Strain Fitness in Pseudomonas sp. S08-1 around OH686_21835

Experiment: Trisodium citrate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOH686_21825 and OH686_21830 overlap by 4 nucleotidesOH686_21830 and OH686_21835 overlap by 33 nucleotidesOH686_21835 and OH686_21840 are separated by 75 nucleotides OH686_21825: OH686_21825 - lipid kinase YegS, at 4,445,425 to 4,446,324 _21825 OH686_21830: OH686_21830 - Two-component transcriptional response regulator, NarL/FixJ family, at 4,446,321 to 4,446,965 _21830 OH686_21835: OH686_21835 - CDS, at 4,446,933 to 4,447,079 _21835 OH686_21840: OH686_21840 - Chemotaxis response regulator protein-glutamate methylesterase CheB , at 4,447,155 to 4,448,228 _21840 Position (kb) 4446 4447 4448Strain fitness (log2 ratio) -2 -1 0 1at 4446.075 kb on + strand, within OH686_21825at 4446.076 kb on - strand, within OH686_21825at 4446.076 kb on - strand, within OH686_21825at 4446.112 kb on - strand, within OH686_21825at 4446.297 kb on + strandat 4446.297 kb on + strandat 4446.358 kb on + strandat 4446.358 kb on + strandat 4446.358 kb on + strandat 4446.358 kb on + strandat 4446.358 kb on + strandat 4446.358 kb on + strandat 4446.358 kb on + strandat 4446.358 kb on + strandat 4446.358 kb on + strandat 4446.358 kb on + strandat 4446.358 kb on + strandat 4446.358 kb on + strandat 4446.358 kb on + strandat 4446.359 kb on - strandat 4446.359 kb on - strandat 4446.359 kb on - strandat 4446.359 kb on - strandat 4446.359 kb on - strandat 4446.483 kb on - strand, within OH686_21830at 4446.483 kb on - strand, within OH686_21830at 4446.483 kb on - strand, within OH686_21830at 4446.593 kb on - strand, within OH686_21830at 4446.593 kb on - strand, within OH686_21830at 4446.661 kb on + strand, within OH686_21830at 4446.661 kb on + strand, within OH686_21830at 4446.661 kb on + strand, within OH686_21830at 4446.661 kb on + strand, within OH686_21830at 4446.661 kb on + strand, within OH686_21830at 4446.661 kb on + strand, within OH686_21830at 4446.661 kb on + strand, within OH686_21830at 4446.662 kb on - strand, within OH686_21830at 4446.693 kb on + strand, within OH686_21830at 4446.693 kb on + strand, within OH686_21830at 4446.694 kb on - strand, within OH686_21830at 4446.694 kb on - strand, within OH686_21830at 4447.077 kb on + strandat 4447.078 kb on - strandat 4447.078 kb on - strandat 4447.078 kb on - strandat 4447.078 kb on - strandat 4447.078 kb on - strandat 4447.078 kb on - strandat 4447.078 kb on - strandat 4447.078 kb on - strandat 4447.078 kb on - strandat 4447.078 kb on - strandat 4447.090 kb on + strandat 4447.091 kb on - strandat 4447.091 kb on - strandat 4447.105 kb on + strandat 4447.105 kb on + strandat 4447.105 kb on + strandat 4447.105 kb on + strandat 4447.106 kb on - strandat 4447.106 kb on - strandat 4447.106 kb on - strandat 4447.109 kb on + strandat 4447.110 kb on - strandat 4447.110 kb on - strandat 4447.110 kb on - strandat 4447.150 kb on + strandat 4447.150 kb on + strandat 4447.150 kb on + strandat 4447.150 kb on + strandat 4447.150 kb on + strandat 4447.150 kb on + strandat 4447.151 kb on - strandat 4447.151 kb on - strandat 4447.151 kb on - strandat 4447.151 kb on - strandat 4447.151 kb on - strandat 4447.401 kb on + strand, within OH686_21840at 4447.401 kb on + strand, within OH686_21840at 4447.401 kb on + strand, within OH686_21840at 4447.401 kb on + strand, within OH686_21840at 4447.401 kb on + strand, within OH686_21840at 4447.401 kb on + strand, within OH686_21840at 4447.401 kb on + strand, within OH686_21840at 4447.401 kb on + strand, within OH686_21840at 4447.401 kb on + strand, within OH686_21840at 4447.401 kb on + strand, within OH686_21840at 4447.401 kb on + strand, within OH686_21840at 4447.401 kb on + strand, within OH686_21840at 4447.402 kb on - strand, within OH686_21840at 4447.402 kb on - strand, within OH686_21840at 4447.402 kb on - strand, within OH686_21840at 4447.402 kb on - strand, within OH686_21840at 4447.402 kb on - strand, within OH686_21840at 4447.402 kb on - strand, within OH686_21840at 4447.402 kb on - strand, within OH686_21840at 4447.402 kb on - strand, within OH686_21840at 4447.402 kb on - strand, within OH686_21840at 4447.402 kb on - strand, within OH686_21840at 4447.402 kb on - strand, within OH686_21840at 4447.402 kb on - strand, within OH686_21840at 4447.402 kb on - strand, within OH686_21840at 4447.459 kb on + strand, within OH686_21840at 4447.459 kb on + strand, within OH686_21840at 4447.459 kb on + strand, within OH686_21840at 4447.459 kb on + strand, within OH686_21840at 4447.460 kb on - strand, within OH686_21840at 4447.460 kb on - strand, within OH686_21840at 4447.460 kb on - strand, within OH686_21840at 4447.460 kb on - strand, within OH686_21840at 4447.507 kb on - strand, within OH686_21840at 4447.961 kb on + strand, within OH686_21840at 4448.006 kb on + strand, within OH686_21840at 4448.007 kb on - strand, within OH686_21840at 4448.079 kb on + strand, within OH686_21840at 4448.079 kb on + strand, within OH686_21840at 4448.079 kb on + strand, within OH686_21840at 4448.079 kb on + strand, within OH686_21840

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Per-strain Table

Position Strand Gene LocusTag Fraction Trisodium citrate (C)
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4,446,075 + OH686_21825 0.72 -0.0
4,446,076 - OH686_21825 0.72 +0.9
4,446,076 - OH686_21825 0.72 +0.6
4,446,112 - OH686_21825 0.76 -0.3
4,446,297 + -0.8
4,446,297 + +0.7
4,446,358 + +0.6
4,446,358 + +0.8
4,446,358 + -0.3
4,446,358 + +0.2
4,446,358 + +1.1
4,446,358 + +0.8
4,446,358 + +0.1
4,446,358 + -1.3
4,446,358 + -0.1
4,446,358 + +0.8
4,446,358 + +0.8
4,446,358 + -0.1
4,446,358 + -0.6
4,446,359 - -0.2
4,446,359 - -0.8
4,446,359 - +0.7
4,446,359 - +0.1
4,446,359 - +0.1
4,446,483 - OH686_21830 0.25 +0.1
4,446,483 - OH686_21830 0.25 -0.2
4,446,483 - OH686_21830 0.25 +0.7
4,446,593 - OH686_21830 0.42 +0.4
4,446,593 - OH686_21830 0.42 -0.5
4,446,661 + OH686_21830 0.53 +0.3
4,446,661 + OH686_21830 0.53 -1.6
4,446,661 + OH686_21830 0.53 +0.2
4,446,661 + OH686_21830 0.53 +0.5
4,446,661 + OH686_21830 0.53 -0.4
4,446,661 + OH686_21830 0.53 +0.0
4,446,661 + OH686_21830 0.53 +0.2
4,446,662 - OH686_21830 0.53 -0.4
4,446,693 + OH686_21830 0.58 -0.2
4,446,693 + OH686_21830 0.58 -0.3
4,446,694 - OH686_21830 0.58 -0.7
4,446,694 - OH686_21830 0.58 +0.8
4,447,077 + +0.5
4,447,078 - -0.3
4,447,078 - -0.3
4,447,078 - -1.9
4,447,078 - -0.5
4,447,078 - -0.7
4,447,078 - +0.0
4,447,078 - +0.4
4,447,078 - -1.0
4,447,078 - -0.3
4,447,078 - -0.1
4,447,090 + -0.3
4,447,091 - -0.2
4,447,091 - -0.2
4,447,105 + -0.2
4,447,105 + -0.3
4,447,105 + -0.5
4,447,105 + -0.1
4,447,106 - -1.2
4,447,106 - +0.6
4,447,106 - +0.1
4,447,109 + +0.4
4,447,110 - -0.4
4,447,110 - +0.8
4,447,110 - +0.2
4,447,150 + -2.3
4,447,150 + +1.2
4,447,150 + -1.3
4,447,150 + -0.3
4,447,150 + -0.0
4,447,150 + +0.5
4,447,151 - -0.5
4,447,151 - +0.4
4,447,151 - +0.1
4,447,151 - -0.8
4,447,151 - -0.2
4,447,401 + OH686_21840 0.23 +0.5
4,447,401 + OH686_21840 0.23 -1.4
4,447,401 + OH686_21840 0.23 -0.9
4,447,401 + OH686_21840 0.23 +0.0
4,447,401 + OH686_21840 0.23 -0.0
4,447,401 + OH686_21840 0.23 -0.9
4,447,401 + OH686_21840 0.23 -0.4
4,447,401 + OH686_21840 0.23 -0.4
4,447,401 + OH686_21840 0.23 -0.1
4,447,401 + OH686_21840 0.23 -0.1
4,447,401 + OH686_21840 0.23 -0.0
4,447,401 + OH686_21840 0.23 +0.2
4,447,402 - OH686_21840 0.23 -0.0
4,447,402 - OH686_21840 0.23 +0.2
4,447,402 - OH686_21840 0.23 -1.1
4,447,402 - OH686_21840 0.23 +0.3
4,447,402 - OH686_21840 0.23 +0.4
4,447,402 - OH686_21840 0.23 -1.0
4,447,402 - OH686_21840 0.23 +1.3
4,447,402 - OH686_21840 0.23 +0.2
4,447,402 - OH686_21840 0.23 -0.6
4,447,402 - OH686_21840 0.23 +0.2
4,447,402 - OH686_21840 0.23 +0.4
4,447,402 - OH686_21840 0.23 -0.6
4,447,402 - OH686_21840 0.23 +1.4
4,447,459 + OH686_21840 0.28 -0.2
4,447,459 + OH686_21840 0.28 +0.6
4,447,459 + OH686_21840 0.28 -0.4
4,447,459 + OH686_21840 0.28 +0.2
4,447,460 - OH686_21840 0.28 +0.8
4,447,460 - OH686_21840 0.28 -0.3
4,447,460 - OH686_21840 0.28 +0.6
4,447,460 - OH686_21840 0.28 -2.0
4,447,507 - OH686_21840 0.33 -0.2
4,447,961 + OH686_21840 0.75 +0.3
4,448,006 + OH686_21840 0.79 -0.2
4,448,007 - OH686_21840 0.79 +0.3
4,448,079 + OH686_21840 0.86 +0.1
4,448,079 + OH686_21840 0.86 -1.3
4,448,079 + OH686_21840 0.86 +0.1
4,448,079 + OH686_21840 0.86 -0.7

Or see this region's nucleotide sequence