Strain Fitness in Pseudomonas fluorescens SBW25 around PFLU_RS04335

Experiment: acetate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPFLU_RS04330 and PFLU_RS04335 are separated by 48 nucleotidesPFLU_RS04335 and PFLU_RS04340 are separated by 16 nucleotides PFLU_RS04330: PFLU_RS04330 - TIGR02099 family protein, at 977,123 to 980,938 _RS04330 PFLU_RS04335: PFLU_RS04335 - carbon-nitrogen hydrolase family protein, at 980,987 to 981,835 _RS04335 PFLU_RS04340: PFLU_RS04340 - metalloprotease TldD, at 981,852 to 983,294 _RS04340 Position (kb) 980 981 982Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 980.030 kb on + strand, within PFLU_RS04330at 980.030 kb on + strand, within PFLU_RS04330at 980.030 kb on + strand, within PFLU_RS04330at 980.030 kb on + strand, within PFLU_RS04330at 980.030 kb on + strand, within PFLU_RS04330at 980.030 kb on + strand, within PFLU_RS04330at 980.030 kb on + strand, within PFLU_RS04330at 980.030 kb on + strand, within PFLU_RS04330at 980.030 kb on + strand, within PFLU_RS04330at 980.031 kb on - strand, within PFLU_RS04330at 980.031 kb on - strand, within PFLU_RS04330at 980.031 kb on - strand, within PFLU_RS04330at 980.031 kb on - strand, within PFLU_RS04330at 980.031 kb on - strand, within PFLU_RS04330at 980.031 kb on - strand, within PFLU_RS04330at 980.031 kb on - strand, within PFLU_RS04330at 980.031 kb on - strand, within PFLU_RS04330at 980.114 kb on - strand, within PFLU_RS04330at 980.166 kb on + strand, within PFLU_RS04330at 980.166 kb on + strand, within PFLU_RS04330at 980.166 kb on + strand, within PFLU_RS04330at 980.166 kb on + strand, within PFLU_RS04330at 980.166 kb on + strand, within PFLU_RS04330at 980.167 kb on - strand, within PFLU_RS04330at 980.167 kb on - strand, within PFLU_RS04330at 980.167 kb on - strand, within PFLU_RS04330at 980.167 kb on - strand, within PFLU_RS04330at 980.167 kb on - strand, within PFLU_RS04330at 980.167 kb on - strand, within PFLU_RS04330at 980.167 kb on - strand, within PFLU_RS04330at 980.300 kb on + strand, within PFLU_RS04330at 980.300 kb on + strand, within PFLU_RS04330at 980.300 kb on + strand, within PFLU_RS04330at 980.300 kb on + strand, within PFLU_RS04330at 980.301 kb on - strand, within PFLU_RS04330at 980.301 kb on - strand, within PFLU_RS04330at 980.301 kb on - strand, within PFLU_RS04330at 980.301 kb on - strand, within PFLU_RS04330at 980.301 kb on - strand, within PFLU_RS04330at 980.301 kb on - strand, within PFLU_RS04330at 980.301 kb on - strand, within PFLU_RS04330at 980.301 kb on - strand, within PFLU_RS04330at 980.301 kb on - strand, within PFLU_RS04330at 980.301 kb on - strand, within PFLU_RS04330at 980.423 kb on + strand, within PFLU_RS04330at 980.423 kb on + strand, within PFLU_RS04330at 980.423 kb on + strand, within PFLU_RS04330at 980.423 kb on + strand, within PFLU_RS04330at 980.423 kb on + strand, within PFLU_RS04330at 980.423 kb on + strand, within PFLU_RS04330at 980.423 kb on + strand, within PFLU_RS04330at 980.423 kb on + strand, within PFLU_RS04330at 980.424 kb on - strand, within PFLU_RS04330at 980.424 kb on - strand, within PFLU_RS04330at 980.424 kb on - strand, within PFLU_RS04330at 980.424 kb on - strand, within PFLU_RS04330at 980.424 kb on - strand, within PFLU_RS04330at 980.424 kb on - strand, within PFLU_RS04330at 980.424 kb on - strand, within PFLU_RS04330at 980.424 kb on - strand, within PFLU_RS04330at 980.424 kb on - strand, within PFLU_RS04330at 980.424 kb on - strand, within PFLU_RS04330at 980.424 kb on - strand, within PFLU_RS04330at 980.424 kb on - strand, within PFLU_RS04330at 980.597 kb on + strandat 980.598 kb on - strandat 980.598 kb on - strandat 980.598 kb on - strandat 980.598 kb on - strandat 980.598 kb on - strandat 980.607 kb on + strandat 980.608 kb on - strandat 980.681 kb on - strandat 980.870 kb on + strandat 980.870 kb on + strandat 980.870 kb on + strandat 980.870 kb on + strandat 980.871 kb on - strandat 980.871 kb on - strandat 980.871 kb on - strandat 980.871 kb on - strandat 980.871 kb on - strandat 980.871 kb on - strandat 980.871 kb on - strandat 980.952 kb on - strandat 980.952 kb on - strandat 980.952 kb on - strandat 980.952 kb on - strandat 980.952 kb on - strandat 980.952 kb on - strandat 980.952 kb on - strandat 980.971 kb on + strandat 981.001 kb on - strandat 981.216 kb on + strand, within PFLU_RS04335at 981.216 kb on + strand, within PFLU_RS04335at 981.217 kb on - strand, within PFLU_RS04335at 981.392 kb on + strand, within PFLU_RS04335at 981.392 kb on + strand, within PFLU_RS04335at 981.392 kb on + strand, within PFLU_RS04335at 981.392 kb on + strand, within PFLU_RS04335at 981.392 kb on + strand, within PFLU_RS04335at 981.393 kb on - strand, within PFLU_RS04335at 981.393 kb on - strand, within PFLU_RS04335at 981.393 kb on - strand, within PFLU_RS04335at 981.393 kb on - strand, within PFLU_RS04335at 981.393 kb on - strand, within PFLU_RS04335at 981.393 kb on - strand, within PFLU_RS04335at 981.393 kb on - strand, within PFLU_RS04335at 981.459 kb on - strand, within PFLU_RS04335at 981.483 kb on - strand, within PFLU_RS04335at 981.483 kb on - strand, within PFLU_RS04335at 981.570 kb on + strand, within PFLU_RS04335at 981.570 kb on + strand, within PFLU_RS04335at 981.570 kb on + strand, within PFLU_RS04335at 981.571 kb on - strand, within PFLU_RS04335at 981.602 kb on + strand, within PFLU_RS04335at 981.602 kb on + strand, within PFLU_RS04335at 981.602 kb on + strand, within PFLU_RS04335at 981.602 kb on + strand, within PFLU_RS04335at 981.602 kb on + strand, within PFLU_RS04335at 981.603 kb on - strand, within PFLU_RS04335at 981.653 kb on + strand, within PFLU_RS04335at 981.654 kb on - strand, within PFLU_RS04335at 981.654 kb on - strand, within PFLU_RS04335at 981.654 kb on - strand, within PFLU_RS04335at 981.654 kb on - strand, within PFLU_RS04335at 981.654 kb on - strand, within PFLU_RS04335at 981.654 kb on - strand, within PFLU_RS04335at 981.739 kb on + strand, within PFLU_RS04335at 981.840 kb on - strandat 981.847 kb on + strandat 981.848 kb on - strandat 981.848 kb on - strandat 981.848 kb on - strandat 981.851 kb on + strandat 981.851 kb on + strandat 981.851 kb on + strandat 981.851 kb on + strandat 981.851 kb on + strandat 981.851 kb on + strandat 981.851 kb on + strandat 981.851 kb on + strandat 981.851 kb on + strandat 981.851 kb on + strandat 981.851 kb on + strandat 981.851 kb on + strandat 981.851 kb on + strandat 981.851 kb on + strandat 981.852 kb on - strandat 981.852 kb on - strandat 981.852 kb on - strandat 981.852 kb on - strandat 981.852 kb on - strandat 981.852 kb on - strandat 981.972 kb on + strandat 981.972 kb on + strandat 981.973 kb on - strandat 982.095 kb on + strand, within PFLU_RS04340at 982.095 kb on + strand, within PFLU_RS04340at 982.096 kb on - strand, within PFLU_RS04340at 982.100 kb on + strand, within PFLU_RS04340at 982.101 kb on - strand, within PFLU_RS04340at 982.215 kb on + strand, within PFLU_RS04340at 982.215 kb on + strand, within PFLU_RS04340at 982.215 kb on + strand, within PFLU_RS04340at 982.215 kb on + strand, within PFLU_RS04340at 982.216 kb on - strand, within PFLU_RS04340at 982.216 kb on - strand, within PFLU_RS04340at 982.216 kb on - strand, within PFLU_RS04340at 982.216 kb on - strand, within PFLU_RS04340at 982.216 kb on - strand, within PFLU_RS04340at 982.277 kb on + strand, within PFLU_RS04340at 982.486 kb on - strand, within PFLU_RS04340at 982.491 kb on + strand, within PFLU_RS04340at 982.491 kb on + strand, within PFLU_RS04340at 982.492 kb on - strand, within PFLU_RS04340at 982.492 kb on - strand, within PFLU_RS04340at 982.521 kb on + strand, within PFLU_RS04340

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Per-strain Table

Position Strand Gene LocusTag Fraction acetate (C)
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980,030 + PFLU_RS04330 0.76 +1.3
980,030 + PFLU_RS04330 0.76 +1.3
980,030 + PFLU_RS04330 0.76 +1.2
980,030 + PFLU_RS04330 0.76 +0.5
980,030 + PFLU_RS04330 0.76 +1.4
980,030 + PFLU_RS04330 0.76 -0.0
980,030 + PFLU_RS04330 0.76 -0.3
980,030 + PFLU_RS04330 0.76 +0.7
980,030 + PFLU_RS04330 0.76 +0.9
980,031 - PFLU_RS04330 0.76 +0.0
980,031 - PFLU_RS04330 0.76 +2.7
980,031 - PFLU_RS04330 0.76 +2.7
980,031 - PFLU_RS04330 0.76 -0.1
980,031 - PFLU_RS04330 0.76 +0.4
980,031 - PFLU_RS04330 0.76 -1.6
980,031 - PFLU_RS04330 0.76 -2.3
980,031 - PFLU_RS04330 0.76 +1.3
980,114 - PFLU_RS04330 0.78 -0.1
980,166 + PFLU_RS04330 0.80 -0.3
980,166 + PFLU_RS04330 0.80 +1.8
980,166 + PFLU_RS04330 0.80 -2.4
980,166 + PFLU_RS04330 0.80 +0.4
980,166 + PFLU_RS04330 0.80 -0.1
980,167 - PFLU_RS04330 0.80 -2.0
980,167 - PFLU_RS04330 0.80 +0.3
980,167 - PFLU_RS04330 0.80 +2.3
980,167 - PFLU_RS04330 0.80 +2.4
980,167 - PFLU_RS04330 0.80 -0.4
980,167 - PFLU_RS04330 0.80 +2.1
980,167 - PFLU_RS04330 0.80 +0.6
980,300 + PFLU_RS04330 0.83 +1.4
980,300 + PFLU_RS04330 0.83 +1.1
980,300 + PFLU_RS04330 0.83 +1.2
980,300 + PFLU_RS04330 0.83 -1.4
980,301 - PFLU_RS04330 0.83 -1.6
980,301 - PFLU_RS04330 0.83 +1.0
980,301 - PFLU_RS04330 0.83 -0.5
980,301 - PFLU_RS04330 0.83 +0.7
980,301 - PFLU_RS04330 0.83 -2.2
980,301 - PFLU_RS04330 0.83 +1.1
980,301 - PFLU_RS04330 0.83 -1.0
980,301 - PFLU_RS04330 0.83 +0.7
980,301 - PFLU_RS04330 0.83 -1.3
980,301 - PFLU_RS04330 0.83 -0.4
980,423 + PFLU_RS04330 0.86 +0.3
980,423 + PFLU_RS04330 0.86 +2.7
980,423 + PFLU_RS04330 0.86 +1.3
980,423 + PFLU_RS04330 0.86 +1.3
980,423 + PFLU_RS04330 0.86 -0.7
980,423 + PFLU_RS04330 0.86 -1.2
980,423 + PFLU_RS04330 0.86 +0.9
980,423 + PFLU_RS04330 0.86 -1.0
980,424 - PFLU_RS04330 0.87 -1.1
980,424 - PFLU_RS04330 0.87 +1.9
980,424 - PFLU_RS04330 0.87 +0.8
980,424 - PFLU_RS04330 0.87 -0.0
980,424 - PFLU_RS04330 0.87 -0.3
980,424 - PFLU_RS04330 0.87 +0.2
980,424 - PFLU_RS04330 0.87 +0.5
980,424 - PFLU_RS04330 0.87 -1.2
980,424 - PFLU_RS04330 0.87 +2.0
980,424 - PFLU_RS04330 0.87 +1.0
980,424 - PFLU_RS04330 0.87 +1.5
980,424 - PFLU_RS04330 0.87 -0.0
980,597 + +2.3
980,598 - +1.5
980,598 - -0.8
980,598 - -0.7
980,598 - +1.1
980,598 - -0.5
980,607 + -0.2
980,608 - +0.8
980,681 - -0.0
980,870 + +3.0
980,870 + +1.3
980,870 + +1.1
980,870 + -0.2
980,871 - -1.4
980,871 - +0.3
980,871 - -1.3
980,871 - +0.3
980,871 - -1.2
980,871 - +0.5
980,871 - -0.3
980,952 - +1.4
980,952 - +0.8
980,952 - -1.2
980,952 - +1.3
980,952 - +1.4
980,952 - -0.8
980,952 - +1.4
980,971 + -1.1
981,001 - -2.4
981,216 + PFLU_RS04335 0.27 -2.3
981,216 + PFLU_RS04335 0.27 +1.3
981,217 - PFLU_RS04335 0.27 +0.7
981,392 + PFLU_RS04335 0.48 +1.9
981,392 + PFLU_RS04335 0.48 +3.1
981,392 + PFLU_RS04335 0.48 +1.4
981,392 + PFLU_RS04335 0.48 -1.9
981,392 + PFLU_RS04335 0.48 -1.8
981,393 - PFLU_RS04335 0.48 +3.4
981,393 - PFLU_RS04335 0.48 +0.4
981,393 - PFLU_RS04335 0.48 -2.5
981,393 - PFLU_RS04335 0.48 +1.9
981,393 - PFLU_RS04335 0.48 -0.5
981,393 - PFLU_RS04335 0.48 +0.5
981,393 - PFLU_RS04335 0.48 -0.1
981,459 - PFLU_RS04335 0.56 -0.7
981,483 - PFLU_RS04335 0.58 -0.2
981,483 - PFLU_RS04335 0.58 -0.5
981,570 + PFLU_RS04335 0.69 -0.7
981,570 + PFLU_RS04335 0.69 -1.2
981,570 + PFLU_RS04335 0.69 -0.9
981,571 - PFLU_RS04335 0.69 -0.3
981,602 + PFLU_RS04335 0.72 -1.4
981,602 + PFLU_RS04335 0.72 -1.4
981,602 + PFLU_RS04335 0.72 +1.9
981,602 + PFLU_RS04335 0.72 +0.6
981,602 + PFLU_RS04335 0.72 -0.1
981,603 - PFLU_RS04335 0.73 -0.8
981,653 + PFLU_RS04335 0.78 +1.3
981,654 - PFLU_RS04335 0.79 +1.8
981,654 - PFLU_RS04335 0.79 +0.1
981,654 - PFLU_RS04335 0.79 +0.9
981,654 - PFLU_RS04335 0.79 -2.4
981,654 - PFLU_RS04335 0.79 -0.0
981,654 - PFLU_RS04335 0.79 +0.0
981,739 + PFLU_RS04335 0.89 +0.6
981,840 - +2.0
981,847 + +1.3
981,848 - +0.6
981,848 - +1.2
981,848 - +1.1
981,851 + +0.9
981,851 + +0.4
981,851 + +2.3
981,851 + +0.7
981,851 + +0.3
981,851 + -1.9
981,851 + +0.5
981,851 + -1.5
981,851 + +0.1
981,851 + +2.3
981,851 + -0.1
981,851 + -1.2
981,851 + +1.3
981,851 + -1.3
981,852 - +1.6
981,852 - +0.7
981,852 - +0.3
981,852 - -2.5
981,852 - -2.8
981,852 - -0.0
981,972 + -3.0
981,972 + +0.2
981,973 - -0.3
982,095 + PFLU_RS04340 0.17 -1.2
982,095 + PFLU_RS04340 0.17 -2.0
982,096 - PFLU_RS04340 0.17 +1.7
982,100 + PFLU_RS04340 0.17 +0.8
982,101 - PFLU_RS04340 0.17 +2.6
982,215 + PFLU_RS04340 0.25 +0.9
982,215 + PFLU_RS04340 0.25 -1.7
982,215 + PFLU_RS04340 0.25 +0.2
982,215 + PFLU_RS04340 0.25 -0.4
982,216 - PFLU_RS04340 0.25 -0.8
982,216 - PFLU_RS04340 0.25 +0.3
982,216 - PFLU_RS04340 0.25 +0.7
982,216 - PFLU_RS04340 0.25 +0.4
982,216 - PFLU_RS04340 0.25 +1.7
982,277 + PFLU_RS04340 0.29 -1.5
982,486 - PFLU_RS04340 0.44 +1.8
982,491 + PFLU_RS04340 0.44 -0.9
982,491 + PFLU_RS04340 0.44 +0.4
982,492 - PFLU_RS04340 0.44 -1.0
982,492 - PFLU_RS04340 0.44 -1.8
982,521 + PFLU_RS04340 0.46 +1.2

Or see this region's nucleotide sequence