Experiment: Trisodium citrate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt OH686_09505 and OH686_09510 are separated by 38 nucleotides OH686_09510 and OH686_09515 are separated by 88 nucleotides OH686_09515 and OH686_09520 are separated by 42 nucleotides
OH686_09505: OH686_09505 - 3'-to-5' oligoribonuclease (orn), at 1,940,479 to 1,941,024
_09505
OH686_09510: OH686_09510 - hypothetical protein, at 1,941,063 to 1,941,833
_09510
OH686_09515: OH686_09515 - ribosome small subunit-dependent GTPase A, at 1,941,922 to 1,942,953
_09515
OH686_09520: OH686_09520 - Flagellar motor rotation protein MotB, at 1,942,996 to 1,944,036
_09520
Position (kb)
1941
1942
1943 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1941.040 kb on + strand at 1941.040 kb on + strand at 1941.040 kb on + strand at 1941.040 kb on + strand at 1941.040 kb on + strand at 1941.041 kb on - strand at 1941.041 kb on - strand at 1941.041 kb on - strand at 1941.041 kb on - strand at 1941.041 kb on - strand at 1941.041 kb on - strand at 1941.041 kb on - strand at 1941.041 kb on - strand at 1941.057 kb on - strand at 1941.149 kb on + strand, within OH686_09510 at 1941.149 kb on + strand, within OH686_09510 at 1941.149 kb on + strand, within OH686_09510 at 1941.149 kb on + strand, within OH686_09510 at 1941.149 kb on + strand, within OH686_09510 at 1941.149 kb on + strand, within OH686_09510 at 1941.150 kb on - strand, within OH686_09510 at 1941.150 kb on - strand, within OH686_09510 at 1941.150 kb on - strand, within OH686_09510 at 1941.150 kb on - strand, within OH686_09510 at 1941.150 kb on - strand, within OH686_09510 at 1941.150 kb on - strand, within OH686_09510 at 1941.150 kb on - strand, within OH686_09510 at 1941.150 kb on - strand, within OH686_09510 at 1941.150 kb on - strand, within OH686_09510 at 1941.150 kb on - strand, within OH686_09510 at 1941.150 kb on - strand, within OH686_09510 at 1941.150 kb on - strand, within OH686_09510 at 1941.201 kb on + strand, within OH686_09510 at 1941.201 kb on + strand, within OH686_09510 at 1941.201 kb on + strand, within OH686_09510 at 1941.202 kb on - strand, within OH686_09510 at 1941.202 kb on - strand, within OH686_09510 at 1941.202 kb on - strand, within OH686_09510 at 1941.235 kb on + strand, within OH686_09510 at 1941.235 kb on + strand, within OH686_09510 at 1941.235 kb on + strand, within OH686_09510 at 1941.235 kb on + strand, within OH686_09510 at 1941.235 kb on + strand, within OH686_09510 at 1941.235 kb on + strand, within OH686_09510 at 1941.236 kb on - strand, within OH686_09510 at 1941.236 kb on - strand, within OH686_09510 at 1941.236 kb on - strand, within OH686_09510 at 1941.236 kb on - strand, within OH686_09510 at 1941.236 kb on - strand, within OH686_09510 at 1941.236 kb on - strand, within OH686_09510 at 1941.247 kb on + strand, within OH686_09510 at 1941.248 kb on - strand, within OH686_09510 at 1941.248 kb on - strand, within OH686_09510 at 1941.248 kb on - strand, within OH686_09510 at 1941.499 kb on + strand, within OH686_09510 at 1941.499 kb on + strand, within OH686_09510 at 1941.499 kb on + strand, within OH686_09510 at 1941.500 kb on - strand, within OH686_09510 at 1941.500 kb on - strand, within OH686_09510 at 1941.709 kb on - strand, within OH686_09510 at 1941.845 kb on + strand at 1941.846 kb on - strand at 1941.846 kb on - strand at 1941.885 kb on + strand at 1941.885 kb on + strand at 1941.885 kb on + strand at 1941.885 kb on + strand at 1941.886 kb on - strand at 1941.886 kb on - strand at 1941.886 kb on - strand at 1941.905 kb on + strand at 1941.905 kb on + strand at 1941.905 kb on + strand at 1941.905 kb on + strand at 1941.905 kb on + strand at 1941.905 kb on + strand at 1941.905 kb on + strand at 1941.905 kb on + strand at 1941.905 kb on + strand at 1941.905 kb on + strand at 1941.905 kb on + strand at 1941.905 kb on + strand at 1941.905 kb on + strand at 1941.906 kb on - strand at 1941.906 kb on - strand at 1941.906 kb on - strand at 1941.906 kb on - strand at 1941.906 kb on - strand at 1941.906 kb on - strand at 1941.906 kb on - strand at 1941.907 kb on + strand at 1941.907 kb on + strand at 1941.907 kb on + strand at 1941.907 kb on + strand at 1941.907 kb on + strand at 1941.907 kb on + strand at 1941.907 kb on + strand at 1941.907 kb on + strand at 1941.907 kb on + strand at 1941.907 kb on + strand at 1941.907 kb on + strand at 1941.907 kb on + strand at 1941.907 kb on + strand at 1941.907 kb on + strand at 1941.907 kb on + strand at 1941.907 kb on + strand at 1941.907 kb on + strand at 1941.907 kb on + strand at 1941.908 kb on - strand at 1941.908 kb on - strand at 1941.908 kb on - strand at 1941.908 kb on - strand at 1941.908 kb on - strand at 1941.908 kb on - strand at 1941.908 kb on - strand at 1941.908 kb on - strand at 1941.908 kb on - strand at 1941.908 kb on - strand at 1941.908 kb on - strand at 1941.908 kb on - strand at 1941.908 kb on - strand at 1941.908 kb on - strand at 1941.908 kb on - strand at 1941.908 kb on - strand at 1941.908 kb on - strand at 1941.909 kb on + strand at 1941.909 kb on + strand at 1941.909 kb on + strand at 1941.910 kb on - strand at 1941.910 kb on - strand at 1941.910 kb on - strand at 1941.910 kb on - strand at 1941.910 kb on - strand at 1941.910 kb on - strand at 1942.949 kb on - strand at 1942.949 kb on - strand at 1942.949 kb on - strand at 1942.949 kb on - strand at 1942.954 kb on + strand at 1942.954 kb on + strand at 1942.954 kb on + strand at 1942.954 kb on + strand at 1943.273 kb on + strand, within OH686_09520 at 1943.273 kb on + strand, within OH686_09520 at 1943.274 kb on - strand, within OH686_09520 at 1943.274 kb on - strand, within OH686_09520 at 1943.274 kb on - strand, within OH686_09520 at 1943.325 kb on + strand, within OH686_09520 at 1943.325 kb on + strand, within OH686_09520 at 1943.325 kb on + strand, within OH686_09520 at 1943.326 kb on - strand, within OH686_09520 at 1943.326 kb on - strand, within OH686_09520 at 1943.368 kb on - strand, within OH686_09520 at 1943.407 kb on - strand, within OH686_09520 at 1943.480 kb on + strand, within OH686_09520 at 1943.480 kb on + strand, within OH686_09520 at 1943.480 kb on + strand, within OH686_09520 at 1943.480 kb on + strand, within OH686_09520 at 1943.481 kb on - strand, within OH686_09520 at 1943.481 kb on - strand, within OH686_09520 at 1943.481 kb on - strand, within OH686_09520 at 1943.481 kb on - strand, within OH686_09520 at 1943.481 kb on - strand, within OH686_09520 at 1943.481 kb on - strand, within OH686_09520 at 1943.481 kb on - strand, within OH686_09520 at 1943.819 kb on + strand, within OH686_09520 at 1943.819 kb on + strand, within OH686_09520 at 1943.819 kb on + strand, within OH686_09520 at 1943.819 kb on + strand, within OH686_09520 at 1943.819 kb on + strand, within OH686_09520 at 1943.819 kb on + strand, within OH686_09520 at 1943.819 kb on + strand, within OH686_09520 at 1943.819 kb on + strand, within OH686_09520 at 1943.819 kb on + strand, within OH686_09520 at 1943.819 kb on + strand, within OH686_09520 at 1943.820 kb on - strand, within OH686_09520 at 1943.820 kb on - strand, within OH686_09520 at 1943.820 kb on - strand, within OH686_09520 at 1943.820 kb on - strand, within OH686_09520 at 1943.820 kb on - strand, within OH686_09520 at 1943.820 kb on - strand, within OH686_09520 at 1943.820 kb on - strand, within OH686_09520 at 1943.820 kb on - strand, within OH686_09520 at 1943.820 kb on - strand, within OH686_09520 at 1943.820 kb on - strand, within OH686_09520 at 1943.820 kb on - strand, within OH686_09520 at 1943.820 kb on - strand, within OH686_09520 at 1943.917 kb on + strand, within OH686_09520 at 1943.917 kb on + strand, within OH686_09520 at 1943.917 kb on + strand, within OH686_09520 at 1943.917 kb on + strand, within OH686_09520 at 1943.934 kb on + strand at 1943.935 kb on - strand at 1943.935 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Trisodium citrate (C) remove 1,941,040 + -0.3 1,941,040 + +0.5 1,941,040 + +0.4 1,941,040 + +0.9 1,941,040 + +0.9 1,941,041 - -0.4 1,941,041 - +0.6 1,941,041 - +0.8 1,941,041 - -0.5 1,941,041 - +0.1 1,941,041 - -0.4 1,941,041 - -0.2 1,941,041 - -0.8 1,941,057 - -1.4 1,941,149 + OH686_09510 0.11 -0.2 1,941,149 + OH686_09510 0.11 -2.4 1,941,149 + OH686_09510 0.11 -0.6 1,941,149 + OH686_09510 0.11 -0.7 1,941,149 + OH686_09510 0.11 -0.1 1,941,149 + OH686_09510 0.11 -0.1 1,941,150 - OH686_09510 0.11 -0.6 1,941,150 - OH686_09510 0.11 +0.4 1,941,150 - OH686_09510 0.11 -1.4 1,941,150 - OH686_09510 0.11 -0.2 1,941,150 - OH686_09510 0.11 +0.3 1,941,150 - OH686_09510 0.11 +0.7 1,941,150 - OH686_09510 0.11 +0.1 1,941,150 - OH686_09510 0.11 -0.6 1,941,150 - OH686_09510 0.11 -0.1 1,941,150 - OH686_09510 0.11 +1.1 1,941,150 - OH686_09510 0.11 -0.8 1,941,150 - OH686_09510 0.11 +0.0 1,941,201 + OH686_09510 0.18 +0.4 1,941,201 + OH686_09510 0.18 +0.4 1,941,201 + OH686_09510 0.18 -0.0 1,941,202 - OH686_09510 0.18 -0.1 1,941,202 - OH686_09510 0.18 +0.1 1,941,202 - OH686_09510 0.18 +2.2 1,941,235 + OH686_09510 0.22 -0.8 1,941,235 + OH686_09510 0.22 +0.8 1,941,235 + OH686_09510 0.22 +0.3 1,941,235 + OH686_09510 0.22 -0.5 1,941,235 + OH686_09510 0.22 +0.2 1,941,235 + OH686_09510 0.22 -1.3 1,941,236 - OH686_09510 0.22 +0.6 1,941,236 - OH686_09510 0.22 -0.6 1,941,236 - OH686_09510 0.22 +0.4 1,941,236 - OH686_09510 0.22 +0.1 1,941,236 - OH686_09510 0.22 -0.1 1,941,236 - OH686_09510 0.22 -0.0 1,941,247 + OH686_09510 0.24 +0.3 1,941,248 - OH686_09510 0.24 +1.2 1,941,248 - OH686_09510 0.24 +0.4 1,941,248 - OH686_09510 0.24 +0.2 1,941,499 + OH686_09510 0.57 -0.6 1,941,499 + OH686_09510 0.57 -1.0 1,941,499 + OH686_09510 0.57 +0.1 1,941,500 - OH686_09510 0.57 +0.2 1,941,500 - OH686_09510 0.57 -0.0 1,941,709 - OH686_09510 0.84 +0.3 1,941,845 + +0.8 1,941,846 - -0.1 1,941,846 - -0.3 1,941,885 + +0.6 1,941,885 + -2.8 1,941,885 + +0.2 1,941,885 + +1.2 1,941,886 - +0.1 1,941,886 - -1.0 1,941,886 - +0.4 1,941,905 + +0.9 1,941,905 + -0.5 1,941,905 + -1.2 1,941,905 + +0.7 1,941,905 + -2.3 1,941,905 + +0.4 1,941,905 + -0.1 1,941,905 + -0.8 1,941,905 + -0.2 1,941,905 + -0.8 1,941,905 + +1.8 1,941,905 + +0.1 1,941,905 + -0.8 1,941,906 - -0.2 1,941,906 - -0.2 1,941,906 - +0.4 1,941,906 - -0.2 1,941,906 - +1.1 1,941,906 - +0.3 1,941,906 - -0.0 1,941,907 + +0.8 1,941,907 + -0.1 1,941,907 + +1.3 1,941,907 + +0.2 1,941,907 + -0.3 1,941,907 + +0.5 1,941,907 + +0.2 1,941,907 + +0.4 1,941,907 + +0.4 1,941,907 + +0.1 1,941,907 + +1.1 1,941,907 + -0.1 1,941,907 + -0.0 1,941,907 + +0.1 1,941,907 + -0.7 1,941,907 + +0.0 1,941,907 + -0.8 1,941,907 + +0.2 1,941,908 - -0.1 1,941,908 - +0.6 1,941,908 - -0.2 1,941,908 - -0.9 1,941,908 - +0.1 1,941,908 - -1.1 1,941,908 - -0.8 1,941,908 - +0.7 1,941,908 - -0.3 1,941,908 - +0.7 1,941,908 - -0.4 1,941,908 - -0.1 1,941,908 - +0.5 1,941,908 - +0.2 1,941,908 - +1.1 1,941,908 - -0.0 1,941,908 - +0.8 1,941,909 + +0.1 1,941,909 + +0.3 1,941,909 + +0.1 1,941,910 - -0.2 1,941,910 - +0.1 1,941,910 - +0.4 1,941,910 - +0.7 1,941,910 - -0.6 1,941,910 - -0.4 1,942,949 - -1.3 1,942,949 - +0.8 1,942,949 - +1.2 1,942,949 - -0.0 1,942,954 + -0.3 1,942,954 + +0.1 1,942,954 + -0.2 1,942,954 + +0.8 1,943,273 + OH686_09520 0.27 -0.1 1,943,273 + OH686_09520 0.27 -1.9 1,943,274 - OH686_09520 0.27 +0.1 1,943,274 - OH686_09520 0.27 -0.5 1,943,274 - OH686_09520 0.27 -0.1 1,943,325 + OH686_09520 0.32 +1.8 1,943,325 + OH686_09520 0.32 +0.1 1,943,325 + OH686_09520 0.32 +0.7 1,943,326 - OH686_09520 0.32 +0.9 1,943,326 - OH686_09520 0.32 +0.5 1,943,368 - OH686_09520 0.36 +0.8 1,943,407 - OH686_09520 0.39 -0.7 1,943,480 + OH686_09520 0.46 -1.2 1,943,480 + OH686_09520 0.46 -0.4 1,943,480 + OH686_09520 0.46 +0.6 1,943,480 + OH686_09520 0.46 -0.3 1,943,481 - OH686_09520 0.47 -0.3 1,943,481 - OH686_09520 0.47 -0.3 1,943,481 - OH686_09520 0.47 +1.2 1,943,481 - OH686_09520 0.47 +0.2 1,943,481 - OH686_09520 0.47 +0.6 1,943,481 - OH686_09520 0.47 +0.6 1,943,481 - OH686_09520 0.47 -0.8 1,943,819 + OH686_09520 0.79 -0.0 1,943,819 + OH686_09520 0.79 -0.6 1,943,819 + OH686_09520 0.79 +0.8 1,943,819 + OH686_09520 0.79 -0.4 1,943,819 + OH686_09520 0.79 +0.2 1,943,819 + OH686_09520 0.79 +0.2 1,943,819 + OH686_09520 0.79 +0.4 1,943,819 + OH686_09520 0.79 -0.3 1,943,819 + OH686_09520 0.79 -0.5 1,943,819 + OH686_09520 0.79 +1.0 1,943,820 - OH686_09520 0.79 -0.5 1,943,820 - OH686_09520 0.79 +1.7 1,943,820 - OH686_09520 0.79 -0.6 1,943,820 - OH686_09520 0.79 +0.1 1,943,820 - OH686_09520 0.79 +0.5 1,943,820 - OH686_09520 0.79 +0.5 1,943,820 - OH686_09520 0.79 +0.2 1,943,820 - OH686_09520 0.79 +0.5 1,943,820 - OH686_09520 0.79 -1.9 1,943,820 - OH686_09520 0.79 -0.1 1,943,820 - OH686_09520 0.79 +0.3 1,943,820 - OH686_09520 0.79 -0.4 1,943,917 + OH686_09520 0.88 +0.8 1,943,917 + OH686_09520 0.88 +0.1 1,943,917 + OH686_09520 0.88 +1.2 1,943,917 + OH686_09520 0.88 +0.2 1,943,934 + +0.3 1,943,935 - -0.1 1,943,935 - +1.7
Or see this region's nucleotide sequence