Strain Fitness in Pseudomonas sp. S08-1 around OH686_05610

Experiment: Trisodium citrate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOH686_05600 and OH686_05605 are separated by 124 nucleotidesOH686_05605 and OH686_05610 are separated by 95 nucleotidesOH686_05610 and OH686_05615 are separated by 85 nucleotidesOH686_05615 and OH686_05620 overlap by 38 nucleotides OH686_05600: OH686_05600 - Bis(5'-nucleosyl)-tetraphosphatase (asymmetrical) , at 1,130,582 to 1,131,019 _05600 OH686_05605: OH686_05605 - Glutathione S-transferase , at 1,131,144 to 1,131,848 _05605 OH686_05610: OH686_05610 - hypothetical protein, at 1,131,944 to 1,132,795 _05610 OH686_05615: OH686_05615 - hypothetical protein, at 1,132,881 to 1,133,435 _05615 OH686_05620: OH686_05620 - Transcriptional regulator, LysR family, at 1,133,398 to 1,134,345 _05620 Position (kb) 1131 1132 1133Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1130.949 kb on + strand, within OH686_05600at 1130.949 kb on + strand, within OH686_05600at 1130.949 kb on + strand, within OH686_05600at 1130.949 kb on + strand, within OH686_05600at 1130.949 kb on + strand, within OH686_05600at 1130.949 kb on + strand, within OH686_05600at 1130.949 kb on + strand, within OH686_05600at 1130.949 kb on + strand, within OH686_05600at 1130.949 kb on + strand, within OH686_05600at 1130.949 kb on + strand, within OH686_05600at 1130.950 kb on - strand, within OH686_05600at 1130.950 kb on - strand, within OH686_05600at 1130.950 kb on - strand, within OH686_05600at 1130.950 kb on - strand, within OH686_05600at 1130.950 kb on - strand, within OH686_05600at 1130.950 kb on - strand, within OH686_05600at 1131.000 kb on + strandat 1131.000 kb on + strandat 1131.000 kb on + strandat 1131.000 kb on + strandat 1131.000 kb on + strandat 1131.001 kb on - strandat 1131.001 kb on - strandat 1131.001 kb on - strandat 1131.080 kb on + strandat 1131.080 kb on + strandat 1131.080 kb on + strandat 1131.081 kb on - strandat 1131.081 kb on - strandat 1131.081 kb on - strandat 1131.139 kb on + strandat 1131.139 kb on + strandat 1131.139 kb on + strandat 1131.139 kb on + strandat 1131.139 kb on + strandat 1131.140 kb on - strandat 1131.140 kb on - strandat 1131.213 kb on + strandat 1131.213 kb on + strandat 1131.213 kb on + strandat 1131.213 kb on + strandat 1131.429 kb on + strand, within OH686_05605at 1131.430 kb on - strand, within OH686_05605at 1131.430 kb on - strand, within OH686_05605at 1131.573 kb on + strand, within OH686_05605at 1131.574 kb on - strand, within OH686_05605at 1131.574 kb on - strand, within OH686_05605at 1131.574 kb on - strand, within OH686_05605at 1131.574 kb on - strand, within OH686_05605at 1131.600 kb on + strand, within OH686_05605at 1131.600 kb on + strand, within OH686_05605at 1131.678 kb on + strand, within OH686_05605at 1131.678 kb on + strand, within OH686_05605at 1131.678 kb on + strand, within OH686_05605at 1131.679 kb on - strand, within OH686_05605at 1131.679 kb on - strand, within OH686_05605at 1131.679 kb on - strand, within OH686_05605at 1131.679 kb on - strand, within OH686_05605at 1131.679 kb on - strand, within OH686_05605at 1131.732 kb on + strand, within OH686_05605at 1131.732 kb on + strand, within OH686_05605at 1131.733 kb on - strand, within OH686_05605at 1131.733 kb on - strand, within OH686_05605at 1131.733 kb on - strand, within OH686_05605at 1131.889 kb on + strandat 1131.889 kb on + strandat 1131.889 kb on + strandat 1132.047 kb on + strand, within OH686_05610at 1132.047 kb on + strand, within OH686_05610at 1132.048 kb on - strand, within OH686_05610at 1132.048 kb on - strand, within OH686_05610at 1132.048 kb on - strand, within OH686_05610at 1132.105 kb on + strand, within OH686_05610at 1132.105 kb on + strand, within OH686_05610at 1132.106 kb on - strand, within OH686_05610at 1132.139 kb on + strand, within OH686_05610at 1132.139 kb on + strand, within OH686_05610at 1132.139 kb on + strand, within OH686_05610at 1132.139 kb on + strand, within OH686_05610at 1132.139 kb on + strand, within OH686_05610at 1132.139 kb on + strand, within OH686_05610at 1132.140 kb on - strand, within OH686_05610at 1132.140 kb on - strand, within OH686_05610at 1132.140 kb on - strand, within OH686_05610at 1132.140 kb on - strand, within OH686_05610at 1132.140 kb on - strand, within OH686_05610at 1132.155 kb on - strand, within OH686_05610at 1132.155 kb on - strand, within OH686_05610at 1132.157 kb on + strand, within OH686_05610at 1132.157 kb on + strand, within OH686_05610at 1132.157 kb on + strand, within OH686_05610at 1132.157 kb on + strand, within OH686_05610at 1132.157 kb on + strand, within OH686_05610at 1132.157 kb on + strand, within OH686_05610at 1132.157 kb on + strand, within OH686_05610at 1132.157 kb on + strand, within OH686_05610at 1132.157 kb on + strand, within OH686_05610at 1132.157 kb on + strand, within OH686_05610at 1132.157 kb on + strand, within OH686_05610at 1132.157 kb on + strand, within OH686_05610at 1132.158 kb on - strand, within OH686_05610at 1132.158 kb on - strand, within OH686_05610at 1132.158 kb on - strand, within OH686_05610at 1132.158 kb on - strand, within OH686_05610at 1132.158 kb on - strand, within OH686_05610at 1132.158 kb on - strand, within OH686_05610at 1132.158 kb on - strand, within OH686_05610at 1132.158 kb on - strand, within OH686_05610at 1132.158 kb on - strand, within OH686_05610at 1132.158 kb on - strand, within OH686_05610at 1132.158 kb on - strand, within OH686_05610at 1132.158 kb on - strand, within OH686_05610at 1132.160 kb on + strand, within OH686_05610at 1132.160 kb on + strand, within OH686_05610at 1132.161 kb on - strand, within OH686_05610at 1132.161 kb on - strand, within OH686_05610at 1132.161 kb on - strand, within OH686_05610at 1132.256 kb on + strand, within OH686_05610at 1132.256 kb on + strand, within OH686_05610at 1132.256 kb on + strand, within OH686_05610at 1132.256 kb on + strand, within OH686_05610at 1132.257 kb on - strand, within OH686_05610at 1132.257 kb on - strand, within OH686_05610at 1132.257 kb on - strand, within OH686_05610at 1132.257 kb on - strand, within OH686_05610at 1132.257 kb on - strand, within OH686_05610at 1132.257 kb on - strand, within OH686_05610at 1132.322 kb on + strand, within OH686_05610at 1132.322 kb on + strand, within OH686_05610at 1132.322 kb on + strand, within OH686_05610at 1132.322 kb on + strand, within OH686_05610at 1132.322 kb on + strand, within OH686_05610at 1132.322 kb on + strand, within OH686_05610at 1132.323 kb on - strand, within OH686_05610at 1132.323 kb on - strand, within OH686_05610at 1132.323 kb on - strand, within OH686_05610at 1132.323 kb on - strand, within OH686_05610at 1132.323 kb on - strand, within OH686_05610at 1132.415 kb on + strand, within OH686_05610at 1132.416 kb on - strand, within OH686_05610at 1132.416 kb on - strand, within OH686_05610at 1132.416 kb on - strand, within OH686_05610at 1132.433 kb on + strand, within OH686_05610at 1132.444 kb on + strand, within OH686_05610at 1132.496 kb on + strand, within OH686_05610at 1132.496 kb on + strand, within OH686_05610at 1132.496 kb on + strand, within OH686_05610at 1132.496 kb on + strand, within OH686_05610at 1132.496 kb on + strand, within OH686_05610at 1132.497 kb on - strand, within OH686_05610at 1132.497 kb on - strand, within OH686_05610at 1132.497 kb on - strand, within OH686_05610at 1132.586 kb on + strand, within OH686_05610at 1132.586 kb on + strand, within OH686_05610at 1132.586 kb on + strand, within OH686_05610at 1132.587 kb on - strand, within OH686_05610at 1132.709 kb on + strand, within OH686_05610at 1132.709 kb on + strand, within OH686_05610at 1132.709 kb on + strand, within OH686_05610at 1132.710 kb on - strandat 1132.710 kb on - strandat 1132.710 kb on - strandat 1132.857 kb on - strandat 1132.912 kb on + strandat 1132.913 kb on - strandat 1133.023 kb on - strand, within OH686_05615at 1133.023 kb on - strand, within OH686_05615at 1133.023 kb on - strand, within OH686_05615at 1133.023 kb on - strand, within OH686_05615at 1133.200 kb on - strand, within OH686_05615at 1133.238 kb on + strand, within OH686_05615at 1133.395 kb on + strandat 1133.469 kb on - strandat 1133.469 kb on - strandat 1133.479 kb on + strandat 1133.479 kb on + strandat 1133.480 kb on - strandat 1133.480 kb on - strandat 1133.480 kb on - strandat 1133.516 kb on + strand, within OH686_05620at 1133.516 kb on + strand, within OH686_05620at 1133.517 kb on - strand, within OH686_05620at 1133.517 kb on - strand, within OH686_05620at 1133.517 kb on - strand, within OH686_05620at 1133.517 kb on - strand, within OH686_05620at 1133.517 kb on - strand, within OH686_05620at 1133.562 kb on - strand, within OH686_05620at 1133.562 kb on - strand, within OH686_05620at 1133.601 kb on - strand, within OH686_05620at 1133.601 kb on - strand, within OH686_05620at 1133.672 kb on + strand, within OH686_05620at 1133.672 kb on + strand, within OH686_05620at 1133.672 kb on + strand, within OH686_05620at 1133.672 kb on + strand, within OH686_05620at 1133.672 kb on + strand, within OH686_05620at 1133.673 kb on - strand, within OH686_05620at 1133.673 kb on - strand, within OH686_05620at 1133.673 kb on - strand, within OH686_05620at 1133.673 kb on - strand, within OH686_05620at 1133.673 kb on - strand, within OH686_05620at 1133.673 kb on - strand, within OH686_05620at 1133.673 kb on - strand, within OH686_05620at 1133.716 kb on - strand, within OH686_05620at 1133.795 kb on + strand, within OH686_05620at 1133.795 kb on + strand, within OH686_05620at 1133.795 kb on + strand, within OH686_05620at 1133.795 kb on + strand, within OH686_05620at 1133.795 kb on + strand, within OH686_05620at 1133.795 kb on + strand, within OH686_05620at 1133.795 kb on + strand, within OH686_05620at 1133.795 kb on + strand, within OH686_05620at 1133.795 kb on + strand, within OH686_05620

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Per-strain Table

Position Strand Gene LocusTag Fraction Trisodium citrate (C)
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1,130,949 + OH686_05600 0.84 -0.2
1,130,949 + OH686_05600 0.84 -1.0
1,130,949 + OH686_05600 0.84 -0.7
1,130,949 + OH686_05600 0.84 -2.5
1,130,949 + OH686_05600 0.84 -0.0
1,130,949 + OH686_05600 0.84 +1.3
1,130,949 + OH686_05600 0.84 -0.6
1,130,949 + OH686_05600 0.84 -0.1
1,130,949 + OH686_05600 0.84 +0.1
1,130,949 + OH686_05600 0.84 -0.4
1,130,950 - OH686_05600 0.84 +0.4
1,130,950 - OH686_05600 0.84 +1.6
1,130,950 - OH686_05600 0.84 -0.8
1,130,950 - OH686_05600 0.84 +0.5
1,130,950 - OH686_05600 0.84 -0.7
1,130,950 - OH686_05600 0.84 -0.7
1,131,000 + -0.2
1,131,000 + -1.2
1,131,000 + -0.3
1,131,000 + -0.1
1,131,000 + +0.2
1,131,001 - +0.1
1,131,001 - +0.2
1,131,001 - +0.2
1,131,080 + +0.4
1,131,080 + -0.3
1,131,080 + -1.0
1,131,081 - -0.3
1,131,081 - +0.4
1,131,081 - +0.7
1,131,139 + -0.2
1,131,139 + -0.8
1,131,139 + +0.5
1,131,139 + -0.3
1,131,139 + +0.6
1,131,140 - -0.7
1,131,140 - -0.2
1,131,213 + -0.6
1,131,213 + +0.1
1,131,213 + +0.5
1,131,213 + +0.3
1,131,429 + OH686_05605 0.40 -0.1
1,131,430 - OH686_05605 0.41 -0.0
1,131,430 - OH686_05605 0.41 -0.8
1,131,573 + OH686_05605 0.61 -0.7
1,131,574 - OH686_05605 0.61 +0.0
1,131,574 - OH686_05605 0.61 +0.1
1,131,574 - OH686_05605 0.61 -0.7
1,131,574 - OH686_05605 0.61 +0.0
1,131,600 + OH686_05605 0.65 +2.4
1,131,600 + OH686_05605 0.65 +0.2
1,131,678 + OH686_05605 0.76 -0.2
1,131,678 + OH686_05605 0.76 +0.6
1,131,678 + OH686_05605 0.76 -0.1
1,131,679 - OH686_05605 0.76 -0.3
1,131,679 - OH686_05605 0.76 -0.4
1,131,679 - OH686_05605 0.76 -0.7
1,131,679 - OH686_05605 0.76 -0.6
1,131,679 - OH686_05605 0.76 -0.5
1,131,732 + OH686_05605 0.83 -0.4
1,131,732 + OH686_05605 0.83 -0.1
1,131,733 - OH686_05605 0.84 -0.8
1,131,733 - OH686_05605 0.84 -0.1
1,131,733 - OH686_05605 0.84 -0.7
1,131,889 + +0.8
1,131,889 + -0.2
1,131,889 + -0.1
1,132,047 + OH686_05610 0.12 -0.2
1,132,047 + OH686_05610 0.12 -0.1
1,132,048 - OH686_05610 0.12 +0.2
1,132,048 - OH686_05610 0.12 -0.1
1,132,048 - OH686_05610 0.12 -3.7
1,132,105 + OH686_05610 0.19 -0.1
1,132,105 + OH686_05610 0.19 +0.3
1,132,106 - OH686_05610 0.19 +0.1
1,132,139 + OH686_05610 0.23 -0.0
1,132,139 + OH686_05610 0.23 +0.4
1,132,139 + OH686_05610 0.23 +0.5
1,132,139 + OH686_05610 0.23 -1.0
1,132,139 + OH686_05610 0.23 +0.2
1,132,139 + OH686_05610 0.23 +0.1
1,132,140 - OH686_05610 0.23 +0.2
1,132,140 - OH686_05610 0.23 +0.3
1,132,140 - OH686_05610 0.23 +0.7
1,132,140 - OH686_05610 0.23 +0.2
1,132,140 - OH686_05610 0.23 +0.9
1,132,155 - OH686_05610 0.25 +0.5
1,132,155 - OH686_05610 0.25 -0.1
1,132,157 + OH686_05610 0.25 -0.9
1,132,157 + OH686_05610 0.25 -2.3
1,132,157 + OH686_05610 0.25 -1.6
1,132,157 + OH686_05610 0.25 -0.2
1,132,157 + OH686_05610 0.25 +0.4
1,132,157 + OH686_05610 0.25 +0.7
1,132,157 + OH686_05610 0.25 +1.8
1,132,157 + OH686_05610 0.25 +0.8
1,132,157 + OH686_05610 0.25 -0.2
1,132,157 + OH686_05610 0.25 +1.4
1,132,157 + OH686_05610 0.25 +0.3
1,132,157 + OH686_05610 0.25 +0.4
1,132,158 - OH686_05610 0.25 +0.2
1,132,158 - OH686_05610 0.25 -0.2
1,132,158 - OH686_05610 0.25 +0.3
1,132,158 - OH686_05610 0.25 -0.1
1,132,158 - OH686_05610 0.25 +1.0
1,132,158 - OH686_05610 0.25 -1.5
1,132,158 - OH686_05610 0.25 +0.5
1,132,158 - OH686_05610 0.25 +0.8
1,132,158 - OH686_05610 0.25 +0.3
1,132,158 - OH686_05610 0.25 +0.5
1,132,158 - OH686_05610 0.25 -0.8
1,132,158 - OH686_05610 0.25 +0.4
1,132,160 + OH686_05610 0.25 -1.0
1,132,160 + OH686_05610 0.25 -1.1
1,132,161 - OH686_05610 0.25 +0.6
1,132,161 - OH686_05610 0.25 -0.8
1,132,161 - OH686_05610 0.25 -0.1
1,132,256 + OH686_05610 0.37 +0.7
1,132,256 + OH686_05610 0.37 +0.0
1,132,256 + OH686_05610 0.37 -0.3
1,132,256 + OH686_05610 0.37 +0.9
1,132,257 - OH686_05610 0.37 -0.3
1,132,257 - OH686_05610 0.37 +0.6
1,132,257 - OH686_05610 0.37 -1.7
1,132,257 - OH686_05610 0.37 -0.3
1,132,257 - OH686_05610 0.37 +0.1
1,132,257 - OH686_05610 0.37 -0.3
1,132,322 + OH686_05610 0.44 -0.6
1,132,322 + OH686_05610 0.44 +0.6
1,132,322 + OH686_05610 0.44 +0.2
1,132,322 + OH686_05610 0.44 -0.8
1,132,322 + OH686_05610 0.44 -0.1
1,132,322 + OH686_05610 0.44 +0.3
1,132,323 - OH686_05610 0.44 +0.4
1,132,323 - OH686_05610 0.44 +1.0
1,132,323 - OH686_05610 0.44 +0.5
1,132,323 - OH686_05610 0.44 +1.3
1,132,323 - OH686_05610 0.44 -0.2
1,132,415 + OH686_05610 0.55 +0.8
1,132,416 - OH686_05610 0.55 -0.7
1,132,416 - OH686_05610 0.55 -1.0
1,132,416 - OH686_05610 0.55 -1.4
1,132,433 + OH686_05610 0.57 +0.0
1,132,444 + OH686_05610 0.59 +0.5
1,132,496 + OH686_05610 0.65 -0.2
1,132,496 + OH686_05610 0.65 +0.2
1,132,496 + OH686_05610 0.65 +1.0
1,132,496 + OH686_05610 0.65 +0.5
1,132,496 + OH686_05610 0.65 -0.5
1,132,497 - OH686_05610 0.65 -0.1
1,132,497 - OH686_05610 0.65 +0.2
1,132,497 - OH686_05610 0.65 -0.6
1,132,586 + OH686_05610 0.75 +0.5
1,132,586 + OH686_05610 0.75 -1.5
1,132,586 + OH686_05610 0.75 -1.7
1,132,587 - OH686_05610 0.75 +0.3
1,132,709 + OH686_05610 0.90 -0.2
1,132,709 + OH686_05610 0.90 +0.1
1,132,709 + OH686_05610 0.90 +0.4
1,132,710 - -1.1
1,132,710 - -0.1
1,132,710 - +0.8
1,132,857 - +1.3
1,132,912 + +0.0
1,132,913 - -0.0
1,133,023 - OH686_05615 0.26 +0.5
1,133,023 - OH686_05615 0.26 +0.6
1,133,023 - OH686_05615 0.26 +0.8
1,133,023 - OH686_05615 0.26 -0.8
1,133,200 - OH686_05615 0.57 -0.3
1,133,238 + OH686_05615 0.64 +0.4
1,133,395 + +0.1
1,133,469 - +0.3
1,133,469 - +0.2
1,133,479 + +0.1
1,133,479 + +0.2
1,133,480 - -0.2
1,133,480 - +0.2
1,133,480 - +0.4
1,133,516 + OH686_05620 0.12 -0.1
1,133,516 + OH686_05620 0.12 -1.1
1,133,517 - OH686_05620 0.13 +0.9
1,133,517 - OH686_05620 0.13 -0.2
1,133,517 - OH686_05620 0.13 -0.5
1,133,517 - OH686_05620 0.13 +0.1
1,133,517 - OH686_05620 0.13 -1.0
1,133,562 - OH686_05620 0.17 +0.4
1,133,562 - OH686_05620 0.17 -2.1
1,133,601 - OH686_05620 0.21 +0.6
1,133,601 - OH686_05620 0.21 +0.0
1,133,672 + OH686_05620 0.29 -0.0
1,133,672 + OH686_05620 0.29 +0.9
1,133,672 + OH686_05620 0.29 -0.5
1,133,672 + OH686_05620 0.29 -0.4
1,133,672 + OH686_05620 0.29 -1.4
1,133,673 - OH686_05620 0.29 -0.6
1,133,673 - OH686_05620 0.29 -0.6
1,133,673 - OH686_05620 0.29 +0.1
1,133,673 - OH686_05620 0.29 -0.1
1,133,673 - OH686_05620 0.29 -0.0
1,133,673 - OH686_05620 0.29 -0.3
1,133,673 - OH686_05620 0.29 +2.1
1,133,716 - OH686_05620 0.34 -0.3
1,133,795 + OH686_05620 0.42 +0.4
1,133,795 + OH686_05620 0.42 -0.7
1,133,795 + OH686_05620 0.42 -0.2
1,133,795 + OH686_05620 0.42 -0.3
1,133,795 + OH686_05620 0.42 -0.0
1,133,795 + OH686_05620 0.42 +0.6
1,133,795 + OH686_05620 0.42 +0.2
1,133,795 + OH686_05620 0.42 -0.5
1,133,795 + OH686_05620 0.42 -0.1

Or see this region's nucleotide sequence