Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_0584

Experiment: m.b. Nickel (II) chloride 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_0583 and Echvi_0584 are separated by 90 nucleotidesEchvi_0584 and Echvi_0585 are separated by 79 nucleotides Echvi_0583: Echvi_0583 - Pseudouridylate synthases, 23S RNA-specific, at 660,377 to 661,111 _0583 Echvi_0584: Echvi_0584 - peptide chain release factor 3, at 661,202 to 662,815 _0584 Echvi_0585: Echvi_0585 - Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase., at 662,895 to 664,133 _0585 Position (kb) 661 662 663Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 660.221 kb on - strandat 660.334 kb on - strandat 660.334 kb on - strandat 660.385 kb on + strandat 660.391 kb on + strandat 660.419 kb on + strandat 660.420 kb on - strandat 660.438 kb on + strandat 660.480 kb on + strand, within Echvi_0583at 660.481 kb on - strand, within Echvi_0583at 660.570 kb on + strand, within Echvi_0583at 660.650 kb on + strand, within Echvi_0583at 660.693 kb on + strand, within Echvi_0583at 660.713 kb on - strand, within Echvi_0583at 660.735 kb on + strand, within Echvi_0583at 660.736 kb on - strand, within Echvi_0583at 660.736 kb on - strand, within Echvi_0583at 660.775 kb on - strand, within Echvi_0583at 660.829 kb on - strand, within Echvi_0583at 660.836 kb on - strand, within Echvi_0583at 660.854 kb on - strand, within Echvi_0583at 661.012 kb on + strand, within Echvi_0583at 661.083 kb on + strandat 661.084 kb on - strandat 661.084 kb on - strandat 661.084 kb on - strandat 661.085 kb on + strandat 661.086 kb on - strandat 661.086 kb on - strandat 661.086 kb on - strandat 661.086 kb on - strandat 661.165 kb on + strandat 661.196 kb on - strandat 661.196 kb on - strandat 661.217 kb on - strandat 661.294 kb on + strandat 661.294 kb on + strandat 661.294 kb on + strandat 661.294 kb on + strandat 661.295 kb on - strandat 661.304 kb on - strandat 661.308 kb on + strandat 661.308 kb on + strandat 661.385 kb on - strand, within Echvi_0584at 661.386 kb on + strand, within Echvi_0584at 661.386 kb on + strand, within Echvi_0584at 661.386 kb on + strand, within Echvi_0584at 661.386 kb on + strand, within Echvi_0584at 661.423 kb on - strand, within Echvi_0584at 661.507 kb on + strand, within Echvi_0584at 661.535 kb on + strand, within Echvi_0584at 661.582 kb on + strand, within Echvi_0584at 661.685 kb on - strand, within Echvi_0584at 661.690 kb on - strand, within Echvi_0584at 661.690 kb on - strand, within Echvi_0584at 661.690 kb on - strand, within Echvi_0584at 661.703 kb on - strand, within Echvi_0584at 661.800 kb on + strand, within Echvi_0584at 661.801 kb on - strand, within Echvi_0584at 661.873 kb on + strand, within Echvi_0584at 661.910 kb on - strand, within Echvi_0584at 661.997 kb on + strand, within Echvi_0584at 661.998 kb on - strand, within Echvi_0584at 662.055 kb on + strand, within Echvi_0584at 662.055 kb on + strand, within Echvi_0584at 662.055 kb on + strand, within Echvi_0584at 662.125 kb on + strandat 662.126 kb on - strand, within Echvi_0584at 662.126 kb on - strand, within Echvi_0584at 662.236 kb on - strand, within Echvi_0584at 662.243 kb on - strand, within Echvi_0584at 662.299 kb on + strand, within Echvi_0584at 662.370 kb on - strand, within Echvi_0584at 662.497 kb on + strand, within Echvi_0584at 662.498 kb on - strand, within Echvi_0584at 662.498 kb on - strand, within Echvi_0584at 662.545 kb on + strand, within Echvi_0584at 662.546 kb on - strand, within Echvi_0584at 662.556 kb on + strand, within Echvi_0584at 662.556 kb on + strand, within Echvi_0584at 662.557 kb on - strand, within Echvi_0584at 662.710 kb on + strandat 662.710 kb on + strandat 662.711 kb on - strandat 662.800 kb on + strandat 662.820 kb on - strandat 662.827 kb on + strandat 663.018 kb on - strandat 663.114 kb on - strand, within Echvi_0585at 663.144 kb on + strand, within Echvi_0585at 663.145 kb on - strand, within Echvi_0585at 663.182 kb on + strand, within Echvi_0585at 663.182 kb on + strand, within Echvi_0585at 663.186 kb on - strand, within Echvi_0585at 663.192 kb on + strand, within Echvi_0585at 663.339 kb on + strand, within Echvi_0585at 663.339 kb on + strand, within Echvi_0585at 663.370 kb on + strand, within Echvi_0585at 663.371 kb on - strand, within Echvi_0585at 663.413 kb on + strand, within Echvi_0585at 663.414 kb on - strand, within Echvi_0585at 663.546 kb on + strand, within Echvi_0585at 663.547 kb on - strand, within Echvi_0585at 663.569 kb on + strand, within Echvi_0585at 663.569 kb on + strand, within Echvi_0585at 663.570 kb on - strand, within Echvi_0585at 663.570 kb on - strand, within Echvi_0585at 663.570 kb on - strand, within Echvi_0585at 663.667 kb on + strand, within Echvi_0585at 663.667 kb on + strand, within Echvi_0585at 663.667 kb on + strand, within Echvi_0585at 663.667 kb on + strand, within Echvi_0585at 663.668 kb on - strand, within Echvi_0585at 663.677 kb on - strand, within Echvi_0585at 663.709 kb on + strand, within Echvi_0585at 663.710 kb on - strand, within Echvi_0585at 663.712 kb on + strand, within Echvi_0585at 663.712 kb on + strand, within Echvi_0585at 663.748 kb on + strand, within Echvi_0585at 663.792 kb on + strand, within Echvi_0585

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Nickel (II) chloride 1 mM
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660,221 - -0.7
660,334 - -0.9
660,334 - +0.1
660,385 + -0.3
660,391 + +1.2
660,419 + -0.7
660,420 - +2.8
660,438 + +1.7
660,480 + Echvi_0583 0.14 +0.9
660,481 - Echvi_0583 0.14 -0.1
660,570 + Echvi_0583 0.26 +1.6
660,650 + Echvi_0583 0.37 +0.5
660,693 + Echvi_0583 0.43 -0.8
660,713 - Echvi_0583 0.46 +1.2
660,735 + Echvi_0583 0.49 +0.3
660,736 - Echvi_0583 0.49 -0.1
660,736 - Echvi_0583 0.49 -0.6
660,775 - Echvi_0583 0.54 +0.2
660,829 - Echvi_0583 0.61 +0.4
660,836 - Echvi_0583 0.62 +0.5
660,854 - Echvi_0583 0.65 -0.8
661,012 + Echvi_0583 0.86 -0.5
661,083 + +0.7
661,084 - +0.1
661,084 - +0.0
661,084 - -0.3
661,085 + -0.7
661,086 - -1.0
661,086 - -0.0
661,086 - -0.3
661,086 - +0.8
661,165 + -0.2
661,196 - -0.2
661,196 - -0.4
661,217 - -1.3
661,294 + +0.2
661,294 + -1.1
661,294 + -2.3
661,294 + +0.2
661,295 - +0.2
661,304 - -0.2
661,308 + -1.4
661,308 + -0.9
661,385 - Echvi_0584 0.11 +0.1
661,386 + Echvi_0584 0.11 +0.5
661,386 + Echvi_0584 0.11 -0.6
661,386 + Echvi_0584 0.11 -0.0
661,386 + Echvi_0584 0.11 +0.3
661,423 - Echvi_0584 0.14 -0.8
661,507 + Echvi_0584 0.19 +0.4
661,535 + Echvi_0584 0.21 -2.8
661,582 + Echvi_0584 0.24 -2.1
661,685 - Echvi_0584 0.30 +1.1
661,690 - Echvi_0584 0.30 -0.0
661,690 - Echvi_0584 0.30 +0.3
661,690 - Echvi_0584 0.30 +0.3
661,703 - Echvi_0584 0.31 +0.0
661,800 + Echvi_0584 0.37 +0.2
661,801 - Echvi_0584 0.37 +0.1
661,873 + Echvi_0584 0.42 -1.4
661,910 - Echvi_0584 0.44 -1.0
661,997 + Echvi_0584 0.49 +0.3
661,998 - Echvi_0584 0.49 -1.5
662,055 + Echvi_0584 0.53 +0.6
662,055 + Echvi_0584 0.53 -1.0
662,055 + Echvi_0584 0.53 +1.2
662,125 + +0.6
662,126 - Echvi_0584 0.57 -2.2
662,126 - Echvi_0584 0.57 +1.2
662,236 - Echvi_0584 0.64 +0.8
662,243 - Echvi_0584 0.64 +1.3
662,299 + Echvi_0584 0.68 -0.9
662,370 - Echvi_0584 0.72 -0.3
662,497 + Echvi_0584 0.80 -0.8
662,498 - Echvi_0584 0.80 -1.7
662,498 - Echvi_0584 0.80 -0.0
662,545 + Echvi_0584 0.83 -2.9
662,546 - Echvi_0584 0.83 -0.1
662,556 + Echvi_0584 0.84 +0.8
662,556 + Echvi_0584 0.84 -0.6
662,557 - Echvi_0584 0.84 -1.1
662,710 + +0.5
662,710 + -0.7
662,711 - -1.0
662,800 + -0.1
662,820 - -1.1
662,827 + -0.4
663,018 - -1.9
663,114 - Echvi_0585 0.18 +0.7
663,144 + Echvi_0585 0.20 +1.9
663,145 - Echvi_0585 0.20 -0.4
663,182 + Echvi_0585 0.23 +0.7
663,182 + Echvi_0585 0.23 +0.3
663,186 - Echvi_0585 0.23 -0.7
663,192 + Echvi_0585 0.24 -1.0
663,339 + Echvi_0585 0.36 -1.1
663,339 + Echvi_0585 0.36 -1.5
663,370 + Echvi_0585 0.38 +0.4
663,371 - Echvi_0585 0.38 +1.5
663,413 + Echvi_0585 0.42 +1.4
663,414 - Echvi_0585 0.42 -0.9
663,546 + Echvi_0585 0.53 +0.7
663,547 - Echvi_0585 0.53 +1.4
663,569 + Echvi_0585 0.54 +0.1
663,569 + Echvi_0585 0.54 -1.6
663,570 - Echvi_0585 0.54 +0.4
663,570 - Echvi_0585 0.54 -1.0
663,570 - Echvi_0585 0.54 -0.6
663,667 + Echvi_0585 0.62 -1.0
663,667 + Echvi_0585 0.62 +0.8
663,667 + Echvi_0585 0.62 +0.3
663,667 + Echvi_0585 0.62 +1.4
663,668 - Echvi_0585 0.62 -1.5
663,677 - Echvi_0585 0.63 -0.3
663,709 + Echvi_0585 0.66 +0.2
663,710 - Echvi_0585 0.66 -1.2
663,712 + Echvi_0585 0.66 +0.2
663,712 + Echvi_0585 0.66 -0.9
663,748 + Echvi_0585 0.69 +0.9
663,792 + Echvi_0585 0.72 -2.7

Or see this region's nucleotide sequence