Strain Fitness in Pseudomonas sp. S08-1 around OH686_22520

Experiment: Trisodium citrate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOH686_22510 and OH686_22515 overlap by 1 nucleotidesOH686_22515 and OH686_22520 overlap by 4 nucleotidesOH686_22520 and OH686_22525 overlap by 20 nucleotides OH686_22510: OH686_22510 - Putative permease, at 4,572,170 to 4,572,910 _22510 OH686_22515: OH686_22515 - hypothetical protein, at 4,572,910 to 4,573,692 _22515 OH686_22520: OH686_22520 - hypothetical protein, at 4,573,689 to 4,574,606 _22520 OH686_22525: OH686_22525 - Monooxygenase, flavin-binding family, at 4,574,587 to 4,575,963 _22525 Position (kb) 4573 4574 4575Strain fitness (log2 ratio) -2 -1 0 1 2at 4572.741 kb on + strand, within OH686_22510at 4572.741 kb on + strand, within OH686_22510at 4572.742 kb on - strand, within OH686_22510at 4572.865 kb on - strandat 4572.865 kb on - strandat 4572.865 kb on - strandat 4572.865 kb on - strandat 4572.894 kb on + strandat 4572.895 kb on - strandat 4572.895 kb on - strandat 4572.903 kb on + strandat 4572.904 kb on - strandat 4572.904 kb on - strandat 4572.951 kb on - strandat 4572.953 kb on + strandat 4572.953 kb on + strandat 4572.953 kb on + strandat 4572.953 kb on + strandat 4572.953 kb on + strandat 4572.953 kb on + strandat 4572.954 kb on - strandat 4572.954 kb on - strandat 4572.954 kb on - strandat 4572.954 kb on - strandat 4572.954 kb on - strandat 4572.954 kb on - strandat 4572.954 kb on - strandat 4572.954 kb on - strandat 4572.954 kb on - strandat 4572.954 kb on - strandat 4573.045 kb on + strand, within OH686_22515at 4573.045 kb on + strand, within OH686_22515at 4573.045 kb on + strand, within OH686_22515at 4573.045 kb on + strand, within OH686_22515at 4573.045 kb on + strand, within OH686_22515at 4573.046 kb on - strand, within OH686_22515at 4573.046 kb on - strand, within OH686_22515at 4573.046 kb on - strand, within OH686_22515at 4573.046 kb on - strand, within OH686_22515at 4573.046 kb on - strand, within OH686_22515at 4573.134 kb on + strand, within OH686_22515at 4573.134 kb on + strand, within OH686_22515at 4573.135 kb on - strand, within OH686_22515at 4573.179 kb on + strand, within OH686_22515at 4573.179 kb on + strand, within OH686_22515at 4573.179 kb on + strand, within OH686_22515at 4573.179 kb on + strand, within OH686_22515at 4573.180 kb on - strand, within OH686_22515at 4573.180 kb on - strand, within OH686_22515at 4573.180 kb on - strand, within OH686_22515at 4573.253 kb on + strand, within OH686_22515at 4573.328 kb on - strand, within OH686_22515at 4573.328 kb on - strand, within OH686_22515at 4573.370 kb on + strand, within OH686_22515at 4573.371 kb on - strand, within OH686_22515at 4573.371 kb on - strand, within OH686_22515at 4573.384 kb on + strand, within OH686_22515at 4573.384 kb on + strand, within OH686_22515at 4573.384 kb on + strand, within OH686_22515at 4573.384 kb on + strand, within OH686_22515at 4573.384 kb on + strand, within OH686_22515at 4573.385 kb on - strand, within OH686_22515at 4573.385 kb on - strand, within OH686_22515at 4573.385 kb on - strand, within OH686_22515at 4573.385 kb on - strand, within OH686_22515at 4573.931 kb on - strand, within OH686_22520at 4573.965 kb on + strand, within OH686_22520at 4573.965 kb on + strand, within OH686_22520at 4573.966 kb on - strand, within OH686_22520at 4573.966 kb on - strand, within OH686_22520at 4573.966 kb on - strand, within OH686_22520at 4573.966 kb on - strand, within OH686_22520at 4574.043 kb on + strand, within OH686_22520at 4574.043 kb on + strand, within OH686_22520at 4574.043 kb on + strand, within OH686_22520at 4574.043 kb on + strand, within OH686_22520at 4574.044 kb on - strand, within OH686_22520at 4574.044 kb on - strand, within OH686_22520at 4574.044 kb on - strand, within OH686_22520at 4574.044 kb on - strand, within OH686_22520at 4574.230 kb on + strand, within OH686_22520at 4574.230 kb on + strand, within OH686_22520at 4574.231 kb on - strand, within OH686_22520at 4574.658 kb on + strandat 4574.658 kb on + strandat 4574.658 kb on + strandat 4574.658 kb on + strandat 4574.658 kb on + strandat 4574.658 kb on + strandat 4574.659 kb on - strandat 4574.659 kb on - strandat 4574.659 kb on - strandat 4574.659 kb on - strandat 4574.659 kb on - strandat 4574.681 kb on + strandat 4574.681 kb on + strandat 4574.699 kb on + strandat 4574.699 kb on + strandat 4574.699 kb on + strandat 4574.699 kb on + strandat 4574.699 kb on + strandat 4574.699 kb on + strandat 4574.699 kb on + strandat 4574.699 kb on + strandat 4574.699 kb on + strandat 4574.699 kb on + strandat 4574.699 kb on + strandat 4574.699 kb on + strandat 4574.699 kb on + strandat 4574.699 kb on + strandat 4574.699 kb on + strandat 4574.699 kb on + strandat 4574.699 kb on + strandat 4574.699 kb on + strandat 4574.699 kb on + strandat 4574.699 kb on + strandat 4574.700 kb on - strandat 4574.700 kb on - strandat 4574.700 kb on - strandat 4574.700 kb on - strandat 4574.700 kb on - strandat 4574.700 kb on - strandat 4574.700 kb on - strandat 4574.700 kb on - strandat 4574.700 kb on - strandat 4574.700 kb on - strandat 4574.700 kb on - strandat 4574.700 kb on - strandat 4574.700 kb on - strandat 4574.700 kb on - strandat 4574.700 kb on - strandat 4574.700 kb on - strandat 4574.700 kb on - strandat 4574.700 kb on - strandat 4574.702 kb on + strandat 4574.702 kb on + strandat 4574.702 kb on + strandat 4574.702 kb on + strandat 4574.703 kb on - strandat 4574.703 kb on - strandat 4574.703 kb on - strandat 4574.727 kb on - strand, within OH686_22525at 4574.933 kb on + strand, within OH686_22525at 4574.933 kb on + strand, within OH686_22525at 4574.933 kb on + strand, within OH686_22525at 4574.933 kb on + strand, within OH686_22525at 4574.933 kb on + strand, within OH686_22525at 4574.933 kb on + strand, within OH686_22525at 4574.934 kb on - strand, within OH686_22525at 4574.934 kb on - strand, within OH686_22525at 4574.993 kb on + strand, within OH686_22525at 4574.993 kb on + strand, within OH686_22525at 4575.032 kb on + strand, within OH686_22525at 4575.032 kb on + strand, within OH686_22525at 4575.033 kb on - strand, within OH686_22525at 4575.033 kb on - strand, within OH686_22525at 4575.087 kb on + strand, within OH686_22525at 4575.161 kb on + strand, within OH686_22525at 4575.161 kb on + strand, within OH686_22525at 4575.162 kb on - strand, within OH686_22525at 4575.162 kb on - strand, within OH686_22525at 4575.162 kb on - strand, within OH686_22525at 4575.162 kb on - strand, within OH686_22525at 4575.162 kb on - strand, within OH686_22525at 4575.171 kb on - strand, within OH686_22525at 4575.191 kb on + strand, within OH686_22525at 4575.191 kb on + strand, within OH686_22525at 4575.238 kb on + strand, within OH686_22525at 4575.239 kb on - strand, within OH686_22525at 4575.239 kb on - strand, within OH686_22525at 4575.239 kb on - strand, within OH686_22525at 4575.282 kb on + strand, within OH686_22525at 4575.449 kb on + strand, within OH686_22525at 4575.449 kb on + strand, within OH686_22525at 4575.450 kb on - strand, within OH686_22525at 4575.450 kb on - strand, within OH686_22525at 4575.450 kb on - strand, within OH686_22525

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Per-strain Table

Position Strand Gene LocusTag Fraction Trisodium citrate (C)
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4,572,741 + OH686_22510 0.77 -0.9
4,572,741 + OH686_22510 0.77 -0.7
4,572,742 - OH686_22510 0.77 -0.8
4,572,865 - -0.1
4,572,865 - +0.2
4,572,865 - -0.8
4,572,865 - -0.4
4,572,894 + -0.5
4,572,895 - +0.1
4,572,895 - +0.1
4,572,903 + -0.5
4,572,904 - -0.2
4,572,904 - +0.6
4,572,951 - +0.3
4,572,953 + +0.6
4,572,953 + +0.8
4,572,953 + +0.1
4,572,953 + +0.3
4,572,953 + -0.5
4,572,953 + +0.2
4,572,954 - -1.1
4,572,954 - +0.8
4,572,954 - -0.2
4,572,954 - +0.8
4,572,954 - +0.8
4,572,954 - -0.2
4,572,954 - +0.7
4,572,954 - +0.2
4,572,954 - +0.1
4,572,954 - -0.9
4,573,045 + OH686_22515 0.17 +0.1
4,573,045 + OH686_22515 0.17 +0.1
4,573,045 + OH686_22515 0.17 -0.5
4,573,045 + OH686_22515 0.17 -0.5
4,573,045 + OH686_22515 0.17 -0.7
4,573,046 - OH686_22515 0.17 +0.7
4,573,046 - OH686_22515 0.17 -0.2
4,573,046 - OH686_22515 0.17 -0.7
4,573,046 - OH686_22515 0.17 +0.8
4,573,046 - OH686_22515 0.17 +0.8
4,573,134 + OH686_22515 0.29 +0.5
4,573,134 + OH686_22515 0.29 -0.4
4,573,135 - OH686_22515 0.29 +0.0
4,573,179 + OH686_22515 0.34 +0.6
4,573,179 + OH686_22515 0.34 +0.1
4,573,179 + OH686_22515 0.34 +0.5
4,573,179 + OH686_22515 0.34 -1.2
4,573,180 - OH686_22515 0.34 -0.6
4,573,180 - OH686_22515 0.34 -0.2
4,573,180 - OH686_22515 0.34 -0.7
4,573,253 + OH686_22515 0.44 -0.0
4,573,328 - OH686_22515 0.53 -1.0
4,573,328 - OH686_22515 0.53 +0.2
4,573,370 + OH686_22515 0.59 +0.8
4,573,371 - OH686_22515 0.59 -0.2
4,573,371 - OH686_22515 0.59 -0.0
4,573,384 + OH686_22515 0.61 -0.7
4,573,384 + OH686_22515 0.61 +0.1
4,573,384 + OH686_22515 0.61 -0.2
4,573,384 + OH686_22515 0.61 -0.2
4,573,384 + OH686_22515 0.61 -0.6
4,573,385 - OH686_22515 0.61 -2.7
4,573,385 - OH686_22515 0.61 -0.8
4,573,385 - OH686_22515 0.61 +0.3
4,573,385 - OH686_22515 0.61 -0.3
4,573,931 - OH686_22520 0.26 -1.2
4,573,965 + OH686_22520 0.30 +0.4
4,573,965 + OH686_22520 0.30 -1.7
4,573,966 - OH686_22520 0.30 +0.3
4,573,966 - OH686_22520 0.30 -0.3
4,573,966 - OH686_22520 0.30 -0.0
4,573,966 - OH686_22520 0.30 +0.4
4,574,043 + OH686_22520 0.39 +0.9
4,574,043 + OH686_22520 0.39 +0.0
4,574,043 + OH686_22520 0.39 -1.9
4,574,043 + OH686_22520 0.39 -0.3
4,574,044 - OH686_22520 0.39 +0.5
4,574,044 - OH686_22520 0.39 +0.5
4,574,044 - OH686_22520 0.39 +0.4
4,574,044 - OH686_22520 0.39 +0.2
4,574,230 + OH686_22520 0.59 +0.6
4,574,230 + OH686_22520 0.59 +0.8
4,574,231 - OH686_22520 0.59 -0.2
4,574,658 + +1.0
4,574,658 + +0.6
4,574,658 + -0.1
4,574,658 + -1.0
4,574,658 + +0.0
4,574,658 + -0.6
4,574,659 - -0.9
4,574,659 - -0.3
4,574,659 - +0.3
4,574,659 - +0.1
4,574,659 - +0.5
4,574,681 + -0.4
4,574,681 + -1.1
4,574,699 + +0.4
4,574,699 + -1.3
4,574,699 + +0.2
4,574,699 + +0.4
4,574,699 + +0.2
4,574,699 + +0.5
4,574,699 + -0.7
4,574,699 + -0.2
4,574,699 + -0.1
4,574,699 + +0.7
4,574,699 + -0.1
4,574,699 + +0.1
4,574,699 + +0.3
4,574,699 + -0.5
4,574,699 + +0.3
4,574,699 + +0.5
4,574,699 + -0.2
4,574,699 + -0.2
4,574,699 + +0.5
4,574,699 + +0.0
4,574,700 - -0.4
4,574,700 - +0.1
4,574,700 - +0.2
4,574,700 - +0.4
4,574,700 - -0.9
4,574,700 - +0.6
4,574,700 - -0.3
4,574,700 - -0.1
4,574,700 - +0.4
4,574,700 - -0.5
4,574,700 - -0.5
4,574,700 - +0.2
4,574,700 - -0.1
4,574,700 - +0.3
4,574,700 - +1.0
4,574,700 - -0.0
4,574,700 - +0.7
4,574,700 - -0.3
4,574,702 + -1.1
4,574,702 + +0.3
4,574,702 + -0.2
4,574,702 + -0.0
4,574,703 - +1.1
4,574,703 - +0.4
4,574,703 - -0.8
4,574,727 - OH686_22525 0.10 -0.1
4,574,933 + OH686_22525 0.25 -0.3
4,574,933 + OH686_22525 0.25 +0.3
4,574,933 + OH686_22525 0.25 +0.9
4,574,933 + OH686_22525 0.25 -0.5
4,574,933 + OH686_22525 0.25 -1.1
4,574,933 + OH686_22525 0.25 -1.0
4,574,934 - OH686_22525 0.25 -0.5
4,574,934 - OH686_22525 0.25 -0.2
4,574,993 + OH686_22525 0.29 -0.1
4,574,993 + OH686_22525 0.29 +0.7
4,575,032 + OH686_22525 0.32 +0.6
4,575,032 + OH686_22525 0.32 -0.5
4,575,033 - OH686_22525 0.32 +0.2
4,575,033 - OH686_22525 0.32 -0.5
4,575,087 + OH686_22525 0.36 +0.0
4,575,161 + OH686_22525 0.42 +0.6
4,575,161 + OH686_22525 0.42 -0.3
4,575,162 - OH686_22525 0.42 -0.6
4,575,162 - OH686_22525 0.42 -0.0
4,575,162 - OH686_22525 0.42 -0.5
4,575,162 - OH686_22525 0.42 +0.6
4,575,162 - OH686_22525 0.42 +0.2
4,575,171 - OH686_22525 0.42 -0.7
4,575,191 + OH686_22525 0.44 -0.7
4,575,191 + OH686_22525 0.44 -0.4
4,575,238 + OH686_22525 0.47 -1.5
4,575,239 - OH686_22525 0.47 +0.1
4,575,239 - OH686_22525 0.47 -0.5
4,575,239 - OH686_22525 0.47 -0.6
4,575,282 + OH686_22525 0.50 +0.7
4,575,449 + OH686_22525 0.63 -0.8
4,575,449 + OH686_22525 0.63 -0.5
4,575,450 - OH686_22525 0.63 +0.8
4,575,450 - OH686_22525 0.63 +0.3
4,575,450 - OH686_22525 0.63 +1.8

Or see this region's nucleotide sequence