Experiment: Trisodium citrate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt OH686_16620 and OH686_16625 are separated by 3 nucleotides OH686_16625 and OH686_16630 are separated by 7 nucleotides
OH686_16620: OH686_16620 - ATP-dependent RNA helicase, at 3,475,984 to 3,477,333
_16620
OH686_16625: OH686_16625 - diguanylate cyclase (GGDEF domain) with PAS/PAC sensor, at 3,477,337 to 3,477,780
_16625
OH686_16630: OH686_16630 - Chemotaxis protein CheC -- inhibitor of MCP methylation, at 3,477,788 to 3,478,786
_16630
Position (kb)
3477
3478 Strain fitness (log2 ratio)
-1
0
1 at 3476.398 kb on + strand, within OH686_16620 at 3476.698 kb on + strand, within OH686_16620 at 3476.699 kb on - strand, within OH686_16620 at 3476.965 kb on + strand, within OH686_16620 at 3476.965 kb on + strand, within OH686_16620 at 3476.965 kb on + strand, within OH686_16620 at 3476.965 kb on + strand, within OH686_16620 at 3476.965 kb on + strand, within OH686_16620 at 3476.965 kb on + strand, within OH686_16620 at 3476.965 kb on + strand, within OH686_16620 at 3476.965 kb on + strand, within OH686_16620 at 3476.965 kb on + strand, within OH686_16620 at 3476.965 kb on + strand, within OH686_16620 at 3476.965 kb on + strand, within OH686_16620 at 3476.966 kb on - strand, within OH686_16620 at 3476.966 kb on - strand, within OH686_16620 at 3476.966 kb on - strand, within OH686_16620 at 3476.966 kb on - strand, within OH686_16620 at 3476.966 kb on - strand, within OH686_16620 at 3476.966 kb on - strand, within OH686_16620 at 3476.966 kb on - strand, within OH686_16620 at 3476.966 kb on - strand, within OH686_16620 at 3476.966 kb on - strand, within OH686_16620 at 3476.966 kb on - strand, within OH686_16620 at 3476.966 kb on - strand, within OH686_16620 at 3476.966 kb on - strand, within OH686_16620 at 3476.966 kb on - strand, within OH686_16620 at 3477.153 kb on - strand, within OH686_16620 at 3477.380 kb on + strand at 3477.380 kb on + strand at 3477.380 kb on + strand at 3477.380 kb on + strand at 3477.380 kb on + strand at 3477.381 kb on - strand at 3477.381 kb on - strand at 3477.381 kb on - strand at 3477.381 kb on - strand at 3477.394 kb on + strand, within OH686_16625 at 3477.394 kb on + strand, within OH686_16625 at 3477.394 kb on + strand, within OH686_16625 at 3477.394 kb on + strand, within OH686_16625 at 3477.394 kb on + strand, within OH686_16625 at 3477.394 kb on + strand, within OH686_16625 at 3477.394 kb on + strand, within OH686_16625 at 3477.394 kb on + strand, within OH686_16625 at 3477.394 kb on + strand, within OH686_16625 at 3477.394 kb on + strand, within OH686_16625 at 3477.394 kb on + strand, within OH686_16625 at 3477.394 kb on + strand, within OH686_16625 at 3477.394 kb on + strand, within OH686_16625 at 3477.394 kb on + strand, within OH686_16625 at 3477.394 kb on + strand, within OH686_16625 at 3477.394 kb on + strand, within OH686_16625 at 3477.394 kb on + strand, within OH686_16625 at 3477.394 kb on + strand, within OH686_16625 at 3477.395 kb on - strand, within OH686_16625 at 3477.395 kb on - strand, within OH686_16625 at 3477.395 kb on - strand, within OH686_16625 at 3477.395 kb on - strand, within OH686_16625 at 3477.395 kb on - strand, within OH686_16625 at 3477.395 kb on - strand, within OH686_16625 at 3477.395 kb on - strand, within OH686_16625 at 3477.395 kb on - strand, within OH686_16625 at 3477.395 kb on - strand, within OH686_16625 at 3477.449 kb on + strand, within OH686_16625 at 3477.449 kb on + strand, within OH686_16625 at 3477.449 kb on + strand, within OH686_16625 at 3477.449 kb on + strand, within OH686_16625 at 3477.450 kb on - strand, within OH686_16625 at 3477.450 kb on - strand, within OH686_16625 at 3477.503 kb on + strand, within OH686_16625 at 3477.503 kb on + strand, within OH686_16625 at 3477.504 kb on - strand, within OH686_16625 at 3477.801 kb on + strand at 3477.801 kb on + strand at 3477.801 kb on + strand at 3477.802 kb on - strand at 3477.802 kb on - strand at 3477.888 kb on + strand, within OH686_16630 at 3477.888 kb on + strand, within OH686_16630 at 3477.889 kb on - strand, within OH686_16630 at 3477.889 kb on - strand, within OH686_16630 at 3477.889 kb on - strand, within OH686_16630 at 3477.889 kb on - strand, within OH686_16630 at 3477.889 kb on - strand, within OH686_16630 at 3478.444 kb on + strand, within OH686_16630 at 3478.444 kb on + strand, within OH686_16630 at 3478.593 kb on - strand, within OH686_16630 at 3478.625 kb on + strand, within OH686_16630 at 3478.625 kb on + strand, within OH686_16630 at 3478.625 kb on + strand, within OH686_16630 at 3478.625 kb on + strand, within OH686_16630 at 3478.625 kb on + strand, within OH686_16630 at 3478.625 kb on + strand, within OH686_16630 at 3478.625 kb on + strand, within OH686_16630 at 3478.625 kb on + strand, within OH686_16630 at 3478.626 kb on - strand, within OH686_16630 at 3478.626 kb on - strand, within OH686_16630 at 3478.626 kb on - strand, within OH686_16630 at 3478.626 kb on - strand, within OH686_16630 at 3478.626 kb on - strand, within OH686_16630 at 3478.700 kb on - strand at 3478.735 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Trisodium citrate (C) remove 3,476,398 + OH686_16620 0.31 +0.4 3,476,698 + OH686_16620 0.53 +0.8 3,476,699 - OH686_16620 0.53 +1.3 3,476,965 + OH686_16620 0.73 -0.2 3,476,965 + OH686_16620 0.73 +0.8 3,476,965 + OH686_16620 0.73 -0.2 3,476,965 + OH686_16620 0.73 +1.0 3,476,965 + OH686_16620 0.73 -0.5 3,476,965 + OH686_16620 0.73 -0.2 3,476,965 + OH686_16620 0.73 +0.4 3,476,965 + OH686_16620 0.73 -0.8 3,476,965 + OH686_16620 0.73 +0.4 3,476,965 + OH686_16620 0.73 +0.1 3,476,965 + OH686_16620 0.73 -0.1 3,476,966 - OH686_16620 0.73 -0.9 3,476,966 - OH686_16620 0.73 +0.1 3,476,966 - OH686_16620 0.73 -0.3 3,476,966 - OH686_16620 0.73 +0.5 3,476,966 - OH686_16620 0.73 -0.6 3,476,966 - OH686_16620 0.73 -0.4 3,476,966 - OH686_16620 0.73 +0.9 3,476,966 - OH686_16620 0.73 +1.7 3,476,966 - OH686_16620 0.73 +0.1 3,476,966 - OH686_16620 0.73 +0.6 3,476,966 - OH686_16620 0.73 -0.6 3,476,966 - OH686_16620 0.73 -0.1 3,476,966 - OH686_16620 0.73 +0.6 3,477,153 - OH686_16620 0.87 -0.2 3,477,380 + -0.4 3,477,380 + -0.1 3,477,380 + -0.1 3,477,380 + +0.2 3,477,380 + -0.5 3,477,381 - +0.2 3,477,381 - +0.2 3,477,381 - -0.9 3,477,381 - +0.2 3,477,394 + OH686_16625 0.13 +0.3 3,477,394 + OH686_16625 0.13 -0.1 3,477,394 + OH686_16625 0.13 +0.5 3,477,394 + OH686_16625 0.13 +0.9 3,477,394 + OH686_16625 0.13 +0.4 3,477,394 + OH686_16625 0.13 +0.5 3,477,394 + OH686_16625 0.13 +0.5 3,477,394 + OH686_16625 0.13 -0.0 3,477,394 + OH686_16625 0.13 +0.1 3,477,394 + OH686_16625 0.13 -0.4 3,477,394 + OH686_16625 0.13 -1.6 3,477,394 + OH686_16625 0.13 +0.3 3,477,394 + OH686_16625 0.13 +0.5 3,477,394 + OH686_16625 0.13 -0.0 3,477,394 + OH686_16625 0.13 +0.6 3,477,394 + OH686_16625 0.13 +0.2 3,477,394 + OH686_16625 0.13 -0.2 3,477,394 + OH686_16625 0.13 -1.3 3,477,395 - OH686_16625 0.13 +0.7 3,477,395 - OH686_16625 0.13 +0.2 3,477,395 - OH686_16625 0.13 -0.1 3,477,395 - OH686_16625 0.13 -0.3 3,477,395 - OH686_16625 0.13 -1.1 3,477,395 - OH686_16625 0.13 -1.2 3,477,395 - OH686_16625 0.13 -0.4 3,477,395 - OH686_16625 0.13 +0.1 3,477,395 - OH686_16625 0.13 -0.1 3,477,449 + OH686_16625 0.25 +0.8 3,477,449 + OH686_16625 0.25 -0.0 3,477,449 + OH686_16625 0.25 -0.2 3,477,449 + OH686_16625 0.25 -0.8 3,477,450 - OH686_16625 0.25 +0.0 3,477,450 - OH686_16625 0.25 -0.5 3,477,503 + OH686_16625 0.37 -1.2 3,477,503 + OH686_16625 0.37 +0.4 3,477,504 - OH686_16625 0.38 +1.1 3,477,801 + +1.0 3,477,801 + -1.1 3,477,801 + -0.7 3,477,802 - -1.0 3,477,802 - +0.7 3,477,888 + OH686_16630 0.10 -0.4 3,477,888 + OH686_16630 0.10 -0.2 3,477,889 - OH686_16630 0.10 +1.4 3,477,889 - OH686_16630 0.10 -0.6 3,477,889 - OH686_16630 0.10 -0.6 3,477,889 - OH686_16630 0.10 -0.3 3,477,889 - OH686_16630 0.10 -0.6 3,478,444 + OH686_16630 0.66 +0.0 3,478,444 + OH686_16630 0.66 +0.3 3,478,593 - OH686_16630 0.81 -0.1 3,478,625 + OH686_16630 0.84 +0.2 3,478,625 + OH686_16630 0.84 +0.1 3,478,625 + OH686_16630 0.84 -0.8 3,478,625 + OH686_16630 0.84 -0.2 3,478,625 + OH686_16630 0.84 +0.8 3,478,625 + OH686_16630 0.84 +0.6 3,478,625 + OH686_16630 0.84 -0.2 3,478,625 + OH686_16630 0.84 +0.4 3,478,626 - OH686_16630 0.84 +1.1 3,478,626 - OH686_16630 0.84 +0.2 3,478,626 - OH686_16630 0.84 -1.5 3,478,626 - OH686_16630 0.84 -0.1 3,478,626 - OH686_16630 0.84 +0.1 3,478,700 - -0.0 3,478,735 + +0.2
Or see this region's nucleotide sequence