Strain Fitness in Pseudomonas fluorescens SBW25 around PFLU_RS01820

Experiment: acetate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPFLU_RS01815 and PFLU_RS01820 are separated by 12 nucleotidesPFLU_RS01820 and PFLU_RS01825 are separated by 314 nucleotides PFLU_RS01815: PFLU_RS01815 - imidazolonepropionase, at 408,669 to 409,874 _RS01815 PFLU_RS01820: PFLU_RS01820 - N-formylglutamate deformylase, at 409,887 to 410,687 _RS01820 PFLU_RS01825: PFLU_RS01825 - prolyl aminopeptidase, at 411,002 to 411,973 _RS01825 Position (kb) 409 410 411Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 408.930 kb on + strand, within PFLU_RS01815at 409.197 kb on + strand, within PFLU_RS01815at 409.197 kb on + strand, within PFLU_RS01815at 409.197 kb on + strand, within PFLU_RS01815at 409.197 kb on + strand, within PFLU_RS01815at 409.198 kb on - strand, within PFLU_RS01815at 409.198 kb on - strand, within PFLU_RS01815at 409.218 kb on + strand, within PFLU_RS01815at 409.218 kb on + strand, within PFLU_RS01815at 409.218 kb on + strand, within PFLU_RS01815at 409.218 kb on + strand, within PFLU_RS01815at 409.218 kb on + strand, within PFLU_RS01815at 409.219 kb on - strand, within PFLU_RS01815at 409.219 kb on - strand, within PFLU_RS01815at 409.219 kb on - strand, within PFLU_RS01815at 409.219 kb on - strand, within PFLU_RS01815at 409.219 kb on - strand, within PFLU_RS01815at 409.299 kb on + strand, within PFLU_RS01815at 409.299 kb on + strand, within PFLU_RS01815at 409.524 kb on + strand, within PFLU_RS01815at 409.525 kb on - strand, within PFLU_RS01815at 409.525 kb on - strand, within PFLU_RS01815at 409.525 kb on - strand, within PFLU_RS01815at 409.525 kb on - strand, within PFLU_RS01815at 409.700 kb on + strand, within PFLU_RS01815at 409.700 kb on + strand, within PFLU_RS01815at 409.701 kb on - strand, within PFLU_RS01815at 409.813 kb on - strandat 409.813 kb on - strandat 409.879 kb on + strandat 409.879 kb on + strandat 409.879 kb on + strandat 409.879 kb on + strandat 409.879 kb on + strandat 409.880 kb on - strandat 409.880 kb on - strandat 409.880 kb on - strandat 410.037 kb on + strand, within PFLU_RS01820at 410.037 kb on + strand, within PFLU_RS01820at 410.037 kb on + strand, within PFLU_RS01820at 410.037 kb on + strand, within PFLU_RS01820at 410.038 kb on - strand, within PFLU_RS01820at 410.038 kb on - strand, within PFLU_RS01820at 410.038 kb on - strand, within PFLU_RS01820at 410.038 kb on - strand, within PFLU_RS01820at 410.038 kb on - strand, within PFLU_RS01820at 410.133 kb on + strand, within PFLU_RS01820at 410.133 kb on + strand, within PFLU_RS01820at 410.133 kb on + strand, within PFLU_RS01820at 410.232 kb on + strand, within PFLU_RS01820at 410.232 kb on + strand, within PFLU_RS01820at 410.463 kb on + strand, within PFLU_RS01820at 410.463 kb on + strand, within PFLU_RS01820at 410.464 kb on - strand, within PFLU_RS01820at 410.473 kb on + strand, within PFLU_RS01820at 410.473 kb on + strand, within PFLU_RS01820at 410.473 kb on + strand, within PFLU_RS01820at 410.473 kb on + strand, within PFLU_RS01820at 410.473 kb on + strand, within PFLU_RS01820at 410.473 kb on + strand, within PFLU_RS01820at 410.473 kb on + strand, within PFLU_RS01820at 410.474 kb on - strand, within PFLU_RS01820at 410.474 kb on - strand, within PFLU_RS01820at 410.474 kb on - strand, within PFLU_RS01820at 410.474 kb on - strand, within PFLU_RS01820at 410.474 kb on - strand, within PFLU_RS01820at 410.474 kb on - strand, within PFLU_RS01820at 410.474 kb on - strand, within PFLU_RS01820at 410.474 kb on - strand, within PFLU_RS01820at 410.474 kb on - strand, within PFLU_RS01820at 410.502 kb on - strand, within PFLU_RS01820at 410.514 kb on + strand, within PFLU_RS01820at 410.514 kb on + strand, within PFLU_RS01820at 410.571 kb on + strand, within PFLU_RS01820at 410.571 kb on + strand, within PFLU_RS01820at 410.571 kb on + strand, within PFLU_RS01820at 410.571 kb on + strand, within PFLU_RS01820at 410.571 kb on + strand, within PFLU_RS01820at 410.571 kb on + strand, within PFLU_RS01820at 410.571 kb on + strand, within PFLU_RS01820at 410.571 kb on + strand, within PFLU_RS01820at 410.571 kb on + strand, within PFLU_RS01820at 410.571 kb on + strand, within PFLU_RS01820at 410.571 kb on + strand, within PFLU_RS01820at 410.571 kb on + strand, within PFLU_RS01820at 410.572 kb on - strand, within PFLU_RS01820at 410.572 kb on - strand, within PFLU_RS01820at 410.572 kb on - strand, within PFLU_RS01820at 410.572 kb on - strand, within PFLU_RS01820at 410.572 kb on - strand, within PFLU_RS01820at 410.572 kb on - strand, within PFLU_RS01820at 410.572 kb on - strand, within PFLU_RS01820at 410.572 kb on - strand, within PFLU_RS01820at 410.572 kb on - strand, within PFLU_RS01820at 410.572 kb on - strand, within PFLU_RS01820at 410.572 kb on - strand, within PFLU_RS01820at 410.572 kb on - strand, within PFLU_RS01820at 410.659 kb on + strandat 410.659 kb on + strandat 410.659 kb on + strandat 410.659 kb on + strandat 410.660 kb on - strandat 410.660 kb on - strandat 410.660 kb on - strandat 410.706 kb on + strandat 410.706 kb on + strandat 410.706 kb on + strandat 410.706 kb on + strandat 410.706 kb on + strandat 410.706 kb on + strandat 410.706 kb on + strandat 410.706 kb on + strandat 410.706 kb on + strandat 410.707 kb on - strandat 410.707 kb on - strandat 410.707 kb on - strandat 410.707 kb on - strandat 410.711 kb on - strandat 410.830 kb on - strandat 410.896 kb on + strandat 410.897 kb on - strandat 410.934 kb on + strandat 410.934 kb on + strandat 410.935 kb on - strandat 410.935 kb on - strandat 410.935 kb on - strandat 410.935 kb on - strandat 410.936 kb on + strandat 411.032 kb on + strandat 411.033 kb on - strandat 411.074 kb on + strandat 411.074 kb on + strandat 411.074 kb on + strandat 411.074 kb on + strandat 411.074 kb on + strandat 411.115 kb on - strand, within PFLU_RS01825at 411.115 kb on - strand, within PFLU_RS01825at 411.165 kb on - strand, within PFLU_RS01825at 411.165 kb on - strand, within PFLU_RS01825at 411.357 kb on - strand, within PFLU_RS01825at 411.429 kb on + strand, within PFLU_RS01825at 411.440 kb on + strand, within PFLU_RS01825at 411.441 kb on - strand, within PFLU_RS01825at 411.473 kb on + strand, within PFLU_RS01825at 411.473 kb on + strand, within PFLU_RS01825at 411.485 kb on + strand, within PFLU_RS01825at 411.485 kb on + strand, within PFLU_RS01825at 411.485 kb on + strand, within PFLU_RS01825at 411.485 kb on + strand, within PFLU_RS01825at 411.485 kb on + strand, within PFLU_RS01825at 411.485 kb on + strand, within PFLU_RS01825at 411.485 kb on + strand, within PFLU_RS01825at 411.485 kb on + strand, within PFLU_RS01825at 411.486 kb on - strand, within PFLU_RS01825at 411.486 kb on - strand, within PFLU_RS01825at 411.486 kb on - strand, within PFLU_RS01825at 411.486 kb on - strand, within PFLU_RS01825at 411.486 kb on - strand, within PFLU_RS01825at 411.486 kb on - strand, within PFLU_RS01825at 411.486 kb on - strand, within PFLU_RS01825at 411.486 kb on - strand, within PFLU_RS01825at 411.486 kb on - strand, within PFLU_RS01825at 411.486 kb on - strand, within PFLU_RS01825at 411.533 kb on + strand, within PFLU_RS01825at 411.534 kb on - strand, within PFLU_RS01825

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Per-strain Table

Position Strand Gene LocusTag Fraction acetate (C)
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408,930 + PFLU_RS01815 0.22 +0.2
409,197 + PFLU_RS01815 0.44 +0.1
409,197 + PFLU_RS01815 0.44 +1.9
409,197 + PFLU_RS01815 0.44 -1.1
409,197 + PFLU_RS01815 0.44 +0.2
409,198 - PFLU_RS01815 0.44 +1.1
409,198 - PFLU_RS01815 0.44 +0.1
409,218 + PFLU_RS01815 0.46 -1.6
409,218 + PFLU_RS01815 0.46 +1.5
409,218 + PFLU_RS01815 0.46 -2.9
409,218 + PFLU_RS01815 0.46 +0.6
409,218 + PFLU_RS01815 0.46 +0.5
409,219 - PFLU_RS01815 0.46 -1.5
409,219 - PFLU_RS01815 0.46 -1.1
409,219 - PFLU_RS01815 0.46 +0.1
409,219 - PFLU_RS01815 0.46 -0.2
409,219 - PFLU_RS01815 0.46 -2.7
409,299 + PFLU_RS01815 0.52 +0.2
409,299 + PFLU_RS01815 0.52 +0.2
409,524 + PFLU_RS01815 0.71 +1.1
409,525 - PFLU_RS01815 0.71 +2.0
409,525 - PFLU_RS01815 0.71 -0.7
409,525 - PFLU_RS01815 0.71 -2.6
409,525 - PFLU_RS01815 0.71 -1.1
409,700 + PFLU_RS01815 0.85 -0.2
409,700 + PFLU_RS01815 0.85 -0.6
409,701 - PFLU_RS01815 0.86 -1.3
409,813 - +1.7
409,813 - +0.7
409,879 + -2.5
409,879 + -2.6
409,879 + -1.2
409,879 + +1.4
409,879 + +1.3
409,880 - +0.9
409,880 - +0.8
409,880 - -1.2
410,037 + PFLU_RS01820 0.19 -2.1
410,037 + PFLU_RS01820 0.19 +1.9
410,037 + PFLU_RS01820 0.19 +1.3
410,037 + PFLU_RS01820 0.19 -1.4
410,038 - PFLU_RS01820 0.19 +0.6
410,038 - PFLU_RS01820 0.19 +1.5
410,038 - PFLU_RS01820 0.19 +0.3
410,038 - PFLU_RS01820 0.19 -1.3
410,038 - PFLU_RS01820 0.19 +1.8
410,133 + PFLU_RS01820 0.31 -0.1
410,133 + PFLU_RS01820 0.31 +0.5
410,133 + PFLU_RS01820 0.31 +1.2
410,232 + PFLU_RS01820 0.43 -0.2
410,232 + PFLU_RS01820 0.43 -0.5
410,463 + PFLU_RS01820 0.72 +0.5
410,463 + PFLU_RS01820 0.72 +0.0
410,464 - PFLU_RS01820 0.72 +1.3
410,473 + PFLU_RS01820 0.73 +0.0
410,473 + PFLU_RS01820 0.73 -0.2
410,473 + PFLU_RS01820 0.73 +0.0
410,473 + PFLU_RS01820 0.73 +0.9
410,473 + PFLU_RS01820 0.73 -1.7
410,473 + PFLU_RS01820 0.73 +2.1
410,473 + PFLU_RS01820 0.73 -0.3
410,474 - PFLU_RS01820 0.73 -0.9
410,474 - PFLU_RS01820 0.73 -0.7
410,474 - PFLU_RS01820 0.73 +0.6
410,474 - PFLU_RS01820 0.73 -0.4
410,474 - PFLU_RS01820 0.73 +1.8
410,474 - PFLU_RS01820 0.73 +0.6
410,474 - PFLU_RS01820 0.73 -1.0
410,474 - PFLU_RS01820 0.73 +1.6
410,474 - PFLU_RS01820 0.73 +1.1
410,502 - PFLU_RS01820 0.77 +1.4
410,514 + PFLU_RS01820 0.78 +1.4
410,514 + PFLU_RS01820 0.78 +0.0
410,571 + PFLU_RS01820 0.85 +1.5
410,571 + PFLU_RS01820 0.85 +1.6
410,571 + PFLU_RS01820 0.85 -0.3
410,571 + PFLU_RS01820 0.85 -1.2
410,571 + PFLU_RS01820 0.85 -1.0
410,571 + PFLU_RS01820 0.85 +1.6
410,571 + PFLU_RS01820 0.85 -3.0
410,571 + PFLU_RS01820 0.85 -0.3
410,571 + PFLU_RS01820 0.85 +2.4
410,571 + PFLU_RS01820 0.85 +0.8
410,571 + PFLU_RS01820 0.85 -3.2
410,571 + PFLU_RS01820 0.85 -0.3
410,572 - PFLU_RS01820 0.86 +1.1
410,572 - PFLU_RS01820 0.86 +0.1
410,572 - PFLU_RS01820 0.86 -0.6
410,572 - PFLU_RS01820 0.86 -0.1
410,572 - PFLU_RS01820 0.86 +1.8
410,572 - PFLU_RS01820 0.86 +2.7
410,572 - PFLU_RS01820 0.86 -1.5
410,572 - PFLU_RS01820 0.86 +0.6
410,572 - PFLU_RS01820 0.86 -2.6
410,572 - PFLU_RS01820 0.86 -1.3
410,572 - PFLU_RS01820 0.86 -1.0
410,572 - PFLU_RS01820 0.86 -0.2
410,659 + -2.2
410,659 + +1.8
410,659 + -1.5
410,659 + -0.7
410,660 - -1.9
410,660 - -0.1
410,660 - +0.7
410,706 + +1.0
410,706 + +0.2
410,706 + -1.4
410,706 + +1.0
410,706 + +1.3
410,706 + +2.3
410,706 + +1.3
410,706 + +2.3
410,706 + -1.9
410,707 - -0.2
410,707 - +1.3
410,707 - +2.7
410,707 - +1.5
410,711 - +0.5
410,830 - -2.8
410,896 + +2.9
410,897 - +0.5
410,934 + +2.0
410,934 + +0.4
410,935 - -2.8
410,935 - -0.2
410,935 - -1.6
410,935 - +1.5
410,936 + +1.9
411,032 + -0.2
411,033 - -1.2
411,074 + +0.2
411,074 + -0.9
411,074 + +0.9
411,074 + -0.2
411,074 + -1.4
411,115 - PFLU_RS01825 0.12 +0.9
411,115 - PFLU_RS01825 0.12 +1.7
411,165 - PFLU_RS01825 0.17 -0.2
411,165 - PFLU_RS01825 0.17 -2.9
411,357 - PFLU_RS01825 0.37 +2.3
411,429 + PFLU_RS01825 0.44 +1.0
411,440 + PFLU_RS01825 0.45 +0.9
411,441 - PFLU_RS01825 0.45 -0.3
411,473 + PFLU_RS01825 0.48 -3.9
411,473 + PFLU_RS01825 0.48 -2.3
411,485 + PFLU_RS01825 0.50 -1.9
411,485 + PFLU_RS01825 0.50 +0.1
411,485 + PFLU_RS01825 0.50 +0.5
411,485 + PFLU_RS01825 0.50 -0.2
411,485 + PFLU_RS01825 0.50 -3.1
411,485 + PFLU_RS01825 0.50 +1.2
411,485 + PFLU_RS01825 0.50 +2.7
411,485 + PFLU_RS01825 0.50 +0.8
411,486 - PFLU_RS01825 0.50 -0.6
411,486 - PFLU_RS01825 0.50 -1.2
411,486 - PFLU_RS01825 0.50 -1.9
411,486 - PFLU_RS01825 0.50 -1.8
411,486 - PFLU_RS01825 0.50 +0.1
411,486 - PFLU_RS01825 0.50 -0.5
411,486 - PFLU_RS01825 0.50 +0.2
411,486 - PFLU_RS01825 0.50 -0.4
411,486 - PFLU_RS01825 0.50 -0.6
411,486 - PFLU_RS01825 0.50 -0.5
411,533 + PFLU_RS01825 0.55 +0.2
411,534 - PFLU_RS01825 0.55 -0.9

Or see this region's nucleotide sequence