Experiment: m.b. Nickel (II) chloride 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_1207 and Echvi_1208 are separated by 76 nucleotides Echvi_1208 and Echvi_1209 overlap by 8 nucleotides Echvi_1209 and Echvi_1210 overlap by 41 nucleotides Echvi_1210 and Echvi_1211 overlap by 18 nucleotides
Echvi_1207: Echvi_1207 - Predicted Fe-S-cluster oxidoreductase, at 1,385,123 to 1,385,836
_1207
Echvi_1208: Echvi_1208 - Protein of unknown function (DUF1469)., at 1,385,913 to 1,386,275
_1208
Echvi_1209: Echvi_1209 - hypothetical protein, at 1,386,268 to 1,386,633
_1209
Echvi_1210: Echvi_1210 - phosphoglycerol geranylgeranyltransferase, at 1,386,593 to 1,387,399
_1210
Echvi_1211: Echvi_1211 - Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain, at 1,387,382 to 1,388,311
_1211
Position (kb)
1386
1387
1388 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 1385.620 kb on + strand, within Echvi_1207 at 1385.621 kb on - strand, within Echvi_1207 at 1385.621 kb on - strand, within Echvi_1207 at 1385.661 kb on + strand, within Echvi_1207 at 1385.662 kb on - strand, within Echvi_1207 at 1385.668 kb on - strand, within Echvi_1207 at 1385.708 kb on + strand, within Echvi_1207 at 1385.708 kb on + strand, within Echvi_1207 at 1385.708 kb on + strand, within Echvi_1207 at 1385.709 kb on - strand, within Echvi_1207 at 1385.709 kb on - strand, within Echvi_1207 at 1385.709 kb on - strand, within Echvi_1207 at 1385.709 kb on - strand, within Echvi_1207 at 1385.711 kb on + strand, within Echvi_1207 at 1385.712 kb on - strand, within Echvi_1207 at 1385.712 kb on - strand, within Echvi_1207 at 1385.712 kb on - strand, within Echvi_1207 at 1385.712 kb on - strand, within Echvi_1207 at 1385.775 kb on + strand at 1385.810 kb on + strand at 1385.810 kb on + strand at 1385.811 kb on - strand at 1385.814 kb on - strand at 1385.814 kb on - strand at 1385.861 kb on + strand at 1385.861 kb on + strand at 1385.861 kb on + strand at 1385.862 kb on - strand at 1385.862 kb on - strand at 1385.862 kb on - strand at 1385.862 kb on - strand at 1385.863 kb on + strand at 1385.863 kb on + strand at 1385.863 kb on + strand at 1385.863 kb on + strand at 1385.864 kb on - strand at 1385.864 kb on - strand at 1385.877 kb on + strand at 1385.912 kb on + strand at 1385.921 kb on + strand at 1385.921 kb on + strand at 1385.942 kb on + strand at 1386.097 kb on - strand, within Echvi_1208 at 1386.110 kb on + strand, within Echvi_1208 at 1386.138 kb on + strand, within Echvi_1208 at 1386.139 kb on - strand, within Echvi_1208 at 1386.142 kb on + strand, within Echvi_1208 at 1386.142 kb on + strand, within Echvi_1208 at 1386.142 kb on + strand, within Echvi_1208 at 1386.143 kb on - strand, within Echvi_1208 at 1386.143 kb on - strand, within Echvi_1208 at 1386.143 kb on - strand, within Echvi_1208 at 1386.151 kb on + strand, within Echvi_1208 at 1386.151 kb on + strand, within Echvi_1208 at 1386.152 kb on - strand, within Echvi_1208 at 1386.152 kb on - strand, within Echvi_1208 at 1386.153 kb on + strand, within Echvi_1208 at 1386.154 kb on - strand, within Echvi_1208 at 1386.209 kb on + strand, within Echvi_1208 at 1386.210 kb on - strand, within Echvi_1208 at 1386.273 kb on + strand at 1386.338 kb on + strand, within Echvi_1209 at 1386.393 kb on + strand, within Echvi_1209 at 1386.393 kb on + strand, within Echvi_1209 at 1386.394 kb on - strand, within Echvi_1209 at 1386.394 kb on - strand, within Echvi_1209 at 1386.394 kb on - strand, within Echvi_1209 at 1386.399 kb on + strand, within Echvi_1209 at 1386.400 kb on - strand, within Echvi_1209 at 1386.400 kb on - strand, within Echvi_1209 at 1386.400 kb on - strand, within Echvi_1209 at 1386.493 kb on + strand, within Echvi_1209 at 1386.494 kb on - strand, within Echvi_1209 at 1386.496 kb on - strand, within Echvi_1209 at 1386.496 kb on - strand, within Echvi_1209 at 1386.496 kb on - strand, within Echvi_1209 at 1386.497 kb on + strand, within Echvi_1209 at 1386.498 kb on - strand, within Echvi_1209 at 1386.498 kb on - strand, within Echvi_1209 at 1386.572 kb on + strand, within Echvi_1209 at 1386.582 kb on + strand, within Echvi_1209 at 1386.583 kb on - strand, within Echvi_1209 at 1386.583 kb on - strand, within Echvi_1209 at 1386.583 kb on - strand, within Echvi_1209 at 1386.596 kb on + strand at 1386.596 kb on + strand at 1386.596 kb on + strand at 1386.596 kb on + strand at 1386.655 kb on - strand at 1386.655 kb on - strand at 1386.763 kb on + strand, within Echvi_1210 at 1386.763 kb on + strand, within Echvi_1210 at 1386.764 kb on - strand, within Echvi_1210 at 1386.796 kb on - strand, within Echvi_1210 at 1386.808 kb on + strand, within Echvi_1210 at 1386.809 kb on - strand, within Echvi_1210 at 1387.022 kb on + strand, within Echvi_1210 at 1387.023 kb on - strand, within Echvi_1210 at 1387.024 kb on + strand, within Echvi_1210 at 1387.024 kb on + strand, within Echvi_1210 at 1387.024 kb on + strand, within Echvi_1210 at 1387.024 kb on + strand, within Echvi_1210 at 1387.024 kb on + strand, within Echvi_1210 at 1387.024 kb on + strand, within Echvi_1210 at 1387.024 kb on + strand, within Echvi_1210 at 1387.024 kb on + strand, within Echvi_1210 at 1387.024 kb on + strand, within Echvi_1210 at 1387.024 kb on + strand, within Echvi_1210 at 1387.024 kb on + strand, within Echvi_1210 at 1387.024 kb on + strand, within Echvi_1210 at 1387.024 kb on + strand, within Echvi_1210 at 1387.024 kb on + strand, within Echvi_1210 at 1387.024 kb on + strand, within Echvi_1210 at 1387.024 kb on + strand, within Echvi_1210 at 1387.025 kb on - strand, within Echvi_1210 at 1387.025 kb on - strand, within Echvi_1210 at 1387.025 kb on - strand, within Echvi_1210 at 1387.025 kb on - strand, within Echvi_1210 at 1387.025 kb on - strand, within Echvi_1210 at 1387.025 kb on - strand, within Echvi_1210 at 1387.025 kb on - strand, within Echvi_1210 at 1387.025 kb on - strand, within Echvi_1210 at 1387.025 kb on - strand, within Echvi_1210 at 1387.025 kb on - strand, within Echvi_1210 at 1387.025 kb on - strand, within Echvi_1210 at 1387.025 kb on - strand, within Echvi_1210 at 1387.025 kb on - strand, within Echvi_1210 at 1387.061 kb on + strand, within Echvi_1210 at 1387.062 kb on - strand, within Echvi_1210 at 1387.062 kb on - strand, within Echvi_1210 at 1387.078 kb on - strand, within Echvi_1210 at 1387.093 kb on + strand, within Echvi_1210 at 1387.093 kb on + strand, within Echvi_1210 at 1387.093 kb on + strand, within Echvi_1210 at 1387.094 kb on - strand, within Echvi_1210 at 1387.094 kb on - strand, within Echvi_1210 at 1387.149 kb on - strand, within Echvi_1210 at 1387.225 kb on - strand, within Echvi_1210 at 1387.225 kb on - strand, within Echvi_1210 at 1387.225 kb on - strand, within Echvi_1210 at 1387.225 kb on - strand, within Echvi_1210 at 1387.362 kb on + strand at 1387.362 kb on + strand at 1387.362 kb on + strand at 1387.373 kb on + strand at 1387.394 kb on - strand at 1387.437 kb on + strand at 1387.437 kb on + strand at 1387.438 kb on - strand at 1387.464 kb on + strand at 1387.465 kb on - strand at 1387.465 kb on - strand at 1387.471 kb on + strand at 1387.492 kb on + strand, within Echvi_1211 at 1387.519 kb on + strand, within Echvi_1211 at 1387.522 kb on + strand, within Echvi_1211 at 1387.529 kb on + strand, within Echvi_1211 at 1387.529 kb on + strand, within Echvi_1211 at 1387.566 kb on + strand, within Echvi_1211 at 1387.567 kb on - strand, within Echvi_1211 at 1387.610 kb on + strand, within Echvi_1211 at 1387.611 kb on - strand, within Echvi_1211 at 1387.611 kb on - strand, within Echvi_1211 at 1387.614 kb on + strand, within Echvi_1211 at 1387.614 kb on + strand, within Echvi_1211 at 1387.614 kb on + strand, within Echvi_1211 at 1387.614 kb on + strand, within Echvi_1211 at 1387.614 kb on + strand, within Echvi_1211 at 1387.625 kb on + strand, within Echvi_1211 at 1387.646 kb on + strand, within Echvi_1211 at 1387.646 kb on + strand, within Echvi_1211 at 1387.646 kb on + strand, within Echvi_1211 at 1387.646 kb on + strand, within Echvi_1211 at 1387.646 kb on + strand, within Echvi_1211 at 1387.686 kb on + strand, within Echvi_1211 at 1387.686 kb on + strand, within Echvi_1211 at 1387.726 kb on + strand, within Echvi_1211 at 1387.726 kb on + strand, within Echvi_1211 at 1387.726 kb on + strand, within Echvi_1211 at 1387.778 kb on + strand, within Echvi_1211 at 1387.816 kb on + strand, within Echvi_1211 at 1387.903 kb on + strand, within Echvi_1211 at 1387.999 kb on + strand, within Echvi_1211 at 1387.999 kb on + strand, within Echvi_1211 at 1387.999 kb on + strand, within Echvi_1211 at 1388.000 kb on - strand, within Echvi_1211 at 1388.000 kb on - strand, within Echvi_1211 at 1388.000 kb on - strand, within Echvi_1211 at 1388.000 kb on - strand, within Echvi_1211 at 1388.016 kb on - strand, within Echvi_1211 at 1388.024 kb on + strand, within Echvi_1211 at 1388.025 kb on - strand, within Echvi_1211 at 1388.148 kb on - strand, within Echvi_1211 at 1388.148 kb on - strand, within Echvi_1211 at 1388.172 kb on - strand, within Echvi_1211 at 1388.190 kb on - strand, within Echvi_1211 at 1388.213 kb on + strand, within Echvi_1211 at 1388.213 kb on + strand, within Echvi_1211 at 1388.213 kb on + strand, within Echvi_1211 at 1388.213 kb on + strand, within Echvi_1211 at 1388.214 kb on - strand, within Echvi_1211 at 1388.233 kb on + strand at 1388.233 kb on + strand at 1388.233 kb on - strand at 1388.234 kb on - strand at 1388.234 kb on - strand at 1388.234 kb on - strand at 1388.244 kb on - strand at 1388.250 kb on + strand at 1388.250 kb on + strand at 1388.251 kb on - strand at 1388.269 kb on - strand at 1388.339 kb on - strand at 1388.365 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Nickel (II) chloride 1 mM remove 1,385,620 + Echvi_1207 0.70 +0.4 1,385,621 - Echvi_1207 0.70 -0.6 1,385,621 - Echvi_1207 0.70 -2.1 1,385,661 + Echvi_1207 0.75 -0.4 1,385,662 - Echvi_1207 0.75 -0.2 1,385,668 - Echvi_1207 0.76 +0.6 1,385,708 + Echvi_1207 0.82 +0.2 1,385,708 + Echvi_1207 0.82 -0.3 1,385,708 + Echvi_1207 0.82 +1.1 1,385,709 - Echvi_1207 0.82 +1.3 1,385,709 - Echvi_1207 0.82 +0.6 1,385,709 - Echvi_1207 0.82 +0.2 1,385,709 - Echvi_1207 0.82 -0.1 1,385,711 + Echvi_1207 0.82 +1.0 1,385,712 - Echvi_1207 0.82 -0.5 1,385,712 - Echvi_1207 0.82 +0.1 1,385,712 - Echvi_1207 0.82 -0.4 1,385,712 - Echvi_1207 0.82 +0.1 1,385,775 + +0.4 1,385,810 + +0.3 1,385,810 + +0.2 1,385,811 - +0.4 1,385,814 - +0.5 1,385,814 - -1.2 1,385,861 + -2.1 1,385,861 + +1.6 1,385,861 + +0.2 1,385,862 - -0.7 1,385,862 - +0.7 1,385,862 - -0.7 1,385,862 - +0.9 1,385,863 + +0.2 1,385,863 + -0.3 1,385,863 + -1.4 1,385,863 + -0.7 1,385,864 - -0.6 1,385,864 - +2.9 1,385,877 + -2.5 1,385,912 + +0.8 1,385,921 + -1.5 1,385,921 + -1.5 1,385,942 + +1.1 1,386,097 - Echvi_1208 0.51 -0.8 1,386,110 + Echvi_1208 0.54 -1.5 1,386,138 + Echvi_1208 0.62 -0.7 1,386,139 - Echvi_1208 0.62 +0.0 1,386,142 + Echvi_1208 0.63 -0.3 1,386,142 + Echvi_1208 0.63 +0.3 1,386,142 + Echvi_1208 0.63 -0.9 1,386,143 - Echvi_1208 0.63 +1.0 1,386,143 - Echvi_1208 0.63 +0.5 1,386,143 - Echvi_1208 0.63 -0.2 1,386,151 + Echvi_1208 0.66 -1.7 1,386,151 + Echvi_1208 0.66 +1.0 1,386,152 - Echvi_1208 0.66 +0.6 1,386,152 - Echvi_1208 0.66 -0.9 1,386,153 + Echvi_1208 0.66 +0.7 1,386,154 - Echvi_1208 0.66 -2.7 1,386,209 + Echvi_1208 0.82 +0.4 1,386,210 - Echvi_1208 0.82 +0.2 1,386,273 + -0.0 1,386,338 + Echvi_1209 0.19 -1.7 1,386,393 + Echvi_1209 0.34 -1.0 1,386,393 + Echvi_1209 0.34 -1.1 1,386,394 - Echvi_1209 0.34 +1.1 1,386,394 - Echvi_1209 0.34 -1.4 1,386,394 - Echvi_1209 0.34 +0.1 1,386,399 + Echvi_1209 0.36 -0.9 1,386,400 - Echvi_1209 0.36 -0.4 1,386,400 - Echvi_1209 0.36 -0.1 1,386,400 - Echvi_1209 0.36 +0.5 1,386,493 + Echvi_1209 0.61 -0.7 1,386,494 - Echvi_1209 0.62 -0.1 1,386,496 - Echvi_1209 0.62 +0.0 1,386,496 - Echvi_1209 0.62 +0.6 1,386,496 - Echvi_1209 0.62 +1.0 1,386,497 + Echvi_1209 0.63 +0.3 1,386,498 - Echvi_1209 0.63 +0.0 1,386,498 - Echvi_1209 0.63 -1.0 1,386,572 + Echvi_1209 0.83 +0.7 1,386,582 + Echvi_1209 0.86 -0.7 1,386,583 - Echvi_1209 0.86 +0.1 1,386,583 - Echvi_1209 0.86 +0.0 1,386,583 - Echvi_1209 0.86 +0.3 1,386,596 + +1.8 1,386,596 + -0.2 1,386,596 + +0.0 1,386,596 + -1.1 1,386,655 - -0.2 1,386,655 - -0.7 1,386,763 + Echvi_1210 0.21 -0.1 1,386,763 + Echvi_1210 0.21 -1.6 1,386,764 - Echvi_1210 0.21 +0.4 1,386,796 - Echvi_1210 0.25 -0.3 1,386,808 + Echvi_1210 0.27 -1.0 1,386,809 - Echvi_1210 0.27 -1.2 1,387,022 + Echvi_1210 0.53 +1.8 1,387,023 - Echvi_1210 0.53 -0.4 1,387,024 + Echvi_1210 0.53 -0.4 1,387,024 + Echvi_1210 0.53 +0.8 1,387,024 + Echvi_1210 0.53 -1.1 1,387,024 + Echvi_1210 0.53 -1.1 1,387,024 + Echvi_1210 0.53 +0.4 1,387,024 + Echvi_1210 0.53 -0.3 1,387,024 + Echvi_1210 0.53 -0.4 1,387,024 + Echvi_1210 0.53 -1.2 1,387,024 + Echvi_1210 0.53 -1.4 1,387,024 + Echvi_1210 0.53 -0.4 1,387,024 + Echvi_1210 0.53 +1.4 1,387,024 + Echvi_1210 0.53 -1.2 1,387,024 + Echvi_1210 0.53 -0.5 1,387,024 + Echvi_1210 0.53 -0.4 1,387,024 + Echvi_1210 0.53 -0.9 1,387,024 + Echvi_1210 0.53 -0.2 1,387,025 - Echvi_1210 0.54 -0.8 1,387,025 - Echvi_1210 0.54 -0.3 1,387,025 - Echvi_1210 0.54 -0.3 1,387,025 - Echvi_1210 0.54 +0.7 1,387,025 - Echvi_1210 0.54 -0.7 1,387,025 - Echvi_1210 0.54 -0.3 1,387,025 - Echvi_1210 0.54 -0.2 1,387,025 - Echvi_1210 0.54 +3.0 1,387,025 - Echvi_1210 0.54 +0.0 1,387,025 - Echvi_1210 0.54 +0.5 1,387,025 - Echvi_1210 0.54 +0.1 1,387,025 - Echvi_1210 0.54 -0.8 1,387,025 - Echvi_1210 0.54 +1.3 1,387,061 + Echvi_1210 0.58 +1.0 1,387,062 - Echvi_1210 0.58 -0.5 1,387,062 - Echvi_1210 0.58 -0.1 1,387,078 - Echvi_1210 0.60 +0.7 1,387,093 + Echvi_1210 0.62 +0.8 1,387,093 + Echvi_1210 0.62 -0.7 1,387,093 + Echvi_1210 0.62 -1.1 1,387,094 - Echvi_1210 0.62 +0.3 1,387,094 - Echvi_1210 0.62 -1.7 1,387,149 - Echvi_1210 0.69 -0.4 1,387,225 - Echvi_1210 0.78 -0.8 1,387,225 - Echvi_1210 0.78 +0.3 1,387,225 - Echvi_1210 0.78 +1.7 1,387,225 - Echvi_1210 0.78 -0.7 1,387,362 + -0.5 1,387,362 + -2.5 1,387,362 + -0.4 1,387,373 + -0.6 1,387,394 - -0.2 1,387,437 + -0.7 1,387,437 + +1.0 1,387,438 - -1.2 1,387,464 + -1.1 1,387,465 - -0.2 1,387,465 - -1.7 1,387,471 + -0.9 1,387,492 + Echvi_1211 0.12 -0.5 1,387,519 + Echvi_1211 0.15 -1.7 1,387,522 + Echvi_1211 0.15 +0.0 1,387,529 + Echvi_1211 0.16 -2.8 1,387,529 + Echvi_1211 0.16 +0.0 1,387,566 + Echvi_1211 0.20 -0.5 1,387,567 - Echvi_1211 0.20 -1.7 1,387,610 + Echvi_1211 0.25 +0.4 1,387,611 - Echvi_1211 0.25 -2.4 1,387,611 - Echvi_1211 0.25 -0.4 1,387,614 + Echvi_1211 0.25 -0.2 1,387,614 + Echvi_1211 0.25 +0.4 1,387,614 + Echvi_1211 0.25 -2.0 1,387,614 + Echvi_1211 0.25 +1.2 1,387,614 + Echvi_1211 0.25 -0.2 1,387,625 + Echvi_1211 0.26 +0.1 1,387,646 + Echvi_1211 0.28 -0.3 1,387,646 + Echvi_1211 0.28 -2.5 1,387,646 + Echvi_1211 0.28 +0.2 1,387,646 + Echvi_1211 0.28 -0.7 1,387,646 + Echvi_1211 0.28 -0.9 1,387,686 + Echvi_1211 0.33 -0.2 1,387,686 + Echvi_1211 0.33 -0.7 1,387,726 + Echvi_1211 0.37 -1.0 1,387,726 + Echvi_1211 0.37 -0.2 1,387,726 + Echvi_1211 0.37 -0.1 1,387,778 + Echvi_1211 0.43 -1.0 1,387,816 + Echvi_1211 0.47 -0.3 1,387,903 + Echvi_1211 0.56 +0.2 1,387,999 + Echvi_1211 0.66 -0.1 1,387,999 + Echvi_1211 0.66 +0.0 1,387,999 + Echvi_1211 0.66 -1.3 1,388,000 - Echvi_1211 0.66 -1.0 1,388,000 - Echvi_1211 0.66 -0.9 1,388,000 - Echvi_1211 0.66 -1.9 1,388,000 - Echvi_1211 0.66 -0.2 1,388,016 - Echvi_1211 0.68 -0.4 1,388,024 + Echvi_1211 0.69 +0.6 1,388,025 - Echvi_1211 0.69 -1.4 1,388,148 - Echvi_1211 0.82 -2.7 1,388,148 - Echvi_1211 0.82 -0.6 1,388,172 - Echvi_1211 0.85 +0.0 1,388,190 - Echvi_1211 0.87 -0.3 1,388,213 + Echvi_1211 0.89 -1.2 1,388,213 + Echvi_1211 0.89 -2.1 1,388,213 + Echvi_1211 0.89 -0.8 1,388,213 + Echvi_1211 0.89 +0.1 1,388,214 - Echvi_1211 0.89 +0.6 1,388,233 + -2.3 1,388,233 + -0.1 1,388,233 - -1.2 1,388,234 - +1.6 1,388,234 - +0.8 1,388,234 - -1.7 1,388,244 - -1.3 1,388,250 + -1.1 1,388,250 + -2.0 1,388,251 - +1.4 1,388,269 - -0.5 1,388,339 - -0.7 1,388,365 - +1.3
Or see this region's nucleotide sequence