Experiment: Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_4393 and EX28DRAFT_4394 are separated by 48 nucleotides EX28DRAFT_4394 and EX28DRAFT_4395 are separated by 111 nucleotides EX28DRAFT_4395 and EX28DRAFT_4396 are separated by 112 nucleotides
EX28DRAFT_4393: EX28DRAFT_4393 - Di- and tricarboxylate transporters, at 56,150 to 57,454
_4393
EX28DRAFT_4394: EX28DRAFT_4394 - triosephosphate isomerase (EC 5.3.1.1), at 57,503 to 58,270
_4394
EX28DRAFT_4395: EX28DRAFT_4395 - Protein of unknown function (DUF1454), at 58,382 to 58,978
_4395
EX28DRAFT_4396: EX28DRAFT_4396 - Predicted membrane protein, at 59,091 to 59,510
_4396
Position (kb) 57
58
59 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 56.684 kb on + strand, within EX28DRAFT_4393 at 56.702 kb on + strand, within EX28DRAFT_4393 at 56.703 kb on - strand, within EX28DRAFT_4393 at 57.016 kb on + strand, within EX28DRAFT_4393 at 57.017 kb on - strand, within EX28DRAFT_4393 at 57.081 kb on + strand, within EX28DRAFT_4393 at 57.082 kb on - strand, within EX28DRAFT_4393 at 57.103 kb on + strand, within EX28DRAFT_4393 at 57.103 kb on + strand, within EX28DRAFT_4393 at 57.155 kb on - strand, within EX28DRAFT_4393 at 57.178 kb on + strand, within EX28DRAFT_4393 at 57.178 kb on + strand, within EX28DRAFT_4393 at 57.179 kb on - strand, within EX28DRAFT_4393 at 57.206 kb on + strand, within EX28DRAFT_4393 at 57.398 kb on + strand at 57.398 kb on + strand at 57.398 kb on + strand at 57.398 kb on + strand at 57.399 kb on - strand at 57.399 kb on - strand at 57.423 kb on - strand at 57.441 kb on + strand at 57.441 kb on + strand at 57.453 kb on - strand at 57.464 kb on - strand at 57.505 kb on - strand at 58.409 kb on + strand at 58.501 kb on - strand, within EX28DRAFT_4395 at 58.501 kb on - strand, within EX28DRAFT_4395 at 58.576 kb on + strand, within EX28DRAFT_4395 at 58.602 kb on + strand, within EX28DRAFT_4395 at 58.603 kb on - strand, within EX28DRAFT_4395 at 58.603 kb on - strand, within EX28DRAFT_4395 at 58.706 kb on - strand, within EX28DRAFT_4395 at 59.012 kb on - strand at 59.070 kb on + strand at 59.070 kb on + strand at 59.071 kb on - strand at 59.078 kb on + strand at 59.078 kb on + strand at 59.078 kb on + strand at 59.088 kb on + strand at 59.088 kb on + strand at 59.088 kb on + strand at 59.088 kb on + strand at 59.088 kb on + strand at 59.088 kb on + strand at 59.088 kb on + strand at 59.089 kb on - strand at 59.089 kb on - strand at 59.089 kb on - strand at 59.089 kb on - strand at 59.098 kb on + strand at 59.098 kb on + strand at 59.098 kb on + strand at 59.099 kb on - strand at 59.099 kb on - strand at 59.202 kb on + strand, within EX28DRAFT_4396 at 59.202 kb on + strand, within EX28DRAFT_4396 at 59.203 kb on - strand, within EX28DRAFT_4396 at 59.203 kb on - strand, within EX28DRAFT_4396
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days remove 56,684 + EX28DRAFT_4393 0.41 -0.4 56,702 + EX28DRAFT_4393 0.42 +0.6 56,703 - EX28DRAFT_4393 0.42 +0.1 57,016 + EX28DRAFT_4393 0.66 -0.4 57,017 - EX28DRAFT_4393 0.66 +0.4 57,081 + EX28DRAFT_4393 0.71 +2.6 57,082 - EX28DRAFT_4393 0.71 +0.4 57,103 + EX28DRAFT_4393 0.73 +2.1 57,103 + EX28DRAFT_4393 0.73 +0.4 57,155 - EX28DRAFT_4393 0.77 -0.3 57,178 + EX28DRAFT_4393 0.79 -1.8 57,178 + EX28DRAFT_4393 0.79 +0.7 57,179 - EX28DRAFT_4393 0.79 +0.5 57,206 + EX28DRAFT_4393 0.81 +0.2 57,398 + -1.8 57,398 + -0.2 57,398 + -0.2 57,398 + -0.1 57,399 - +0.3 57,399 - +0.2 57,423 - -0.0 57,441 + +0.2 57,441 + +0.1 57,453 - +0.3 57,464 - +0.5 57,505 - -0.8 58,409 + +0.6 58,501 - EX28DRAFT_4395 0.20 -0.0 58,501 - EX28DRAFT_4395 0.20 +0.1 58,576 + EX28DRAFT_4395 0.32 -0.8 58,602 + EX28DRAFT_4395 0.37 -0.8 58,603 - EX28DRAFT_4395 0.37 -0.6 58,603 - EX28DRAFT_4395 0.37 -0.3 58,706 - EX28DRAFT_4395 0.54 -0.3 59,012 - -0.1 59,070 + -0.4 59,070 + +0.4 59,071 - +0.5 59,078 + +0.2 59,078 + -0.0 59,078 + +0.0 59,088 + -2.6 59,088 + +0.1 59,088 + +0.6 59,088 + -0.2 59,088 + +0.8 59,088 + -0.9 59,088 + -1.7 59,089 - -0.6 59,089 - -0.1 59,089 - -2.8 59,089 - -0.9 59,098 + -0.7 59,098 + +0.4 59,098 + -0.1 59,099 - +0.1 59,099 - +0.1 59,202 + EX28DRAFT_4396 0.26 -1.1 59,202 + EX28DRAFT_4396 0.26 +0.2 59,203 - EX28DRAFT_4396 0.27 +1.8 59,203 - EX28DRAFT_4396 0.27 +0.2
Or see this region's nucleotide sequence