Strain Fitness in Pseudomonas fluorescens SBW25 around PFLU_RS06480

Experiment: acetate (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	acetate (C)
1,447,867	+		PFLU_RS06470	0.69	+1.4
1,447,867	+		PFLU_RS06470	0.69	-0.1
1,447,869	+		PFLU_RS06470	0.70	+1.1
1,447,869	+		PFLU_RS06470	0.70	+0.1
1,447,869	+		PFLU_RS06470	0.70	+1.3
1,447,869	+		PFLU_RS06470	0.70	-0.2
1,447,869	+		PFLU_RS06470	0.70	+1.7
1,447,869	+		PFLU_RS06470	0.70	-0.1
1,447,869	+		PFLU_RS06470	0.70	+0.3
1,447,869	+		PFLU_RS06470	0.70	-2.4
1,447,869	+		PFLU_RS06470	0.70	-0.5
1,447,869	+		PFLU_RS06470	0.70	-0.4
1,447,870	-		PFLU_RS06470	0.70	+1.1
1,447,870	-		PFLU_RS06470	0.70	+1.0
1,447,870	-		PFLU_RS06470	0.70	-0.8
1,447,870	-		PFLU_RS06470	0.70	+1.5
1,447,870	-		PFLU_RS06470	0.70	+2.2
1,447,870	-		PFLU_RS06470	0.70	+0.6
1,447,870	-		PFLU_RS06470	0.70	-0.4
1,447,870	-		PFLU_RS06470	0.70	+1.0
1,447,870	-		PFLU_RS06470	0.70	+1.6
1,447,870	-		PFLU_RS06470	0.70	+0.6
1,447,870	-		PFLU_RS06470	0.70	-1.0
1,447,893	+		PFLU_RS06470	0.73	+1.0
1,447,893	+		PFLU_RS06470	0.73	-1.0
1,447,893	+		PFLU_RS06470	0.73	+1.3
1,447,893	+		PFLU_RS06470	0.73	-3.0
1,447,893	+		PFLU_RS06470	0.73	-1.9
1,447,893	+		PFLU_RS06470	0.73	-0.0
1,447,893	+		PFLU_RS06470	0.73	+0.0
1,447,893	+		PFLU_RS06470	0.73	+1.0
1,447,894	-		PFLU_RS06470	0.73	+0.9
1,447,894	-		PFLU_RS06470	0.73	-1.6
1,447,899	+		PFLU_RS06470	0.74	-1.9
1,447,899	+		PFLU_RS06470	0.74	-0.5
1,447,899	+		PFLU_RS06470	0.74	-2.6
1,447,899	+		PFLU_RS06470	0.74	+0.8
1,447,899	+		PFLU_RS06470	0.74	+1.6
1,447,899	+		PFLU_RS06470	0.74	-1.8
1,447,900	-		PFLU_RS06470	0.74	+0.5
1,447,900	-		PFLU_RS06470	0.74	+1.0
1,447,900	-		PFLU_RS06470	0.74	+1.3
1,447,900	-		PFLU_RS06470	0.74	+0.2
1,447,900	-		PFLU_RS06470	0.74	-0.3
1,447,900	-		PFLU_RS06470	0.74	-2.0
1,447,919	+		PFLU_RS06470	0.77	-1.7
1,447,919	+		PFLU_RS06470	0.77	+0.5
1,447,919	+		PFLU_RS06470	0.77	+0.3
1,447,920	-		PFLU_RS06470	0.77	+0.4
1,448,041	+				+0.3
1,448,043	+				-2.5
1,448,043	+				-1.1
1,448,061	+				-1.5
1,448,061	+				+1.0
1,448,111	+				+0.7
1,448,111	+				+2.1
1,448,165	+		PFLU_RS06475	0.12	+0.3
1,448,165	+		PFLU_RS06475	0.12	-1.5
1,448,165	+		PFLU_RS06475	0.12	-2.1
1,448,165	+		PFLU_RS06475	0.12	+4.3
1,448,165	+		PFLU_RS06475	0.12	+3.3
1,448,165	+		PFLU_RS06475	0.12	+0.5
1,448,165	+		PFLU_RS06475	0.12	-0.3
1,448,166	-		PFLU_RS06475	0.12	+0.9
1,448,166	-		PFLU_RS06475	0.12	-0.6
1,448,166	-		PFLU_RS06475	0.12	-2.6
1,448,166	-		PFLU_RS06475	0.12	+1.3
1,448,166	-		PFLU_RS06475	0.12	-0.3
1,448,192	+		PFLU_RS06475	0.15	+0.8
1,448,192	+		PFLU_RS06475	0.15	-1.5
1,448,193	-		PFLU_RS06475	0.16	-1.0
1,448,193	-		PFLU_RS06475	0.16	-1.0
1,448,193	-		PFLU_RS06475	0.16	-0.1
1,448,193	-		PFLU_RS06475	0.16	-1.7
1,448,204	+		PFLU_RS06475	0.17	+3.2
1,448,204	+		PFLU_RS06475	0.17	-1.0
1,448,204	+		PFLU_RS06475	0.17	-0.0
1,448,204	+		PFLU_RS06475	0.17	+0.0
1,448,205	-		PFLU_RS06475	0.17	+0.5
1,448,205	-		PFLU_RS06475	0.17	-1.4
1,448,205	-		PFLU_RS06475	0.17	+0.6
1,448,205	-		PFLU_RS06475	0.17	+0.2
1,448,205	-		PFLU_RS06475	0.17	-0.6
1,448,205	-		PFLU_RS06475	0.17	+1.3
1,448,299	-		PFLU_RS06475	0.30	-1.0
1,448,349	-		PFLU_RS06475	0.37	+0.6
1,448,447	+		PFLU_RS06475	0.50	+0.8
1,448,447	+		PFLU_RS06475	0.50	+2.0
1,448,447	+		PFLU_RS06475	0.50	-0.7
1,448,447	+		PFLU_RS06475	0.50	+1.8
1,448,448	-		PFLU_RS06475	0.50	-0.9
1,448,448	-		PFLU_RS06475	0.50	-0.3
1,448,448	-		PFLU_RS06475	0.50	-0.3
1,448,448	-		PFLU_RS06475	0.50	+2.6
1,448,456	+		PFLU_RS06475	0.52	-2.0
1,448,456	+		PFLU_RS06475	0.52	+0.3
1,448,456	+		PFLU_RS06475	0.52	+0.8
1,448,456	+		PFLU_RS06475	0.52	+1.7
1,448,457	-		PFLU_RS06475	0.52	-2.0
1,448,457	-		PFLU_RS06475	0.52	+0.8
1,448,457	-		PFLU_RS06475	0.52	-1.4
1,448,457	-		PFLU_RS06475	0.52	+1.1
1,448,460	+		PFLU_RS06475	0.52	+1.0
1,448,460	+		PFLU_RS06475	0.52	-0.9
1,448,460	+		PFLU_RS06475	0.52	-0.3
1,448,461	-		PFLU_RS06475	0.52	-2.2
1,448,461	-		PFLU_RS06475	0.52	+1.4
1,448,507	+		PFLU_RS06475	0.59	+3.3
1,448,507	+		PFLU_RS06475	0.59	+1.2
1,448,507	+		PFLU_RS06475	0.59	+2.2
1,448,507	+		PFLU_RS06475	0.59	+0.6
1,448,507	+		PFLU_RS06475	0.59	+1.3
1,448,507	+		PFLU_RS06475	0.59	+0.8
1,448,508	-		PFLU_RS06475	0.59	+1.1
1,448,508	-		PFLU_RS06475	0.59	-3.2
1,448,508	-		PFLU_RS06475	0.59	+1.8
1,448,557	-		PFLU_RS06475	0.65	-1.0
1,448,557	-		PFLU_RS06475	0.65	-2.0
1,448,558	+		PFLU_RS06475	0.66	-0.7
1,448,559	-		PFLU_RS06475	0.66	-0.3
1,448,559	-		PFLU_RS06475	0.66	+1.9
1,448,612	+		PFLU_RS06475	0.73	-2.7
1,448,612	+		PFLU_RS06475	0.73	+0.1
1,448,612	+		PFLU_RS06475	0.73	+0.1
1,448,612	+		PFLU_RS06475	0.73	-0.2
1,448,612	+		PFLU_RS06475	0.73	-0.9
1,448,613	-		PFLU_RS06475	0.73	+1.1
1,448,613	-		PFLU_RS06475	0.73	-2.3
1,448,613	-		PFLU_RS06475	0.73	+0.2
1,448,718	+		PFLU_RS06475	0.88	+0.5
1,448,718	+		PFLU_RS06475	0.88	+1.2
1,448,718	+		PFLU_RS06475	0.88	-0.5
1,448,719	-		PFLU_RS06475	0.88	-1.9
1,448,719	-		PFLU_RS06475	0.88	-1.8
1,448,719	-		PFLU_RS06475	0.88	-2.5
1,448,808	+				-0.6
1,448,808	+				-3.8
1,448,808	+				-0.9
1,448,808	+				+2.0
1,448,808	+				-1.0
1,448,808	+				+1.0
1,448,808	+				-2.0
1,448,809	-				+0.0
1,448,809	-				+1.0
1,448,809	-				+1.5
1,448,809	-				+1.0
1,448,809	-				-0.8
1,448,809	-				-2.0
1,448,809	-				-2.7
1,448,809	-				-1.1
1,448,820	+				-2.1
1,448,820	+				-2.0
1,448,820	+				+0.1
1,448,820	+				-0.1
1,448,821	-				+1.7
1,448,821	-				+1.0
1,448,821	-				+0.7
1,448,821	-				-2.1
1,448,821	-				-0.2
1,448,821	-				-1.1
1,448,821	-				-0.2
1,448,821	-				-1.1
1,448,867	+				-0.5
1,448,867	+				+0.0
1,448,867	+				+0.5
1,448,867	+				-2.0
1,448,868	-				-2.8
1,448,868	-				-0.4
1,448,868	-				+0.2
1,448,880	-				+1.3
1,448,914	-				+0.0
1,448,921	+				+0.0
1,448,922	-				+1.7
1,448,922	-				-2.3
1,448,939	-				-1.5
1,448,949	+		PFLU_RS06480	0.11	+0.0
1,448,950	-		PFLU_RS06480	0.11	-0.3
1,448,950	-		PFLU_RS06480	0.11	-0.4
1,448,982	+		PFLU_RS06480	0.15	-3.3
1,449,051	-		PFLU_RS06480	0.24	+0.5
1,449,143	+		PFLU_RS06480	0.36	-1.0
1,449,143	+		PFLU_RS06480	0.36	+0.9
1,449,143	+		PFLU_RS06480	0.36	-2.6
1,449,143	+		PFLU_RS06480	0.36	+2.0
1,449,143	+		PFLU_RS06480	0.36	-0.5
1,449,144	-		PFLU_RS06480	0.36	+0.5
1,449,144	-		PFLU_RS06480	0.36	+0.9
1,449,144	-		PFLU_RS06480	0.36	+0.5
1,449,144	-		PFLU_RS06480	0.36	-2.0
1,449,144	-		PFLU_RS06480	0.36	+1.3
1,449,144	-		PFLU_RS06480	0.36	-0.3
1,449,144	-		PFLU_RS06480	0.36	-2.9
1,449,144	-		PFLU_RS06480	0.36	+1.2
1,449,165	-		PFLU_RS06480	0.38	-0.3
1,449,209	+		PFLU_RS06480	0.44	+1.5
1,449,210	-		PFLU_RS06480	0.44	-0.9
1,449,210	-		PFLU_RS06480	0.44	-0.7
1,449,499	+		PFLU_RS06480	0.81	+1.3
1,449,500	-		PFLU_RS06480	0.81	+1.2
1,449,540	-		PFLU_RS06480	0.86	+0.7
1,449,572	+				+0.1
1,449,572	+				+2.0
1,449,573	-				-1.8
1,449,646	+				+2.5
1,449,646	+				-1.3
1,449,646	+				-0.4
1,449,646	+				+0.2
1,449,647	-				+1.8
1,449,650	+				+1.6
1,449,650	+				+1.0
1,449,650	+				-3.6
1,449,650	+				-0.6
1,449,650	+				+2.1
1,449,650	+				-2.0
1,449,650	+				-1.5
1,449,650	+				-1.7
1,449,650	+				+0.7
1,449,650	+				+2.0
1,449,651	-				+1.0
1,449,651	-				+0.9
1,449,651	-				+0.9
1,449,651	-				+2.8
1,449,651	-				-0.7
1,449,651	-				+3.2
1,449,669	+				+1.0
1,449,669	+				+0.2
1,449,670	-				+2.1
1,449,670	-				-0.6
1,449,670	-				+3.3
1,449,670	-				-2.3
1,449,670	-				-0.1
1,449,670	-				-2.1
1,449,688	+				-0.4
1,449,689	-				+0.6
1,449,689	-				+0.3
1,449,725	+				-1.9
1,449,742	+				-0.8
1,449,742	+				+0.5
1,449,742	+				-0.2
1,449,742	+				+0.3
1,449,742	+				-0.0
1,449,742	+				+1.3
1,449,742	+				-2.6
1,449,742	+				+0.7
1,449,742	+				-1.3
1,449,742	+				-3.7
1,449,742	+				+1.7
1,449,742	+				+0.9
1,449,742	+				+1.6
1,449,743	-				-0.3
1,449,743	-				-1.8
1,449,743	-				-1.5
1,449,743	-				+1.6
1,449,743	-				+0.9
1,449,743	-				+1.6
1,449,743	-				+2.3
1,449,743	-				+0.7
1,449,743	-				-1.4
1,449,743	-				+0.9
1,449,754	+				+0.7
1,449,754	+				+0.8
1,449,754	+				+1.5
1,449,754	+				-0.2
1,449,754	+				-2.8
1,449,755	-				-2.5
1,449,755	-				+0.5
1,449,755	-				+0.6
1,449,755	-				-1.4
1,449,755	-				+0.6
1,449,773	+				+1.9
1,449,802	+				+1.0
1,449,803	-				+2.8
1,449,846	+				+1.9
1,449,846	+				+1.2
1,449,846	+				+0.0
1,449,846	+				+1.2
1,449,846	+				+1.5
1,449,846	+				+1.0
1,449,846	+				+1.9
1,449,846	+				+0.4
1,449,846	+				+1.3
1,449,847	-				-0.1
1,449,847	-				+0.3
1,449,847	-				+1.1
1,449,847	-				+1.5
1,449,847	-				+1.2
1,449,847	-				+0.1
1,449,847	-				-0.0
1,449,847	-				-1.2
1,449,920	-				+1.6
1,449,920	-				+0.8
1,449,920	-				+2.9
1,449,970	+				+1.2
1,449,970	+				-0.5
1,449,970	+				-0.8
1,449,970	+				+0.8
1,449,970	+				+1.2
1,449,970	+				+0.3
1,449,971	-				+0.2
1,449,971	-				+2.0
1,449,971	-				+1.3
1,449,971	-				+3.4
1,450,116	+		PFLU_RS06485	0.15	+1.7
1,450,117	-		PFLU_RS06485	0.15	+2.6
1,450,117	-		PFLU_RS06485	0.15	+1.9
1,450,141	+		PFLU_RS06485	0.17	+0.5
1,450,141	+		PFLU_RS06485	0.17	-0.8
1,450,141	+		PFLU_RS06485	0.17	+1.9
1,450,141	+		PFLU_RS06485	0.17	+1.4
1,450,141	+		PFLU_RS06485	0.17	+1.6
1,450,142	-		PFLU_RS06485	0.17	-1.5
1,450,142	-		PFLU_RS06485	0.17	+1.8
1,450,142	-		PFLU_RS06485	0.17	-0.1
1,450,142	-		PFLU_RS06485	0.17	+0.6
1,450,142	-		PFLU_RS06485	0.17	+2.4
1,450,142	-		PFLU_RS06485	0.17	-2.0
1,450,183	-		PFLU_RS06485	0.19	+0.8
1,450,183	-		PFLU_RS06485	0.19	+1.0
1,450,183	-		PFLU_RS06485	0.19	-2.6
1,450,183	-		PFLU_RS06485	0.19	+2.9
1,450,183	-		PFLU_RS06485	0.19	+2.0
1,450,192	-		PFLU_RS06485	0.20	+2.6
1,450,192	-		PFLU_RS06485	0.20	-0.5
1,450,227	+		PFLU_RS06485	0.22	+1.3
1,450,227	+		PFLU_RS06485	0.22	+1.7
1,450,227	+		PFLU_RS06485	0.22	+0.6
1,450,228	-		PFLU_RS06485	0.22	+2.7
1,450,228	-		PFLU_RS06485	0.22	-0.5
1,450,228	-		PFLU_RS06485	0.22	+1.5
1,450,228	-		PFLU_RS06485	0.22	+1.7
1,450,308	+		PFLU_RS06485	0.27	+0.0
1,450,308	+		PFLU_RS06485	0.27	+0.7
1,450,308	+		PFLU_RS06485	0.27	-1.7
1,450,308	+		PFLU_RS06485	0.27	-0.2
1,450,309	-		PFLU_RS06485	0.27	-1.7
1,450,309	-		PFLU_RS06485	0.27	-0.3
1,450,424	+		PFLU_RS06485	0.34	-2.8
1,450,424	+		PFLU_RS06485	0.34	+1.8
1,450,425	-		PFLU_RS06485	0.34	+0.8
1,450,425	-		PFLU_RS06485	0.34	-2.7
1,450,525	-		PFLU_RS06485	0.40	+0.7
1,450,557	-		PFLU_RS06485	0.42	+0.1
1,450,557	-		PFLU_RS06485	0.42	+0.9
1,450,557	-		PFLU_RS06485	0.42	+2.0