Experiment: Trisodium citrate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt OH686_21555 and OH686_21560 overlap by 4 nucleotides OH686_21560 and OH686_21565 overlap by 8 nucleotides OH686_21565 and OH686_21570 overlap by 1 nucleotides OH686_21570 and OH686_21575 are separated by 78 nucleotides OH686_21575 and OH686_21580 overlap by 4 nucleotides OH686_21580 and OH686_21585 are separated by 109 nucleotides
OH686_21555: OH686_21555 - CDS, at 4,396,205 to 4,396,366
_21555
OH686_21560: OH686_21560 - hypothetical protein, at 4,396,363 to 4,396,713
_21560
OH686_21565: OH686_21565 - Phage protein, at 4,396,706 to 4,397,263
_21565
OH686_21570: OH686_21570 - Phage recombination protein NinG, at 4,397,263 to 4,397,868
_21570
OH686_21575: OH686_21575 - hypothetical protein, at 4,397,947 to 4,398,420
_21575
OH686_21580: OH686_21580 - hypothetical protein, at 4,398,417 to 4,398,698
_21580
OH686_21585: OH686_21585 - hypothetical protein, at 4,398,808 to 4,399,266
_21585
Position (kb) 4397
4398 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 4396.529 kb on - strand, within OH686_21560 at 4396.529 kb on - strand, within OH686_21560 at 4396.529 kb on - strand, within OH686_21560 at 4396.529 kb on - strand, within OH686_21560 at 4396.705 kb on - strand at 4396.787 kb on + strand, within OH686_21565 at 4396.787 kb on + strand, within OH686_21565 at 4396.787 kb on + strand, within OH686_21565 at 4396.787 kb on + strand, within OH686_21565 at 4396.788 kb on - strand, within OH686_21565 at 4396.788 kb on - strand, within OH686_21565 at 4396.788 kb on - strand, within OH686_21565 at 4396.788 kb on - strand, within OH686_21565 at 4396.831 kb on - strand, within OH686_21565 at 4396.831 kb on - strand, within OH686_21565 at 4396.831 kb on - strand, within OH686_21565 at 4396.831 kb on - strand, within OH686_21565 at 4396.831 kb on - strand, within OH686_21565 at 4396.831 kb on - strand, within OH686_21565 at 4396.831 kb on - strand, within OH686_21565 at 4396.876 kb on + strand, within OH686_21565 at 4396.876 kb on + strand, within OH686_21565 at 4396.877 kb on - strand, within OH686_21565 at 4396.939 kb on + strand, within OH686_21565 at 4396.940 kb on - strand, within OH686_21565 at 4397.196 kb on - strand, within OH686_21565 at 4397.196 kb on - strand, within OH686_21565 at 4397.196 kb on - strand, within OH686_21565 at 4397.196 kb on - strand, within OH686_21565 at 4397.196 kb on - strand, within OH686_21565 at 4397.196 kb on - strand, within OH686_21565 at 4397.196 kb on - strand, within OH686_21565 at 4397.591 kb on - strand, within OH686_21570 at 4397.591 kb on - strand, within OH686_21570 at 4397.591 kb on - strand, within OH686_21570 at 4397.859 kb on - strand at 4397.859 kb on - strand at 4397.979 kb on - strand at 4397.979 kb on - strand at 4397.979 kb on - strand at 4398.128 kb on - strand, within OH686_21575 at 4398.164 kb on + strand, within OH686_21575 at 4398.165 kb on - strand, within OH686_21575 at 4398.181 kb on - strand, within OH686_21575 at 4398.181 kb on - strand, within OH686_21575 at 4398.206 kb on + strand, within OH686_21575 at 4398.206 kb on + strand, within OH686_21575 at 4398.207 kb on - strand, within OH686_21575 at 4398.207 kb on - strand, within OH686_21575 at 4398.207 kb on - strand, within OH686_21575 at 4398.231 kb on + strand, within OH686_21575 at 4398.231 kb on + strand, within OH686_21575 at 4398.653 kb on - strand, within OH686_21580 at 4398.736 kb on + strand at 4398.736 kb on + strand at 4398.786 kb on + strand at 4398.786 kb on + strand at 4398.787 kb on - strand at 4398.787 kb on - strand at 4398.845 kb on + strand at 4398.845 kb on + strand at 4398.845 kb on + strand at 4398.845 kb on + strand at 4398.845 kb on + strand at 4398.846 kb on - strand at 4398.846 kb on - strand at 4398.846 kb on - strand at 4398.857 kb on + strand, within OH686_21585 at 4398.857 kb on + strand, within OH686_21585 at 4398.857 kb on + strand, within OH686_21585 at 4398.858 kb on - strand, within OH686_21585 at 4398.858 kb on - strand, within OH686_21585
Per-strain Table
Position Strand Gene LocusTag Fraction Trisodium citrate (C) remove 4,396,529 - OH686_21560 0.47 -0.9 4,396,529 - OH686_21560 0.47 -0.6 4,396,529 - OH686_21560 0.47 -0.3 4,396,529 - OH686_21560 0.47 +0.7 4,396,705 - +0.8 4,396,787 + OH686_21565 0.15 -0.0 4,396,787 + OH686_21565 0.15 -2.0 4,396,787 + OH686_21565 0.15 -1.2 4,396,787 + OH686_21565 0.15 -1.3 4,396,788 - OH686_21565 0.15 -0.4 4,396,788 - OH686_21565 0.15 +0.7 4,396,788 - OH686_21565 0.15 +0.2 4,396,788 - OH686_21565 0.15 -0.1 4,396,831 - OH686_21565 0.22 +0.4 4,396,831 - OH686_21565 0.22 -0.5 4,396,831 - OH686_21565 0.22 +1.5 4,396,831 - OH686_21565 0.22 -0.4 4,396,831 - OH686_21565 0.22 +1.5 4,396,831 - OH686_21565 0.22 +0.3 4,396,831 - OH686_21565 0.22 -0.6 4,396,876 + OH686_21565 0.30 +0.4 4,396,876 + OH686_21565 0.30 +0.4 4,396,877 - OH686_21565 0.31 -0.5 4,396,939 + OH686_21565 0.42 -1.3 4,396,940 - OH686_21565 0.42 -1.5 4,397,196 - OH686_21565 0.88 +0.2 4,397,196 - OH686_21565 0.88 -0.0 4,397,196 - OH686_21565 0.88 +0.4 4,397,196 - OH686_21565 0.88 +0.8 4,397,196 - OH686_21565 0.88 -0.4 4,397,196 - OH686_21565 0.88 +0.2 4,397,196 - OH686_21565 0.88 -0.1 4,397,591 - OH686_21570 0.54 -2.3 4,397,591 - OH686_21570 0.54 -1.0 4,397,591 - OH686_21570 0.54 -1.1 4,397,859 - -0.2 4,397,859 - +0.6 4,397,979 - -0.5 4,397,979 - +0.5 4,397,979 - +0.1 4,398,128 - OH686_21575 0.38 +0.3 4,398,164 + OH686_21575 0.46 +0.2 4,398,165 - OH686_21575 0.46 +0.1 4,398,181 - OH686_21575 0.49 -0.8 4,398,181 - OH686_21575 0.49 +0.0 4,398,206 + OH686_21575 0.55 +2.0 4,398,206 + OH686_21575 0.55 +0.2 4,398,207 - OH686_21575 0.55 -0.2 4,398,207 - OH686_21575 0.55 +0.1 4,398,207 - OH686_21575 0.55 +0.1 4,398,231 + OH686_21575 0.60 -0.2 4,398,231 + OH686_21575 0.60 +0.4 4,398,653 - OH686_21580 0.84 -0.7 4,398,736 + -1.3 4,398,736 + -1.3 4,398,786 + -3.7 4,398,786 + -1.5 4,398,787 - +0.5 4,398,787 - +0.5 4,398,845 + -1.8 4,398,845 + -0.6 4,398,845 + -1.9 4,398,845 + -1.5 4,398,845 + -1.0 4,398,846 - -1.0 4,398,846 - +0.6 4,398,846 - +0.4 4,398,857 + OH686_21585 0.11 -1.3 4,398,857 + OH686_21585 0.11 -2.3 4,398,857 + OH686_21585 0.11 -1.3 4,398,858 - OH686_21585 0.11 -0.2 4,398,858 - OH686_21585 0.11 +0.3
Or see this region's nucleotide sequence