874	-		PFLU_RS06490	0.38	+0.6
1,451,874	-		PFLU_RS06490	0.38	+0.2
1,451,874	-		PFLU_RS06490	0.38	+0.7
1,451,892	-		PFLU_RS06490	0.39	+0.7
1,451,952	+		PFLU_RS06490	0.45	-0.8
1,451,953	-		PFLU_RS06490	0.45	-1.3
1,451,988	-		PFLU_RS06490	0.49	-0.5
1,451,988	-		PFLU_RS06490	0.49	-2.0
1,451,988	-		PFLU_RS06490	0.49	-0.7
1,452,080	+		PFLU_RS06490	0.58	+0.9
1,452,080	+		PFLU_RS06490	0.58	+1.5
1,452,080	+		PFLU_RS06490	0.58	-1.4
1,452,080	+		PFLU_RS06490	0.58	-0.5
1,452,080	+		PFLU_RS06490	0.58	-1.3
1,452,081	-		PFLU_RS06490	0.58	+0.5
1,452,081	-		PFLU_RS06490	0.58	-1.4
1,452,112	-		PFLU_RS06490	0.61	-1.5
1,452,151	-		PFLU_RS06490	0.65	+2.2
1,452,170	+		PFLU_RS06490	0.67	+0.5
1,452,170	+		PFLU_RS06490	0.67	+2.5
1,452,170	+		PFLU_RS06490	0.67	+0.5
1,452,171	-		PFLU_RS06490	0.67	+0.4
1,452,204	-		PFLU_RS06490	0.70	+0.5
1,452,256	+		PFLU_RS06490	0.76	+1.4
1,452,256	+		PFLU_RS06490	0.76	-1.6
1,452,257	-		PFLU_RS06490	0.76	-0.0
1,452,257	-		PFLU_RS06490	0.76	-2.7
1,452,274	+		PFLU_RS06490	0.77	+3.2
1,452,274	+		PFLU_RS06490	0.77	+0.2
1,452,274	+		PFLU_RS06490	0.77	-0.9
1,452,274	+		PFLU_RS06490	0.77	+1.2
1,452,275	-		PFLU_RS06490	0.77	-3.2
1,452,275	-		PFLU_RS06490	0.77	-0.2
1,452,275	-		PFLU_RS06490	0.77	-1.7
1,452,275	-		PFLU_RS06490	0.77	-0.0
1,452,275	-		PFLU_RS06490	0.77	+1.6
1,452,275	-		PFLU_RS06490	0.77	+0.9
1,452,290	+		PFLU_RS06490	0.79	-1.3
1,452,365	+		PFLU_RS06490	0.86	+0.4
1,452,365	+		PFLU_RS06490	0.86	-0.5
1,452,366	-		PFLU_RS06490	0.86	-0.1
1,452,366	-		PFLU_RS06490	0.86	-1.9
1,452,366	-		PFLU_RS06490	0.86	-2.1
1,452,366	-		PFLU_RS06490	0.86	-2.4
1,452,446	+				+0.6
1,452,447	-				+0.3
1,452,447	-				+0.9
1,452,447	-				+0.5
1,452,447	-				-0.5