Strain Fitness in Pseudomonas sp. S08-1 around OH686_16625

Experiment: Trisodium citrate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOH686_16620 and OH686_16625 are separated by 3 nucleotidesOH686_16625 and OH686_16630 are separated by 7 nucleotides OH686_16620: OH686_16620 - ATP-dependent RNA helicase, at 3,475,984 to 3,477,333 _16620 OH686_16625: OH686_16625 - diguanylate cyclase (GGDEF domain) with PAS/PAC sensor, at 3,477,337 to 3,477,780 _16625 OH686_16630: OH686_16630 - Chemotaxis protein CheC -- inhibitor of MCP methylation, at 3,477,788 to 3,478,786 _16630 Position (kb) 3477 3478Strain fitness (log2 ratio) -1 0 1at 3476.398 kb on + strand, within OH686_16620at 3476.698 kb on + strand, within OH686_16620at 3476.699 kb on - strand, within OH686_16620at 3476.965 kb on + strand, within OH686_16620at 3476.965 kb on + strand, within OH686_16620at 3476.965 kb on + strand, within OH686_16620at 3476.965 kb on + strand, within OH686_16620at 3476.965 kb on + strand, within OH686_16620at 3476.965 kb on + strand, within OH686_16620at 3476.965 kb on + strand, within OH686_16620at 3476.965 kb on + strand, within OH686_16620at 3476.965 kb on + strand, within OH686_16620at 3476.965 kb on + strand, within OH686_16620at 3476.965 kb on + strand, within OH686_16620at 3476.966 kb on - strand, within OH686_16620at 3476.966 kb on - strand, within OH686_16620at 3476.966 kb on - strand, within OH686_16620at 3476.966 kb on - strand, within OH686_16620at 3476.966 kb on - strand, within OH686_16620at 3476.966 kb on - strand, within OH686_16620at 3476.966 kb on - strand, within OH686_16620at 3476.966 kb on - strand, within OH686_16620at 3476.966 kb on - strand, within OH686_16620at 3476.966 kb on - strand, within OH686_16620at 3476.966 kb on - strand, within OH686_16620at 3476.966 kb on - strand, within OH686_16620at 3476.966 kb on - strand, within OH686_16620at 3477.153 kb on - strand, within OH686_16620at 3477.380 kb on + strandat 3477.380 kb on + strandat 3477.380 kb on + strandat 3477.380 kb on + strandat 3477.380 kb on + strandat 3477.381 kb on - strandat 3477.381 kb on - strandat 3477.381 kb on - strandat 3477.381 kb on - strandat 3477.394 kb on + strand, within OH686_16625at 3477.394 kb on + strand, within OH686_16625at 3477.394 kb on + strand, within OH686_16625at 3477.394 kb on + strand, within OH686_16625at 3477.394 kb on + strand, within OH686_16625at 3477.394 kb on + strand, within OH686_16625at 3477.394 kb on + strand, within OH686_16625at 3477.394 kb on + strand, within OH686_16625at 3477.394 kb on + strand, within OH686_16625at 3477.394 kb on + strand, within OH686_16625at 3477.394 kb on + strand, within OH686_16625at 3477.394 kb on + strand, within OH686_16625at 3477.394 kb on + strand, within OH686_16625at 3477.394 kb on + strand, within OH686_16625at 3477.394 kb on + strand, within OH686_16625at 3477.394 kb on + strand, within OH686_16625at 3477.394 kb on + strand, within OH686_16625at 3477.394 kb on + strand, within OH686_16625at 3477.395 kb on - strand, within OH686_16625at 3477.395 kb on - strand, within OH686_16625at 3477.395 kb on - strand, within OH686_16625at 3477.395 kb on - strand, within OH686_16625at 3477.395 kb on - strand, within OH686_16625at 3477.395 kb on - strand, within OH686_16625at 3477.395 kb on - strand, within OH686_16625at 3477.395 kb on - strand, within OH686_16625at 3477.395 kb on - strand, within OH686_16625at 3477.449 kb on + strand, within OH686_16625at 3477.449 kb on + strand, within OH686_16625at 3477.449 kb on + strand, within OH686_16625at 3477.449 kb on + strand, within OH686_16625at 3477.450 kb on - strand, within OH686_16625at 3477.450 kb on - strand, within OH686_16625at 3477.503 kb on + strand, within OH686_16625at 3477.503 kb on + strand, within OH686_16625at 3477.504 kb on - strand, within OH686_16625at 3477.801 kb on + strandat 3477.801 kb on + strandat 3477.801 kb on + strandat 3477.802 kb on - strandat 3477.802 kb on - strandat 3477.888 kb on + strand, within OH686_16630at 3477.888 kb on + strand, within OH686_16630at 3477.889 kb on - strand, within OH686_16630at 3477.889 kb on - strand, within OH686_16630at 3477.889 kb on - strand, within OH686_16630at 3477.889 kb on - strand, within OH686_16630at 3477.889 kb on - strand, within OH686_16630at 3478.444 kb on + strand, within OH686_16630at 3478.444 kb on + strand, within OH686_16630at 3478.593 kb on - strand, within OH686_16630at 3478.625 kb on + strand, within OH686_16630at 3478.625 kb on + strand, within OH686_16630at 3478.625 kb on + strand, within OH686_16630at 3478.625 kb on + strand, within OH686_16630at 3478.625 kb on + strand, within OH686_16630at 3478.625 kb on + strand, within OH686_16630at 3478.625 kb on + strand, within OH686_16630at 3478.625 kb on + strand, within OH686_16630at 3478.626 kb on - strand, within OH686_16630at 3478.626 kb on - strand, within OH686_16630at 3478.626 kb on - strand, within OH686_16630at 3478.626 kb on - strand, within OH686_16630at 3478.626 kb on - strand, within OH686_16630at 3478.700 kb on - strandat 3478.735 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Trisodium citrate (C)
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3,476,398 + OH686_16620 0.31 +0.4
3,476,698 + OH686_16620 0.53 +0.8
3,476,699 - OH686_16620 0.53 +1.3
3,476,965 + OH686_16620 0.73 -0.2
3,476,965 + OH686_16620 0.73 +0.8
3,476,965 + OH686_16620 0.73 -0.2
3,476,965 + OH686_16620 0.73 +1.0
3,476,965 + OH686_16620 0.73 -0.5
3,476,965 + OH686_16620 0.73 -0.2
3,476,965 + OH686_16620 0.73 +0.4
3,476,965 + OH686_16620 0.73 -0.8
3,476,965 + OH686_16620 0.73 +0.4
3,476,965 + OH686_16620 0.73 +0.1
3,476,965 + OH686_16620 0.73 -0.1
3,476,966 - OH686_16620 0.73 -0.9
3,476,966 - OH686_16620 0.73 +0.1
3,476,966 - OH686_16620 0.73 -0.3
3,476,966 - OH686_16620 0.73 +0.5
3,476,966 - OH686_16620 0.73 -0.6
3,476,966 - OH686_16620 0.73 -0.4
3,476,966 - OH686_16620 0.73 +0.9
3,476,966 - OH686_16620 0.73 +1.7
3,476,966 - OH686_16620 0.73 +0.1
3,476,966 - OH686_16620 0.73 +0.6
3,476,966 - OH686_16620 0.73 -0.6
3,476,966 - OH686_16620 0.73 -0.1
3,476,966 - OH686_16620 0.73 +0.6
3,477,153 - OH686_16620 0.87 -0.2
3,477,380 + -0.4
3,477,380 + -0.1
3,477,380 + -0.1
3,477,380 + +0.2
3,477,380 + -0.5
3,477,381 - +0.2
3,477,381 - +0.2
3,477,381 - -0.9
3,477,381 - +0.2
3,477,394 + OH686_16625 0.13 +0.3
3,477,394 + OH686_16625 0.13 -0.1
3,477,394 + OH686_16625 0.13 +0.5
3,477,394 + OH686_16625 0.13 +0.9
3,477,394 + OH686_16625 0.13 +0.4
3,477,394 + OH686_16625 0.13 +0.5
3,477,394 + OH686_16625 0.13 +0.5
3,477,394 + OH686_16625 0.13 -0.0
3,477,394 + OH686_16625 0.13 +0.1
3,477,394 + OH686_16625 0.13 -0.4
3,477,394 + OH686_16625 0.13 -1.6
3,477,394 + OH686_16625 0.13 +0.3
3,477,394 + OH686_16625 0.13 +0.5
3,477,394 + OH686_16625 0.13 -0.0
3,477,394 + OH686_16625 0.13 +0.6
3,477,394 + OH686_16625 0.13 +0.2
3,477,394 + OH686_16625 0.13 -0.2
3,477,394 + OH686_16625 0.13 -1.3
3,477,395 - OH686_16625 0.13 +0.7
3,477,395 - OH686_16625 0.13 +0.2
3,477,395 - OH686_16625 0.13 -0.1
3,477,395 - OH686_16625 0.13 -0.3
3,477,395 - OH686_16625 0.13 -1.1
3,477,395 - OH686_16625 0.13 -1.2
3,477,395 - OH686_16625 0.13 -0.4
3,477,395 - OH686_16625 0.13 +0.1
3,477,395 - OH686_16625 0.13 -0.1
3,477,449 + OH686_16625 0.25 +0.8
3,477,449 + OH686_16625 0.25 -0.0
3,477,449 + OH686_16625 0.25 -0.2
3,477,449 + OH686_16625 0.25 -0.8
3,477,450 - OH686_16625 0.25 +0.0
3,477,450 - OH686_16625 0.25 -0.5
3,477,503 + OH686_16625 0.37 -1.2
3,477,503 + OH686_16625 0.37 +0.4
3,477,504 - OH686_16625 0.38 +1.1
3,477,801 + +1.0
3,477,801 + -1.1
3,477,801 + -0.7
3,477,802 - -1.0
3,477,802 - +0.7
3,477,888 + OH686_16630 0.10 -0.4
3,477,888 + OH686_16630 0.10 -0.2
3,477,889 - OH686_16630 0.10 +1.4
3,477,889 - OH686_16630 0.10 -0.6
3,477,889 - OH686_16630 0.10 -0.6
3,477,889 - OH686_16630 0.10 -0.3
3,477,889 - OH686_16630 0.10 -0.6
3,478,444 + OH686_16630 0.66 +0.0
3,478,444 + OH686_16630 0.66 +0.3
3,478,593 - OH686_16630 0.81 -0.1
3,478,625 + OH686_16630 0.84 +0.2
3,478,625 + OH686_16630 0.84 +0.1
3,478,625 + OH686_16630 0.84 -0.8
3,478,625 + OH686_16630 0.84 -0.2
3,478,625 + OH686_16630 0.84 +0.8
3,478,625 + OH686_16630 0.84 +0.6
3,478,625 + OH686_16630 0.84 -0.2
3,478,625 + OH686_16630 0.84 +0.4
3,478,626 - OH686_16630 0.84 +1.1
3,478,626 - OH686_16630 0.84 +0.2
3,478,626 - OH686_16630 0.84 -1.5
3,478,626 - OH686_16630 0.84 -0.1
3,478,626 - OH686_16630 0.84 +0.1
3,478,700 - -0.0
3,478,735 + +0.2

Or see this region's nucleotide sequence