Experiment: Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_4413 and EX28DRAFT_4414 are separated by 147 nucleotides EX28DRAFT_4414 and EX28DRAFT_4415 are separated by 83 nucleotides
EX28DRAFT_4413: EX28DRAFT_4413 - 5,10-methylenetetrahydrofolate reductase, prokaryotic form, at 77,482 to 78,369
_4413
EX28DRAFT_4414: EX28DRAFT_4414 - catalase/peroxidase HPI, at 78,517 to 80,697
_4414
EX28DRAFT_4415: EX28DRAFT_4415 - Glycerol dehydrogenase and related enzymes, at 80,781 to 81,884
_4415
Position (kb) 78
79
80
81 Strain fitness (log2 ratio) -2
-1
0
1
2 at 77.625 kb on + strand, within EX28DRAFT_4413 at 77.660 kb on - strand, within EX28DRAFT_4413 at 77.721 kb on + strand, within EX28DRAFT_4413 at 77.798 kb on - strand, within EX28DRAFT_4413 at 77.821 kb on - strand, within EX28DRAFT_4413 at 77.821 kb on - strand, within EX28DRAFT_4413 at 77.872 kb on + strand, within EX28DRAFT_4413 at 77.872 kb on + strand, within EX28DRAFT_4413 at 77.872 kb on + strand, within EX28DRAFT_4413 at 77.872 kb on + strand, within EX28DRAFT_4413 at 77.872 kb on + strand, within EX28DRAFT_4413 at 77.872 kb on + strand, within EX28DRAFT_4413 at 77.873 kb on - strand, within EX28DRAFT_4413 at 77.873 kb on - strand, within EX28DRAFT_4413 at 77.873 kb on - strand, within EX28DRAFT_4413 at 77.873 kb on - strand, within EX28DRAFT_4413 at 77.873 kb on - strand, within EX28DRAFT_4413 at 77.873 kb on - strand, within EX28DRAFT_4413 at 77.873 kb on - strand, within EX28DRAFT_4413 at 78.052 kb on + strand, within EX28DRAFT_4413 at 78.053 kb on - strand, within EX28DRAFT_4413 at 78.053 kb on - strand, within EX28DRAFT_4413 at 78.126 kb on + strand, within EX28DRAFT_4413 at 78.127 kb on - strand, within EX28DRAFT_4413 at 78.156 kb on + strand, within EX28DRAFT_4413 at 78.247 kb on - strand, within EX28DRAFT_4413 at 78.304 kb on + strand at 78.305 kb on - strand at 78.305 kb on - strand at 78.305 kb on - strand at 78.307 kb on - strand at 78.331 kb on + strand at 78.346 kb on - strand at 78.346 kb on - strand at 78.371 kb on - strand at 78.371 kb on - strand at 78.371 kb on - strand at 78.371 kb on - strand at 78.429 kb on + strand at 78.459 kb on - strand at 78.460 kb on + strand at 78.465 kb on + strand at 78.466 kb on - strand at 78.466 kb on - strand at 78.471 kb on + strand at 78.479 kb on + strand at 78.479 kb on + strand at 78.479 kb on + strand at 78.479 kb on + strand at 78.480 kb on - strand at 78.480 kb on - strand at 78.480 kb on - strand at 78.480 kb on - strand at 78.480 kb on - strand at 78.480 kb on - strand at 78.482 kb on - strand at 78.493 kb on - strand at 78.493 kb on - strand at 78.501 kb on - strand at 78.501 kb on - strand at 78.631 kb on - strand at 78.727 kb on + strand at 78.727 kb on + strand at 78.847 kb on + strand, within EX28DRAFT_4414 at 78.963 kb on + strand, within EX28DRAFT_4414 at 78.974 kb on - strand, within EX28DRAFT_4414 at 79.192 kb on + strand, within EX28DRAFT_4414 at 79.193 kb on - strand, within EX28DRAFT_4414 at 79.193 kb on - strand, within EX28DRAFT_4414 at 79.193 kb on - strand, within EX28DRAFT_4414 at 79.498 kb on + strand, within EX28DRAFT_4414 at 79.498 kb on + strand, within EX28DRAFT_4414 at 79.498 kb on + strand, within EX28DRAFT_4414 at 79.523 kb on - strand, within EX28DRAFT_4414 at 79.629 kb on + strand, within EX28DRAFT_4414 at 79.629 kb on + strand, within EX28DRAFT_4414 at 79.629 kb on + strand, within EX28DRAFT_4414 at 79.630 kb on - strand, within EX28DRAFT_4414 at 79.630 kb on - strand, within EX28DRAFT_4414 at 79.630 kb on - strand, within EX28DRAFT_4414 at 79.632 kb on + strand, within EX28DRAFT_4414 at 79.633 kb on - strand, within EX28DRAFT_4414 at 79.633 kb on - strand, within EX28DRAFT_4414 at 79.741 kb on + strand, within EX28DRAFT_4414 at 80.493 kb on + strand at 80.493 kb on + strand at 80.494 kb on - strand at 80.575 kb on - strand at 80.605 kb on + strand at 80.605 kb on + strand at 80.606 kb on - strand at 80.606 kb on - strand at 80.733 kb on + strand at 80.734 kb on - strand at 80.778 kb on + strand at 80.783 kb on - strand at 80.839 kb on + strand at 80.879 kb on + strand at 80.879 kb on + strand at 80.880 kb on - strand at 81.006 kb on + strand, within EX28DRAFT_4415 at 81.007 kb on - strand, within EX28DRAFT_4415 at 81.007 kb on - strand, within EX28DRAFT_4415 at 81.076 kb on + strand, within EX28DRAFT_4415 at 81.077 kb on - strand, within EX28DRAFT_4415 at 81.119 kb on + strand, within EX28DRAFT_4415 at 81.119 kb on + strand, within EX28DRAFT_4415 at 81.120 kb on - strand, within EX28DRAFT_4415 at 81.169 kb on + strand, within EX28DRAFT_4415 at 81.170 kb on - strand, within EX28DRAFT_4415 at 81.173 kb on + strand, within EX28DRAFT_4415 at 81.299 kb on + strand, within EX28DRAFT_4415 at 81.426 kb on - strand, within EX28DRAFT_4415 at 81.548 kb on + strand, within EX28DRAFT_4415 at 81.567 kb on - strand, within EX28DRAFT_4415 at 81.603 kb on - strand, within EX28DRAFT_4415
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days remove 77,625 + EX28DRAFT_4413 0.16 -1.5 77,660 - EX28DRAFT_4413 0.20 -1.6 77,721 + EX28DRAFT_4413 0.27 -0.6 77,798 - EX28DRAFT_4413 0.36 +0.3 77,821 - EX28DRAFT_4413 0.38 -0.9 77,821 - EX28DRAFT_4413 0.38 -0.4 77,872 + EX28DRAFT_4413 0.44 -1.6 77,872 + EX28DRAFT_4413 0.44 -0.8 77,872 + EX28DRAFT_4413 0.44 -0.8 77,872 + EX28DRAFT_4413 0.44 +0.7 77,872 + EX28DRAFT_4413 0.44 -0.5 77,872 + EX28DRAFT_4413 0.44 -1.0 77,873 - EX28DRAFT_4413 0.44 -1.4 77,873 - EX28DRAFT_4413 0.44 -0.6 77,873 - EX28DRAFT_4413 0.44 -0.5 77,873 - EX28DRAFT_4413 0.44 +0.2 77,873 - EX28DRAFT_4413 0.44 -1.0 77,873 - EX28DRAFT_4413 0.44 -0.7 77,873 - EX28DRAFT_4413 0.44 -0.6 78,052 + EX28DRAFT_4413 0.64 -0.3 78,053 - EX28DRAFT_4413 0.64 -0.8 78,053 - EX28DRAFT_4413 0.64 -0.5 78,126 + EX28DRAFT_4413 0.73 -1.1 78,127 - EX28DRAFT_4413 0.73 -1.4 78,156 + EX28DRAFT_4413 0.76 -1.3 78,247 - EX28DRAFT_4413 0.86 -0.6 78,304 + -0.6 78,305 - -1.3 78,305 - -1.4 78,305 - +0.2 78,307 - -1.8 78,331 + -0.5 78,346 - -0.0 78,346 - -0.8 78,371 - -0.2 78,371 - +0.4 78,371 - +1.2 78,371 - +0.6 78,429 + -0.4 78,459 - -0.6 78,460 + +0.1 78,465 + +0.2 78,466 - -0.3 78,466 - +0.8 78,471 + -0.5 78,479 + +0.2 78,479 + -0.2 78,479 + +0.5 78,479 + +1.8 78,480 - -0.9 78,480 - +0.6 78,480 - -1.3 78,480 - -0.5 78,480 - -1.1 78,480 - -0.1 78,482 - +0.0 78,493 - -0.1 78,493 - -0.7 78,501 - -0.4 78,501 - -0.3 78,631 - +0.1 78,727 + +1.0 78,727 + +0.4 78,847 + EX28DRAFT_4414 0.15 +2.2 78,963 + EX28DRAFT_4414 0.20 +0.2 78,974 - EX28DRAFT_4414 0.21 +0.6 79,192 + EX28DRAFT_4414 0.31 -1.5 79,193 - EX28DRAFT_4414 0.31 -0.5 79,193 - EX28DRAFT_4414 0.31 -0.1 79,193 - EX28DRAFT_4414 0.31 -0.4 79,498 + EX28DRAFT_4414 0.45 -0.0 79,498 + EX28DRAFT_4414 0.45 -2.4 79,498 + EX28DRAFT_4414 0.45 +0.1 79,523 - EX28DRAFT_4414 0.46 -0.3 79,629 + EX28DRAFT_4414 0.51 +0.3 79,629 + EX28DRAFT_4414 0.51 +0.4 79,629 + EX28DRAFT_4414 0.51 +0.1 79,630 - EX28DRAFT_4414 0.51 -0.3 79,630 - EX28DRAFT_4414 0.51 -0.6 79,630 - EX28DRAFT_4414 0.51 +1.9 79,632 + EX28DRAFT_4414 0.51 +0.6 79,633 - EX28DRAFT_4414 0.51 +0.1 79,633 - EX28DRAFT_4414 0.51 +0.5 79,741 + EX28DRAFT_4414 0.56 -0.0 80,493 + +0.7 80,493 + -0.3 80,494 - -0.0 80,575 - -0.4 80,605 + -0.1 80,605 + +0.2 80,606 - -0.4 80,606 - +0.2 80,733 + -0.3 80,734 - +0.0 80,778 + -2.4 80,783 - +0.1 80,839 + +0.3 80,879 + -0.4 80,879 + -0.8 80,880 - +0.4 81,006 + EX28DRAFT_4415 0.20 +0.9 81,007 - EX28DRAFT_4415 0.20 +0.4 81,007 - EX28DRAFT_4415 0.20 +0.1 81,076 + EX28DRAFT_4415 0.27 +1.2 81,077 - EX28DRAFT_4415 0.27 +0.3 81,119 + EX28DRAFT_4415 0.31 -0.9 81,119 + EX28DRAFT_4415 0.31 +1.1 81,120 - EX28DRAFT_4415 0.31 +0.5 81,169 + EX28DRAFT_4415 0.35 -0.9 81,170 - EX28DRAFT_4415 0.35 -0.3 81,173 + EX28DRAFT_4415 0.36 -0.8 81,299 + EX28DRAFT_4415 0.47 +0.2 81,426 - EX28DRAFT_4415 0.58 +0.3 81,548 + EX28DRAFT_4415 0.69 -0.8 81,567 - EX28DRAFT_4415 0.71 +0.4 81,603 - EX28DRAFT_4415 0.74 +0.1
Or see this region's nucleotide sequence