Strain Fitness in Pseudomonas fluorescens SBW25 around PFLU_RS00625

Experiment: acetate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPFLU_RS00615 and PFLU_RS00620 overlap by 4 nucleotidesPFLU_RS00620 and PFLU_RS00625 overlap by 14 nucleotidesPFLU_RS00625 and PFLU_RS00630 are separated by 372 nucleotides PFLU_RS00615: PFLU_RS00615 - non-ribosomal peptide synthetase, at 128,023 to 131,394 _RS00615 PFLU_RS00620: PFLU_RS00620 - hypothetical protein, at 131,391 to 132,338 _RS00620 PFLU_RS00625: PFLU_RS00625 - DUF3050 domain-containing protein, at 132,325 to 133,092 _RS00625 PFLU_RS00630: PFLU_RS00630 - GntR family transcriptional regulator, at 133,465 to 134,163 _RS00630 Position (kb) 132 133 134Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 131.419 kb on + strandat 131.419 kb on + strandat 131.420 kb on - strandat 131.420 kb on - strandat 131.535 kb on + strand, within PFLU_RS00620at 131.535 kb on + strand, within PFLU_RS00620at 131.536 kb on - strand, within PFLU_RS00620at 131.629 kb on + strand, within PFLU_RS00620at 131.629 kb on + strand, within PFLU_RS00620at 131.629 kb on + strand, within PFLU_RS00620at 131.698 kb on + strand, within PFLU_RS00620at 131.698 kb on + strand, within PFLU_RS00620at 131.949 kb on + strand, within PFLU_RS00620at 131.949 kb on + strand, within PFLU_RS00620at 131.949 kb on + strand, within PFLU_RS00620at 131.949 kb on + strand, within PFLU_RS00620at 131.950 kb on - strand, within PFLU_RS00620at 131.950 kb on - strand, within PFLU_RS00620at 131.950 kb on - strand, within PFLU_RS00620at 131.950 kb on - strand, within PFLU_RS00620at 132.004 kb on + strand, within PFLU_RS00620at 132.004 kb on + strand, within PFLU_RS00620at 132.005 kb on - strand, within PFLU_RS00620at 132.005 kb on - strand, within PFLU_RS00620at 132.005 kb on - strand, within PFLU_RS00620at 132.126 kb on + strand, within PFLU_RS00620at 132.126 kb on + strand, within PFLU_RS00620at 132.126 kb on + strand, within PFLU_RS00620at 132.126 kb on + strand, within PFLU_RS00620at 132.127 kb on - strand, within PFLU_RS00620at 132.143 kb on + strand, within PFLU_RS00620at 132.145 kb on + strand, within PFLU_RS00620at 132.145 kb on + strand, within PFLU_RS00620at 132.146 kb on - strand, within PFLU_RS00620at 132.146 kb on - strand, within PFLU_RS00620at 132.146 kb on - strand, within PFLU_RS00620at 132.146 kb on - strand, within PFLU_RS00620at 132.235 kb on + strand, within PFLU_RS00620at 132.235 kb on + strand, within PFLU_RS00620at 132.235 kb on + strand, within PFLU_RS00620at 132.235 kb on + strand, within PFLU_RS00620at 132.235 kb on + strand, within PFLU_RS00620at 132.235 kb on + strand, within PFLU_RS00620at 132.236 kb on - strand, within PFLU_RS00620at 132.332 kb on + strandat 132.332 kb on + strandat 132.333 kb on - strandat 132.463 kb on + strand, within PFLU_RS00625at 132.463 kb on + strand, within PFLU_RS00625at 132.463 kb on + strand, within PFLU_RS00625at 132.463 kb on + strand, within PFLU_RS00625at 132.463 kb on + strand, within PFLU_RS00625at 132.463 kb on + strand, within PFLU_RS00625at 132.463 kb on + strand, within PFLU_RS00625at 132.464 kb on - strand, within PFLU_RS00625at 132.522 kb on - strand, within PFLU_RS00625at 132.535 kb on - strand, within PFLU_RS00625at 132.562 kb on - strand, within PFLU_RS00625at 132.595 kb on + strand, within PFLU_RS00625at 132.649 kb on + strand, within PFLU_RS00625at 132.697 kb on + strand, within PFLU_RS00625at 132.697 kb on + strand, within PFLU_RS00625at 132.698 kb on - strand, within PFLU_RS00625at 132.750 kb on + strand, within PFLU_RS00625at 132.751 kb on - strand, within PFLU_RS00625at 132.751 kb on - strand, within PFLU_RS00625at 132.751 kb on - strand, within PFLU_RS00625at 132.751 kb on - strand, within PFLU_RS00625at 132.753 kb on + strand, within PFLU_RS00625at 132.753 kb on + strand, within PFLU_RS00625at 132.753 kb on + strand, within PFLU_RS00625at 132.754 kb on - strand, within PFLU_RS00625at 132.754 kb on - strand, within PFLU_RS00625at 132.807 kb on - strand, within PFLU_RS00625at 132.825 kb on + strand, within PFLU_RS00625at 132.826 kb on - strand, within PFLU_RS00625at 132.826 kb on - strand, within PFLU_RS00625at 132.826 kb on - strand, within PFLU_RS00625at 132.826 kb on - strand, within PFLU_RS00625at 132.826 kb on - strand, within PFLU_RS00625at 132.827 kb on + strand, within PFLU_RS00625at 132.828 kb on - strand, within PFLU_RS00625at 132.828 kb on - strand, within PFLU_RS00625at 132.828 kb on - strand, within PFLU_RS00625at 132.985 kb on + strand, within PFLU_RS00625at 132.985 kb on + strand, within PFLU_RS00625at 132.985 kb on + strand, within PFLU_RS00625at 132.986 kb on - strand, within PFLU_RS00625at 133.103 kb on + strandat 133.104 kb on - strandat 133.105 kb on + strandat 133.163 kb on + strandat 133.163 kb on + strandat 133.163 kb on + strandat 133.164 kb on - strandat 133.198 kb on - strandat 133.248 kb on - strandat 133.251 kb on - strandat 133.277 kb on + strandat 133.308 kb on + strandat 133.309 kb on - strandat 133.322 kb on - strandat 133.334 kb on - strandat 133.368 kb on - strandat 133.372 kb on + strandat 133.466 kb on + strandat 133.466 kb on + strandat 133.466 kb on + strandat 133.466 kb on + strandat 133.466 kb on + strandat 133.466 kb on + strandat 133.467 kb on - strandat 133.467 kb on - strandat 133.496 kb on + strandat 133.497 kb on - strandat 133.497 kb on - strandat 133.497 kb on - strandat 133.497 kb on - strandat 133.760 kb on + strand, within PFLU_RS00630at 133.760 kb on + strand, within PFLU_RS00630at 133.760 kb on + strand, within PFLU_RS00630at 133.761 kb on - strand, within PFLU_RS00630at 133.761 kb on - strand, within PFLU_RS00630at 133.761 kb on - strand, within PFLU_RS00630at 133.790 kb on + strand, within PFLU_RS00630at 133.790 kb on + strand, within PFLU_RS00630at 133.790 kb on + strand, within PFLU_RS00630at 133.790 kb on + strand, within PFLU_RS00630at 133.790 kb on + strand, within PFLU_RS00630at 133.790 kb on + strand, within PFLU_RS00630at 133.790 kb on + strand, within PFLU_RS00630at 133.790 kb on + strand, within PFLU_RS00630at 133.790 kb on + strand, within PFLU_RS00630at 133.791 kb on - strand, within PFLU_RS00630at 133.791 kb on - strand, within PFLU_RS00630at 133.791 kb on - strand, within PFLU_RS00630at 133.791 kb on - strand, within PFLU_RS00630at 133.791 kb on - strand, within PFLU_RS00630at 133.791 kb on - strand, within PFLU_RS00630at 133.791 kb on - strand, within PFLU_RS00630at 133.791 kb on - strand, within PFLU_RS00630at 133.791 kb on - strand, within PFLU_RS00630at 133.791 kb on - strand, within PFLU_RS00630at 133.791 kb on - strand, within PFLU_RS00630at 133.791 kb on - strand, within PFLU_RS00630at 133.795 kb on - strand, within PFLU_RS00630at 133.795 kb on - strand, within PFLU_RS00630at 133.795 kb on - strand, within PFLU_RS00630at 133.877 kb on + strand, within PFLU_RS00630at 133.877 kb on + strand, within PFLU_RS00630at 133.877 kb on + strand, within PFLU_RS00630at 133.877 kb on + strand, within PFLU_RS00630at 133.877 kb on + strand, within PFLU_RS00630at 133.877 kb on + strand, within PFLU_RS00630at 133.877 kb on + strand, within PFLU_RS00630at 133.877 kb on + strand, within PFLU_RS00630at 133.877 kb on + strand, within PFLU_RS00630at 133.878 kb on - strand, within PFLU_RS00630at 133.878 kb on - strand, within PFLU_RS00630at 133.878 kb on - strand, within PFLU_RS00630at 133.878 kb on - strand, within PFLU_RS00630at 133.878 kb on - strand, within PFLU_RS00630at 133.878 kb on - strand, within PFLU_RS00630at 133.878 kb on - strand, within PFLU_RS00630at 133.878 kb on - strand, within PFLU_RS00630at 133.878 kb on - strand, within PFLU_RS00630at 133.878 kb on - strand, within PFLU_RS00630at 133.878 kb on - strand, within PFLU_RS00630at 133.878 kb on - strand, within PFLU_RS00630at 134.037 kb on + strand, within PFLU_RS00630at 134.089 kb on + strand, within PFLU_RS00630at 134.090 kb on - strand, within PFLU_RS00630at 134.090 kb on - strand, within PFLU_RS00630

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Per-strain Table

Position Strand Gene LocusTag Fraction acetate (C)
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131,419 + -0.3
131,419 + +1.7
131,420 - +1.4
131,420 - +2.1
131,535 + PFLU_RS00620 0.15 -0.4
131,535 + PFLU_RS00620 0.15 -1.3
131,536 - PFLU_RS00620 0.15 +0.6
131,629 + PFLU_RS00620 0.25 -0.7
131,629 + PFLU_RS00620 0.25 +1.9
131,629 + PFLU_RS00620 0.25 -0.9
131,698 + PFLU_RS00620 0.32 +1.8
131,698 + PFLU_RS00620 0.32 -0.7
131,949 + PFLU_RS00620 0.59 -2.1
131,949 + PFLU_RS00620 0.59 +0.8
131,949 + PFLU_RS00620 0.59 -2.8
131,949 + PFLU_RS00620 0.59 -2.3
131,950 - PFLU_RS00620 0.59 -3.0
131,950 - PFLU_RS00620 0.59 +1.9
131,950 - PFLU_RS00620 0.59 +1.9
131,950 - PFLU_RS00620 0.59 +0.3
132,004 + PFLU_RS00620 0.65 -1.1
132,004 + PFLU_RS00620 0.65 +0.3
132,005 - PFLU_RS00620 0.65 +2.0
132,005 - PFLU_RS00620 0.65 +0.3
132,005 - PFLU_RS00620 0.65 +0.1
132,126 + PFLU_RS00620 0.78 -1.4
132,126 + PFLU_RS00620 0.78 +1.2
132,126 + PFLU_RS00620 0.78 +1.5
132,126 + PFLU_RS00620 0.78 +1.5
132,127 - PFLU_RS00620 0.78 +0.5
132,143 + PFLU_RS00620 0.79 +0.2
132,145 + PFLU_RS00620 0.80 -1.1
132,145 + PFLU_RS00620 0.80 -1.8
132,146 - PFLU_RS00620 0.80 +0.5
132,146 - PFLU_RS00620 0.80 +0.1
132,146 - PFLU_RS00620 0.80 +1.0
132,146 - PFLU_RS00620 0.80 +3.7
132,235 + PFLU_RS00620 0.89 +0.2
132,235 + PFLU_RS00620 0.89 -0.5
132,235 + PFLU_RS00620 0.89 -0.8
132,235 + PFLU_RS00620 0.89 +0.1
132,235 + PFLU_RS00620 0.89 +0.3
132,235 + PFLU_RS00620 0.89 +0.2
132,236 - PFLU_RS00620 0.89 -0.1
132,332 + -3.2
132,332 + -2.5
132,333 - +0.0
132,463 + PFLU_RS00625 0.18 -0.9
132,463 + PFLU_RS00625 0.18 +0.5
132,463 + PFLU_RS00625 0.18 -1.5
132,463 + PFLU_RS00625 0.18 +1.3
132,463 + PFLU_RS00625 0.18 +1.9
132,463 + PFLU_RS00625 0.18 +0.8
132,463 + PFLU_RS00625 0.18 +1.8
132,464 - PFLU_RS00625 0.18 +1.3
132,522 - PFLU_RS00625 0.26 -0.3
132,535 - PFLU_RS00625 0.27 -0.5
132,562 - PFLU_RS00625 0.31 -0.1
132,595 + PFLU_RS00625 0.35 -1.3
132,649 + PFLU_RS00625 0.42 +0.2
132,697 + PFLU_RS00625 0.48 -0.2
132,697 + PFLU_RS00625 0.48 -1.2
132,698 - PFLU_RS00625 0.49 -3.0
132,750 + PFLU_RS00625 0.55 +0.5
132,751 - PFLU_RS00625 0.55 +1.8
132,751 - PFLU_RS00625 0.55 -0.4
132,751 - PFLU_RS00625 0.55 +0.3
132,751 - PFLU_RS00625 0.55 +1.1
132,753 + PFLU_RS00625 0.56 +0.6
132,753 + PFLU_RS00625 0.56 +0.0
132,753 + PFLU_RS00625 0.56 -1.7
132,754 - PFLU_RS00625 0.56 -0.9
132,754 - PFLU_RS00625 0.56 -0.1
132,807 - PFLU_RS00625 0.63 +0.4
132,825 + PFLU_RS00625 0.65 -0.3
132,826 - PFLU_RS00625 0.65 -2.6
132,826 - PFLU_RS00625 0.65 -1.0
132,826 - PFLU_RS00625 0.65 +0.9
132,826 - PFLU_RS00625 0.65 +1.4
132,826 - PFLU_RS00625 0.65 +1.1
132,827 + PFLU_RS00625 0.65 -1.7
132,828 - PFLU_RS00625 0.65 +1.5
132,828 - PFLU_RS00625 0.65 +1.6
132,828 - PFLU_RS00625 0.65 +0.7
132,985 + PFLU_RS00625 0.86 -0.0
132,985 + PFLU_RS00625 0.86 +0.4
132,985 + PFLU_RS00625 0.86 +0.6
132,986 - PFLU_RS00625 0.86 +0.6
133,103 + +0.6
133,104 - -2.7
133,105 + +0.4
133,163 + +0.6
133,163 + +1.2
133,163 + +1.4
133,164 - -0.7
133,198 - +0.6
133,248 - +2.4
133,251 - -0.7
133,277 + -1.7
133,308 + +0.7
133,309 - +0.7
133,322 - +0.8
133,334 - +0.6
133,368 - +0.1
133,372 + +2.9
133,466 + +0.3
133,466 + +0.5
133,466 + +0.4
133,466 + -0.9
133,466 + -0.4
133,466 + -0.5
133,467 - +1.5
133,467 - -0.5
133,496 + +0.9
133,497 - +1.3
133,497 - -1.7
133,497 - -1.6
133,497 - -0.4
133,760 + PFLU_RS00630 0.42 -2.7
133,760 + PFLU_RS00630 0.42 -2.6
133,760 + PFLU_RS00630 0.42 -0.3
133,761 - PFLU_RS00630 0.42 +0.2
133,761 - PFLU_RS00630 0.42 -2.0
133,761 - PFLU_RS00630 0.42 +0.3
133,790 + PFLU_RS00630 0.46 +1.6
133,790 + PFLU_RS00630 0.46 -1.1
133,790 + PFLU_RS00630 0.46 +1.6
133,790 + PFLU_RS00630 0.46 +0.9
133,790 + PFLU_RS00630 0.46 +2.3
133,790 + PFLU_RS00630 0.46 -0.0
133,790 + PFLU_RS00630 0.46 -2.4
133,790 + PFLU_RS00630 0.46 +1.4
133,790 + PFLU_RS00630 0.46 +0.0
133,791 - PFLU_RS00630 0.47 -0.7
133,791 - PFLU_RS00630 0.47 -3.0
133,791 - PFLU_RS00630 0.47 +0.1
133,791 - PFLU_RS00630 0.47 +0.2
133,791 - PFLU_RS00630 0.47 +0.6
133,791 - PFLU_RS00630 0.47 +0.7
133,791 - PFLU_RS00630 0.47 -2.9
133,791 - PFLU_RS00630 0.47 -1.0
133,791 - PFLU_RS00630 0.47 -2.1
133,791 - PFLU_RS00630 0.47 +2.4
133,791 - PFLU_RS00630 0.47 -2.0
133,791 - PFLU_RS00630 0.47 -0.4
133,795 - PFLU_RS00630 0.47 -0.4
133,795 - PFLU_RS00630 0.47 +2.1
133,795 - PFLU_RS00630 0.47 -2.1
133,877 + PFLU_RS00630 0.59 -1.1
133,877 + PFLU_RS00630 0.59 +0.2
133,877 + PFLU_RS00630 0.59 +0.9
133,877 + PFLU_RS00630 0.59 +1.5
133,877 + PFLU_RS00630 0.59 +0.3
133,877 + PFLU_RS00630 0.59 +1.2
133,877 + PFLU_RS00630 0.59 +1.8
133,877 + PFLU_RS00630 0.59 -1.4
133,877 + PFLU_RS00630 0.59 +1.3
133,878 - PFLU_RS00630 0.59 -0.6
133,878 - PFLU_RS00630 0.59 -0.3
133,878 - PFLU_RS00630 0.59 +0.6
133,878 - PFLU_RS00630 0.59 -1.1
133,878 - PFLU_RS00630 0.59 +0.6
133,878 - PFLU_RS00630 0.59 -1.6
133,878 - PFLU_RS00630 0.59 +0.7
133,878 - PFLU_RS00630 0.59 +0.6
133,878 - PFLU_RS00630 0.59 -0.3
133,878 - PFLU_RS00630 0.59 -3.5
133,878 - PFLU_RS00630 0.59 -1.1
133,878 - PFLU_RS00630 0.59 -1.4
134,037 + PFLU_RS00630 0.82 -0.6
134,089 + PFLU_RS00630 0.89 -0.9
134,090 - PFLU_RS00630 0.89 +1.8
134,090 - PFLU_RS00630 0.89 +1.3

Or see this region's nucleotide sequence