Experiment: acetate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PFLU_RS03505 and PFLU_RS03510 are separated by 154 nucleotides PFLU_RS03510 and PFLU_RS03515 are separated by 208 nucleotides
PFLU_RS03505: PFLU_RS03505 - D-alanine--D-alanine ligase, at 809,019 to 810,113
_RS03505
PFLU_RS03510: PFLU_RS03510 - gamma-glutamyltransferase, at 810,268 to 812,097
_RS03510
PFLU_RS03515: PFLU_RS03515 - AvrE-family type 3 secretion system effector, at 812,306 to 816,631
_RS03515
Position (kb) 810
811
812
813 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 809.413 kb on + strand, within PFLU_RS03505 at 809.414 kb on - strand, within PFLU_RS03505 at 809.596 kb on + strand, within PFLU_RS03505 at 809.606 kb on + strand, within PFLU_RS03505 at 809.606 kb on + strand, within PFLU_RS03505 at 809.606 kb on + strand, within PFLU_RS03505 at 809.778 kb on + strand, within PFLU_RS03505 at 809.778 kb on + strand, within PFLU_RS03505 at 809.778 kb on + strand, within PFLU_RS03505 at 809.779 kb on - strand, within PFLU_RS03505 at 809.779 kb on - strand, within PFLU_RS03505 at 809.785 kb on - strand, within PFLU_RS03505 at 809.796 kb on + strand, within PFLU_RS03505 at 809.796 kb on + strand, within PFLU_RS03505 at 809.796 kb on + strand, within PFLU_RS03505 at 809.796 kb on + strand, within PFLU_RS03505 at 809.796 kb on + strand, within PFLU_RS03505 at 809.796 kb on + strand, within PFLU_RS03505 at 809.796 kb on + strand, within PFLU_RS03505 at 809.796 kb on + strand, within PFLU_RS03505 at 809.796 kb on + strand, within PFLU_RS03505 at 809.796 kb on + strand, within PFLU_RS03505 at 809.796 kb on + strand, within PFLU_RS03505 at 809.797 kb on - strand, within PFLU_RS03505 at 809.797 kb on - strand, within PFLU_RS03505 at 809.797 kb on - strand, within PFLU_RS03505 at 809.797 kb on - strand, within PFLU_RS03505 at 809.798 kb on + strand, within PFLU_RS03505 at 809.799 kb on - strand, within PFLU_RS03505 at 809.837 kb on + strand, within PFLU_RS03505 at 810.000 kb on + strand, within PFLU_RS03505 at 810.001 kb on - strand, within PFLU_RS03505 at 810.033 kb on + strand at 810.033 kb on + strand at 810.033 kb on + strand at 810.034 kb on - strand at 810.133 kb on - strand at 810.133 kb on - strand at 810.133 kb on - strand at 810.133 kb on - strand at 810.133 kb on - strand at 810.133 kb on - strand at 810.133 kb on - strand at 810.133 kb on - strand at 810.133 kb on - strand at 810.220 kb on + strand at 810.221 kb on - strand at 810.261 kb on + strand at 810.261 kb on + strand at 810.261 kb on + strand at 810.261 kb on + strand at 810.261 kb on + strand at 810.261 kb on + strand at 810.261 kb on + strand at 810.261 kb on + strand at 810.261 kb on + strand at 810.261 kb on + strand at 810.261 kb on + strand at 810.261 kb on + strand at 810.262 kb on - strand at 810.262 kb on - strand at 810.361 kb on + strand at 810.362 kb on - strand at 810.376 kb on - strand at 810.393 kb on + strand at 810.393 kb on + strand at 810.393 kb on + strand at 810.394 kb on - strand at 810.394 kb on - strand at 810.394 kb on - strand at 810.438 kb on + strand at 810.439 kb on - strand at 810.540 kb on + strand, within PFLU_RS03510 at 810.540 kb on + strand, within PFLU_RS03510 at 810.540 kb on + strand, within PFLU_RS03510 at 810.541 kb on - strand, within PFLU_RS03510 at 810.541 kb on - strand, within PFLU_RS03510 at 810.541 kb on - strand, within PFLU_RS03510 at 810.541 kb on - strand, within PFLU_RS03510 at 810.548 kb on + strand, within PFLU_RS03510 at 810.549 kb on - strand, within PFLU_RS03510 at 810.549 kb on - strand, within PFLU_RS03510 at 810.592 kb on + strand, within PFLU_RS03510 at 810.592 kb on + strand, within PFLU_RS03510 at 810.592 kb on + strand, within PFLU_RS03510 at 810.593 kb on - strand, within PFLU_RS03510 at 810.863 kb on + strand, within PFLU_RS03510 at 810.947 kb on + strand, within PFLU_RS03510 at 810.948 kb on - strand, within PFLU_RS03510 at 810.948 kb on - strand, within PFLU_RS03510 at 811.002 kb on + strand, within PFLU_RS03510 at 811.004 kb on + strand, within PFLU_RS03510 at 811.004 kb on + strand, within PFLU_RS03510 at 811.004 kb on + strand, within PFLU_RS03510 at 811.004 kb on + strand, within PFLU_RS03510 at 811.004 kb on + strand, within PFLU_RS03510 at 811.004 kb on + strand, within PFLU_RS03510 at 811.005 kb on - strand, within PFLU_RS03510 at 811.005 kb on - strand, within PFLU_RS03510 at 811.005 kb on - strand, within PFLU_RS03510 at 811.005 kb on - strand, within PFLU_RS03510 at 811.005 kb on - strand, within PFLU_RS03510 at 811.005 kb on - strand, within PFLU_RS03510 at 811.005 kb on - strand, within PFLU_RS03510 at 811.230 kb on - strand, within PFLU_RS03510 at 811.236 kb on + strand, within PFLU_RS03510 at 811.236 kb on + strand, within PFLU_RS03510 at 811.237 kb on - strand, within PFLU_RS03510 at 811.265 kb on + strand, within PFLU_RS03510 at 811.266 kb on - strand, within PFLU_RS03510 at 811.352 kb on + strand, within PFLU_RS03510 at 811.353 kb on - strand, within PFLU_RS03510 at 811.422 kb on + strand, within PFLU_RS03510 at 811.460 kb on + strand, within PFLU_RS03510 at 811.490 kb on + strand, within PFLU_RS03510 at 811.490 kb on + strand, within PFLU_RS03510 at 811.490 kb on + strand, within PFLU_RS03510 at 811.490 kb on + strand, within PFLU_RS03510 at 811.491 kb on - strand, within PFLU_RS03510 at 811.491 kb on - strand, within PFLU_RS03510 at 811.624 kb on + strand, within PFLU_RS03510 at 811.624 kb on + strand, within PFLU_RS03510 at 811.624 kb on + strand, within PFLU_RS03510 at 811.624 kb on + strand, within PFLU_RS03510 at 811.624 kb on + strand, within PFLU_RS03510 at 811.624 kb on + strand, within PFLU_RS03510 at 811.624 kb on + strand, within PFLU_RS03510 at 811.624 kb on + strand, within PFLU_RS03510 at 811.624 kb on + strand, within PFLU_RS03510 at 811.624 kb on + strand, within PFLU_RS03510 at 811.624 kb on + strand, within PFLU_RS03510 at 811.624 kb on + strand, within PFLU_RS03510 at 811.624 kb on + strand, within PFLU_RS03510 at 811.624 kb on + strand, within PFLU_RS03510 at 811.624 kb on + strand, within PFLU_RS03510 at 811.624 kb on + strand, within PFLU_RS03510 at 811.624 kb on + strand, within PFLU_RS03510 at 811.625 kb on - strand, within PFLU_RS03510 at 811.625 kb on - strand, within PFLU_RS03510 at 811.625 kb on - strand, within PFLU_RS03510 at 811.625 kb on - strand, within PFLU_RS03510 at 811.625 kb on - strand, within PFLU_RS03510 at 811.625 kb on - strand, within PFLU_RS03510 at 811.625 kb on - strand, within PFLU_RS03510 at 811.748 kb on + strand, within PFLU_RS03510 at 811.749 kb on - strand, within PFLU_RS03510 at 811.749 kb on - strand, within PFLU_RS03510 at 811.963 kb on - strand at 812.141 kb on - strand at 812.253 kb on + strand at 812.254 kb on - strand at 812.303 kb on - strand at 812.303 kb on - strand at 812.313 kb on + strand at 812.313 kb on + strand at 812.313 kb on + strand at 812.313 kb on + strand at 812.313 kb on + strand at 812.313 kb on + strand at 812.313 kb on + strand at 812.313 kb on + strand at 812.313 kb on + strand at 812.313 kb on + strand at 812.313 kb on + strand at 812.313 kb on + strand at 812.314 kb on - strand at 812.314 kb on - strand at 812.314 kb on - strand at 812.314 kb on - strand at 812.314 kb on - strand at 812.314 kb on - strand at 812.314 kb on - strand at 812.314 kb on - strand at 812.314 kb on - strand at 812.314 kb on - strand at 812.337 kb on + strand at 812.338 kb on - strand at 812.338 kb on - strand at 812.351 kb on - strand at 812.490 kb on + strand at 812.491 kb on - strand at 812.491 kb on - strand at 812.491 kb on - strand at 812.500 kb on + strand at 812.522 kb on - strand at 812.522 kb on - strand at 812.549 kb on - strand at 812.555 kb on + strand at 812.555 kb on + strand at 812.555 kb on + strand at 812.555 kb on + strand at 812.555 kb on + strand at 812.555 kb on + strand at 812.555 kb on + strand at 812.555 kb on + strand at 812.555 kb on + strand at 812.556 kb on - strand at 812.556 kb on - strand at 812.556 kb on - strand at 812.556 kb on - strand at 812.618 kb on + strand at 812.619 kb on - strand at 812.619 kb on - strand at 812.751 kb on + strand, within PFLU_RS03515 at 812.751 kb on + strand, within PFLU_RS03515 at 812.751 kb on + strand, within PFLU_RS03515 at 812.752 kb on - strand, within PFLU_RS03515 at 812.752 kb on - strand, within PFLU_RS03515 at 812.752 kb on - strand, within PFLU_RS03515 at 812.752 kb on - strand, within PFLU_RS03515 at 812.752 kb on - strand, within PFLU_RS03515 at 813.018 kb on + strand, within PFLU_RS03515 at 813.019 kb on - strand, within PFLU_RS03515 at 813.038 kb on - strand, within PFLU_RS03515 at 813.063 kb on - strand, within PFLU_RS03515 at 813.063 kb on - strand, within PFLU_RS03515 at 813.063 kb on - strand, within PFLU_RS03515 at 813.070 kb on + strand, within PFLU_RS03515 at 813.071 kb on - strand, within PFLU_RS03515
Per-strain Table
Position Strand Gene LocusTag Fraction acetate (C) remove 809,413 + PFLU_RS03505 0.36 +0.5 809,414 - PFLU_RS03505 0.36 -0.5 809,596 + PFLU_RS03505 0.53 +1.3 809,606 + PFLU_RS03505 0.54 -2.5 809,606 + PFLU_RS03505 0.54 +0.3 809,606 + PFLU_RS03505 0.54 +0.1 809,778 + PFLU_RS03505 0.69 +0.9 809,778 + PFLU_RS03505 0.69 +0.8 809,778 + PFLU_RS03505 0.69 -2.1 809,779 - PFLU_RS03505 0.69 -2.5 809,779 - PFLU_RS03505 0.69 -2.4 809,785 - PFLU_RS03505 0.70 +0.9 809,796 + PFLU_RS03505 0.71 -0.2 809,796 + PFLU_RS03505 0.71 +1.9 809,796 + PFLU_RS03505 0.71 -0.9 809,796 + PFLU_RS03505 0.71 +1.5 809,796 + PFLU_RS03505 0.71 -1.7 809,796 + PFLU_RS03505 0.71 -0.8 809,796 + PFLU_RS03505 0.71 -1.8 809,796 + PFLU_RS03505 0.71 +1.5 809,796 + PFLU_RS03505 0.71 +0.9 809,796 + PFLU_RS03505 0.71 +1.9 809,796 + PFLU_RS03505 0.71 -2.3 809,797 - PFLU_RS03505 0.71 +1.9 809,797 - PFLU_RS03505 0.71 -2.4 809,797 - PFLU_RS03505 0.71 +2.0 809,797 - PFLU_RS03505 0.71 +2.4 809,798 + PFLU_RS03505 0.71 -1.4 809,799 - PFLU_RS03505 0.71 +1.0 809,837 + PFLU_RS03505 0.75 +1.5 810,000 + PFLU_RS03505 0.90 +0.8 810,001 - PFLU_RS03505 0.90 +0.7 810,033 + +0.9 810,033 + +1.2 810,033 + +0.0 810,034 - -1.3 810,133 - -1.2 810,133 - -1.1 810,133 - +0.4 810,133 - -1.1 810,133 - -1.5 810,133 - +2.2 810,133 - -0.3 810,133 - +1.4 810,133 - +1.1 810,220 + +1.4 810,221 - +0.5 810,261 + -1.9 810,261 + +0.0 810,261 + -1.5 810,261 + +0.4 810,261 + +0.5 810,261 + -2.6 810,261 + +0.4 810,261 + +1.8 810,261 + -0.6 810,261 + -0.6 810,261 + +0.9 810,261 + +0.7 810,262 - +0.3 810,262 - +0.1 810,361 + -1.4 810,362 - +0.9 810,376 - +2.9 810,393 + -0.5 810,393 + +0.5 810,393 + +0.7 810,394 - -0.3 810,394 - -1.3 810,394 - -2.2 810,438 + -0.4 810,439 - +1.5 810,540 + PFLU_RS03510 0.15 +0.8 810,540 + PFLU_RS03510 0.15 +0.7 810,540 + PFLU_RS03510 0.15 -1.2 810,541 - PFLU_RS03510 0.15 -0.4 810,541 - PFLU_RS03510 0.15 -0.1 810,541 - PFLU_RS03510 0.15 -0.5 810,541 - PFLU_RS03510 0.15 -1.3 810,548 + PFLU_RS03510 0.15 -0.5 810,549 - PFLU_RS03510 0.15 +0.3 810,549 - PFLU_RS03510 0.15 -0.6 810,592 + PFLU_RS03510 0.18 -0.2 810,592 + PFLU_RS03510 0.18 -1.2 810,592 + PFLU_RS03510 0.18 -0.4 810,593 - PFLU_RS03510 0.18 +0.7 810,863 + PFLU_RS03510 0.33 +0.2 810,947 + PFLU_RS03510 0.37 -2.8 810,948 - PFLU_RS03510 0.37 +0.6 810,948 - PFLU_RS03510 0.37 -1.7 811,002 + PFLU_RS03510 0.40 -1.0 811,004 + PFLU_RS03510 0.40 -1.3 811,004 + PFLU_RS03510 0.40 -0.7 811,004 + PFLU_RS03510 0.40 +1.0 811,004 + PFLU_RS03510 0.40 +0.5 811,004 + PFLU_RS03510 0.40 -0.7 811,004 + PFLU_RS03510 0.40 +1.3 811,005 - PFLU_RS03510 0.40 +0.5 811,005 - PFLU_RS03510 0.40 +0.4 811,005 - PFLU_RS03510 0.40 +1.5 811,005 - PFLU_RS03510 0.40 -0.9 811,005 - PFLU_RS03510 0.40 +1.5 811,005 - PFLU_RS03510 0.40 +0.8 811,005 - PFLU_RS03510 0.40 +0.7 811,230 - PFLU_RS03510 0.53 -0.1 811,236 + PFLU_RS03510 0.53 +0.7 811,236 + PFLU_RS03510 0.53 -2.3 811,237 - PFLU_RS03510 0.53 +1.1 811,265 + PFLU_RS03510 0.54 -3.1 811,266 - PFLU_RS03510 0.55 -1.7 811,352 + PFLU_RS03510 0.59 +0.6 811,353 - PFLU_RS03510 0.59 +0.7 811,422 + PFLU_RS03510 0.63 +1.3 811,460 + PFLU_RS03510 0.65 -0.3 811,490 + PFLU_RS03510 0.67 +0.9 811,490 + PFLU_RS03510 0.67 +0.9 811,490 + PFLU_RS03510 0.67 -1.1 811,490 + PFLU_RS03510 0.67 -0.1 811,491 - PFLU_RS03510 0.67 -0.3 811,491 - PFLU_RS03510 0.67 -3.1 811,624 + PFLU_RS03510 0.74 +0.3 811,624 + PFLU_RS03510 0.74 -0.7 811,624 + PFLU_RS03510 0.74 -1.0 811,624 + PFLU_RS03510 0.74 +0.4 811,624 + PFLU_RS03510 0.74 -0.6 811,624 + PFLU_RS03510 0.74 -3.5 811,624 + PFLU_RS03510 0.74 +1.4 811,624 + PFLU_RS03510 0.74 -1.1 811,624 + PFLU_RS03510 0.74 -2.1 811,624 + PFLU_RS03510 0.74 -0.1 811,624 + PFLU_RS03510 0.74 +1.1 811,624 + PFLU_RS03510 0.74 +1.1 811,624 + PFLU_RS03510 0.74 +3.7 811,624 + PFLU_RS03510 0.74 -1.0 811,624 + PFLU_RS03510 0.74 +1.1 811,624 + PFLU_RS03510 0.74 +1.4 811,624 + PFLU_RS03510 0.74 -0.5 811,625 - PFLU_RS03510 0.74 +1.6 811,625 - PFLU_RS03510 0.74 +0.0 811,625 - PFLU_RS03510 0.74 +1.0 811,625 - PFLU_RS03510 0.74 +1.5 811,625 - PFLU_RS03510 0.74 +0.7 811,625 - PFLU_RS03510 0.74 +1.0 811,625 - PFLU_RS03510 0.74 +2.1 811,748 + PFLU_RS03510 0.81 -1.0 811,749 - PFLU_RS03510 0.81 +1.2 811,749 - PFLU_RS03510 0.81 -0.8 811,963 - +2.2 812,141 - -0.1 812,253 + -0.8 812,254 - +0.6 812,303 - +1.5 812,303 - -1.4 812,313 + +0.6 812,313 + -0.2 812,313 + +1.4 812,313 + +1.1 812,313 + -0.6 812,313 + +3.4 812,313 + +0.9 812,313 + +1.7 812,313 + +0.5 812,313 + +1.6 812,313 + -1.5 812,313 + +1.3 812,314 - -0.3 812,314 - +0.7 812,314 - -2.8 812,314 - +1.5 812,314 - -2.4 812,314 - -0.3 812,314 - +2.1 812,314 - -0.5 812,314 - +0.2 812,314 - +0.7 812,337 + -1.8 812,338 - -0.0 812,338 - -1.6 812,351 - +0.7 812,490 + -2.8 812,491 - +1.3 812,491 - +1.1 812,491 - +0.2 812,500 + -3.1 812,522 - -0.8 812,522 - -1.4 812,549 - -1.2 812,555 + -0.2 812,555 + +0.4 812,555 + +2.5 812,555 + +3.1 812,555 + +2.7 812,555 + -1.3 812,555 + -0.8 812,555 + -2.3 812,555 + -1.8 812,556 - +1.4 812,556 - +1.3 812,556 - +0.7 812,556 - -1.5 812,618 + -1.8 812,619 - +0.3 812,619 - +1.7 812,751 + PFLU_RS03515 0.10 +1.0 812,751 + PFLU_RS03515 0.10 -0.4 812,751 + PFLU_RS03515 0.10 +0.9 812,752 - PFLU_RS03515 0.10 +0.5 812,752 - PFLU_RS03515 0.10 -1.6 812,752 - PFLU_RS03515 0.10 +0.5 812,752 - PFLU_RS03515 0.10 +1.1 812,752 - PFLU_RS03515 0.10 -0.8 813,018 + PFLU_RS03515 0.16 -2.5 813,019 - PFLU_RS03515 0.16 -0.1 813,038 - PFLU_RS03515 0.17 +0.7 813,063 - PFLU_RS03515 0.17 +0.1 813,063 - PFLU_RS03515 0.17 -1.4 813,063 - PFLU_RS03515 0.17 +1.3 813,070 + PFLU_RS03515 0.18 +1.6 813,071 - PFLU_RS03515 0.18 +1.6
Or see this region's nucleotide sequence