Strain Fitness in Pseudomonas sp. S08-1 around OH686_20860

Experiment: Trisodium citrate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOH686_20855 and OH686_20860 are separated by 223 nucleotidesOH686_20860 and OH686_20865 are separated by 7 nucleotides OH686_20855: OH686_20855 - S-methyl-5-thioribose-1-phosphate isomerase, at 4,261,342 to 4,262,418 _20855 OH686_20860: OH686_20860 - DNA gyrase, A subunit, at 4,262,642 to 4,265,416 _20860 OH686_20865: OH686_20865 - phosphoserine transaminase, at 4,265,424 to 4,266,509 _20865 Position (kb) 4262 4263 4264 4265 4266Strain fitness (log2 ratio) -1 0 1at 4262.066 kb on + strand, within OH686_20855at 4262.066 kb on + strand, within OH686_20855at 4262.067 kb on - strand, within OH686_20855at 4262.067 kb on - strand, within OH686_20855at 4262.122 kb on + strand, within OH686_20855at 4262.122 kb on + strand, within OH686_20855at 4262.122 kb on + strand, within OH686_20855at 4262.122 kb on + strand, within OH686_20855at 4262.123 kb on - strand, within OH686_20855at 4262.123 kb on - strand, within OH686_20855at 4262.123 kb on - strand, within OH686_20855at 4262.468 kb on + strandat 4262.468 kb on + strandat 4262.521 kb on + strandat 4262.530 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Trisodium citrate (C)
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4,262,066 + OH686_20855 0.67 -0.6
4,262,066 + OH686_20855 0.67 -1.0
4,262,067 - OH686_20855 0.67 -0.3
4,262,067 - OH686_20855 0.67 -0.4
4,262,122 + OH686_20855 0.72 -1.2
4,262,122 + OH686_20855 0.72 +0.6
4,262,122 + OH686_20855 0.72 +0.5
4,262,122 + OH686_20855 0.72 +0.3
4,262,123 - OH686_20855 0.73 -0.4
4,262,123 - OH686_20855 0.73 -0.6
4,262,123 - OH686_20855 0.73 -1.2
4,262,468 + +0.8
4,262,468 + -0.2
4,262,521 + -1.0
4,262,530 + -0.4

Or see this region's nucleotide sequence