Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_0697

Experiment: m.b. Nickel (II) chloride 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_0696 and Echvi_0697 are separated by 15 nucleotidesEchvi_0697 and Echvi_0698 are separated by 131 nucleotides Echvi_0696: Echvi_0696 - galactokinase, at 786,406 to 787,557 _0696 Echvi_0697: Echvi_0697 - Aldose 1-epimerase (EC 5.1.3.3) (from data), at 787,573 to 788,652 _0697 Echvi_0698: Echvi_0698 - Transcriptional regulators, at 788,784 to 789,800 _0698 Position (kb) 787 788 789Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 786.643 kb on + strand, within Echvi_0696at 786.671 kb on + strand, within Echvi_0696at 786.671 kb on + strand, within Echvi_0696at 786.868 kb on + strand, within Echvi_0696at 786.869 kb on - strand, within Echvi_0696at 787.289 kb on + strand, within Echvi_0696at 787.543 kb on - strandat 787.566 kb on - strandat 787.566 kb on - strandat 787.566 kb on - strandat 787.566 kb on - strandat 787.574 kb on + strandat 787.575 kb on - strandat 787.578 kb on + strandat 787.579 kb on - strandat 787.634 kb on - strandat 787.637 kb on - strandat 787.760 kb on + strand, within Echvi_0697at 787.760 kb on + strand, within Echvi_0697at 787.761 kb on - strand, within Echvi_0697at 787.882 kb on + strand, within Echvi_0697at 787.882 kb on + strand, within Echvi_0697at 787.883 kb on - strand, within Echvi_0697at 787.958 kb on - strand, within Echvi_0697at 787.983 kb on + strand, within Echvi_0697at 788.004 kb on + strand, within Echvi_0697at 788.005 kb on - strand, within Echvi_0697at 788.005 kb on - strand, within Echvi_0697at 788.006 kb on + strand, within Echvi_0697at 788.006 kb on + strand, within Echvi_0697at 788.006 kb on + strand, within Echvi_0697at 788.006 kb on + strand, within Echvi_0697at 788.007 kb on - strand, within Echvi_0697at 788.007 kb on - strand, within Echvi_0697at 788.007 kb on - strand, within Echvi_0697at 788.070 kb on + strand, within Echvi_0697at 788.076 kb on - strand, within Echvi_0697at 788.160 kb on + strand, within Echvi_0697at 788.192 kb on + strand, within Echvi_0697at 788.311 kb on - strand, within Echvi_0697at 788.314 kb on + strand, within Echvi_0697at 788.314 kb on + strand, within Echvi_0697at 788.315 kb on - strand, within Echvi_0697at 788.328 kb on - strand, within Echvi_0697at 788.370 kb on + strand, within Echvi_0697at 788.430 kb on + strand, within Echvi_0697at 788.430 kb on + strand, within Echvi_0697at 788.431 kb on - strand, within Echvi_0697at 788.432 kb on + strand, within Echvi_0697at 788.432 kb on + strand, within Echvi_0697at 788.441 kb on + strand, within Echvi_0697at 788.441 kb on + strand, within Echvi_0697at 788.441 kb on + strand, within Echvi_0697at 788.441 kb on + strand, within Echvi_0697at 788.441 kb on + strand, within Echvi_0697at 788.441 kb on + strand, within Echvi_0697at 788.441 kb on + strand, within Echvi_0697at 788.442 kb on - strand, within Echvi_0697at 788.442 kb on - strand, within Echvi_0697at 788.442 kb on - strand, within Echvi_0697at 788.442 kb on - strand, within Echvi_0697at 788.442 kb on - strand, within Echvi_0697at 788.519 kb on + strand, within Echvi_0697at 788.519 kb on + strand, within Echvi_0697at 788.520 kb on - strand, within Echvi_0697at 788.520 kb on - strand, within Echvi_0697at 788.520 kb on - strand, within Echvi_0697at 788.566 kb on + strandat 788.657 kb on - strandat 788.666 kb on + strandat 788.667 kb on - strandat 788.689 kb on + strandat 788.689 kb on + strandat 788.690 kb on - strandat 788.690 kb on - strandat 788.690 kb on - strandat 788.712 kb on - strandat 788.785 kb on + strandat 788.819 kb on + strandat 788.850 kb on - strandat 788.960 kb on + strand, within Echvi_0698at 788.960 kb on + strand, within Echvi_0698at 789.134 kb on + strand, within Echvi_0698at 789.217 kb on + strand, within Echvi_0698at 789.217 kb on + strand, within Echvi_0698at 789.217 kb on + strand, within Echvi_0698at 789.217 kb on + strand, within Echvi_0698at 789.217 kb on + strand, within Echvi_0698at 789.217 kb on + strand, within Echvi_0698at 789.217 kb on + strand, within Echvi_0698at 789.218 kb on - strand, within Echvi_0698at 789.218 kb on - strand, within Echvi_0698at 789.218 kb on - strand, within Echvi_0698at 789.218 kb on - strand, within Echvi_0698at 789.218 kb on - strand, within Echvi_0698at 789.218 kb on - strand, within Echvi_0698at 789.218 kb on - strand, within Echvi_0698at 789.218 kb on - strand, within Echvi_0698at 789.239 kb on + strand, within Echvi_0698at 789.246 kb on + strand, within Echvi_0698at 789.287 kb on + strand, within Echvi_0698at 789.289 kb on + strand, within Echvi_0698at 789.290 kb on - strand, within Echvi_0698at 789.520 kb on + strand, within Echvi_0698at 789.617 kb on + strand, within Echvi_0698

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Nickel (II) chloride 1 mM
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786,643 + Echvi_0696 0.21 -0.6
786,671 + Echvi_0696 0.23 -1.5
786,671 + Echvi_0696 0.23 -0.0
786,868 + Echvi_0696 0.40 -2.7
786,869 - Echvi_0696 0.40 -1.2
787,289 + Echvi_0696 0.77 -1.2
787,543 - -0.4
787,566 - +0.5
787,566 - -0.3
787,566 - +0.1
787,566 - -0.1
787,574 + -0.6
787,575 - +0.3
787,578 + +1.6
787,579 - -0.0
787,634 - -0.4
787,637 - +0.3
787,760 + Echvi_0697 0.17 -1.4
787,760 + Echvi_0697 0.17 -0.5
787,761 - Echvi_0697 0.17 +0.8
787,882 + Echvi_0697 0.29 -0.0
787,882 + Echvi_0697 0.29 -0.7
787,883 - Echvi_0697 0.29 +0.6
787,958 - Echvi_0697 0.36 +0.5
787,983 + Echvi_0697 0.38 -0.8
788,004 + Echvi_0697 0.40 +0.3
788,005 - Echvi_0697 0.40 +1.8
788,005 - Echvi_0697 0.40 -0.9
788,006 + Echvi_0697 0.40 +0.3
788,006 + Echvi_0697 0.40 -2.7
788,006 + Echvi_0697 0.40 -0.4
788,006 + Echvi_0697 0.40 -0.4
788,007 - Echvi_0697 0.40 -0.0
788,007 - Echvi_0697 0.40 +0.9
788,007 - Echvi_0697 0.40 -0.1
788,070 + Echvi_0697 0.46 -0.9
788,076 - Echvi_0697 0.47 -0.1
788,160 + Echvi_0697 0.54 -0.7
788,192 + Echvi_0697 0.57 +0.3
788,311 - Echvi_0697 0.68 -0.5
788,314 + Echvi_0697 0.69 +0.3
788,314 + Echvi_0697 0.69 +0.3
788,315 - Echvi_0697 0.69 -0.8
788,328 - Echvi_0697 0.70 +0.1
788,370 + Echvi_0697 0.74 -1.2
788,430 + Echvi_0697 0.79 -0.6
788,430 + Echvi_0697 0.79 -0.0
788,431 - Echvi_0697 0.79 +0.3
788,432 + Echvi_0697 0.80 -1.1
788,432 + Echvi_0697 0.80 +0.8
788,441 + Echvi_0697 0.80 -0.8
788,441 + Echvi_0697 0.80 -0.6
788,441 + Echvi_0697 0.80 +0.2
788,441 + Echvi_0697 0.80 -0.2
788,441 + Echvi_0697 0.80 +0.2
788,441 + Echvi_0697 0.80 +0.6
788,441 + Echvi_0697 0.80 -0.6
788,442 - Echvi_0697 0.80 -0.0
788,442 - Echvi_0697 0.80 -0.4
788,442 - Echvi_0697 0.80 +0.6
788,442 - Echvi_0697 0.80 -0.0
788,442 - Echvi_0697 0.80 -0.1
788,519 + Echvi_0697 0.88 -0.4
788,519 + Echvi_0697 0.88 -0.1
788,520 - Echvi_0697 0.88 -0.4
788,520 - Echvi_0697 0.88 -2.4
788,520 - Echvi_0697 0.88 +0.9
788,566 + -0.2
788,657 - +1.6
788,666 + -1.1
788,667 - +0.5
788,689 + -0.2
788,689 + -3.0
788,690 - -0.9
788,690 - -1.7
788,690 - -1.4
788,712 - -0.5
788,785 + -0.3
788,819 + +1.0
788,850 - -0.1
788,960 + Echvi_0698 0.17 -0.5
788,960 + Echvi_0698 0.17 -0.2
789,134 + Echvi_0698 0.34 -0.1
789,217 + Echvi_0698 0.43 +0.7
789,217 + Echvi_0698 0.43 -1.2
789,217 + Echvi_0698 0.43 +0.2
789,217 + Echvi_0698 0.43 -1.1
789,217 + Echvi_0698 0.43 -1.5
789,217 + Echvi_0698 0.43 -0.9
789,217 + Echvi_0698 0.43 +0.3
789,218 - Echvi_0698 0.43 +1.8
789,218 - Echvi_0698 0.43 -1.1
789,218 - Echvi_0698 0.43 +0.2
789,218 - Echvi_0698 0.43 -1.7
789,218 - Echvi_0698 0.43 +0.5
789,218 - Echvi_0698 0.43 -0.1
789,218 - Echvi_0698 0.43 +0.0
789,218 - Echvi_0698 0.43 -1.3
789,239 + Echvi_0698 0.45 +0.8
789,246 + Echvi_0698 0.45 -0.6
789,287 + Echvi_0698 0.49 -0.1
789,289 + Echvi_0698 0.50 +1.6
789,290 - Echvi_0698 0.50 +0.1
789,520 + Echvi_0698 0.72 -0.8
789,617 + Echvi_0698 0.82 -0.5

Or see this region's nucleotide sequence