Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_4369

Experiment: Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_4367 and EX28DRAFT_4368 overlap by 7 nucleotidesEX28DRAFT_4368 and EX28DRAFT_4369 overlap by 4 nucleotidesEX28DRAFT_4369 and EX28DRAFT_4370 are separated by 44 nucleotidesEX28DRAFT_4370 and EX28DRAFT_4371 are separated by 8 nucleotides EX28DRAFT_4367: EX28DRAFT_4367 - haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED, at 34,009 to 34,608 _4367 EX28DRAFT_4368: EX28DRAFT_4368 - Predicted membrane protein, at 34,602 to 35,483 _4368 EX28DRAFT_4369: EX28DRAFT_4369 - D-tyrosyl-tRNA(Tyr) deacylase, at 35,480 to 35,917 _4369 EX28DRAFT_4370: EX28DRAFT_4370 - thioesterase domain, putative, at 35,962 to 36,903 _4370 EX28DRAFT_4371: EX28DRAFT_4371 - Esterase/lipase, at 36,912 to 37,832 _4371 Position (kb) 35 36Strain fitness (log2 ratio) -3 -2 -1 0 1at 34.518 kb on + strand, within EX28DRAFT_4367at 34.518 kb on + strand, within EX28DRAFT_4367at 34.520 kb on + strand, within EX28DRAFT_4367at 34.520 kb on + strand, within EX28DRAFT_4367at 34.520 kb on + strand, within EX28DRAFT_4367at 34.520 kb on + strand, within EX28DRAFT_4367at 34.521 kb on - strand, within EX28DRAFT_4367at 34.521 kb on - strand, within EX28DRAFT_4367at 34.521 kb on - strand, within EX28DRAFT_4367at 34.521 kb on - strand, within EX28DRAFT_4367at 34.521 kb on - strand, within EX28DRAFT_4367at 34.543 kb on - strand, within EX28DRAFT_4367at 34.585 kb on + strandat 34.586 kb on - strandat 34.601 kb on + strandat 34.601 kb on + strandat 34.601 kb on + strandat 34.606 kb on + strandat 34.680 kb on - strandat 34.869 kb on + strand, within EX28DRAFT_4368at 34.869 kb on + strand, within EX28DRAFT_4368at 34.870 kb on - strand, within EX28DRAFT_4368at 34.870 kb on - strand, within EX28DRAFT_4368at 34.928 kb on + strand, within EX28DRAFT_4368at 34.954 kb on - strand, within EX28DRAFT_4368at 34.954 kb on - strand, within EX28DRAFT_4368at 34.954 kb on - strand, within EX28DRAFT_4368at 34.954 kb on - strand, within EX28DRAFT_4368at 34.991 kb on + strand, within EX28DRAFT_4368at 35.013 kb on + strand, within EX28DRAFT_4368at 35.088 kb on + strand, within EX28DRAFT_4368at 35.089 kb on - strand, within EX28DRAFT_4368at 35.089 kb on - strand, within EX28DRAFT_4368at 35.190 kb on + strand, within EX28DRAFT_4368at 35.292 kb on + strand, within EX28DRAFT_4368at 35.292 kb on + strand, within EX28DRAFT_4368at 35.293 kb on - strand, within EX28DRAFT_4368at 35.368 kb on - strand, within EX28DRAFT_4368at 35.404 kb on + strandat 35.405 kb on - strandat 35.435 kb on + strandat 35.493 kb on + strandat 35.571 kb on + strand, within EX28DRAFT_4369at 35.571 kb on + strand, within EX28DRAFT_4369at 35.571 kb on + strand, within EX28DRAFT_4369at 35.572 kb on - strand, within EX28DRAFT_4369at 35.638 kb on + strand, within EX28DRAFT_4369at 35.717 kb on - strand, within EX28DRAFT_4369at 35.802 kb on - strand, within EX28DRAFT_4369at 35.863 kb on + strand, within EX28DRAFT_4369at 35.863 kb on + strand, within EX28DRAFT_4369at 35.863 kb on + strand, within EX28DRAFT_4369at 35.956 kb on - strandat 35.956 kb on - strandat 35.956 kb on - strandat 35.961 kb on + strandat 35.961 kb on + strandat 35.962 kb on - strandat 35.962 kb on - strandat 35.962 kb on - strandat 35.965 kb on + strandat 35.965 kb on + strandat 35.965 kb on + strandat 35.966 kb on - strandat 35.966 kb on - strandat 36.010 kb on + strandat 36.010 kb on + strandat 36.011 kb on - strandat 36.145 kb on + strand, within EX28DRAFT_4370at 36.145 kb on + strand, within EX28DRAFT_4370at 36.146 kb on - strand, within EX28DRAFT_4370at 36.146 kb on - strand, within EX28DRAFT_4370at 36.146 kb on - strand, within EX28DRAFT_4370at 36.225 kb on - strand, within EX28DRAFT_4370at 36.411 kb on + strand, within EX28DRAFT_4370at 36.411 kb on + strand, within EX28DRAFT_4370at 36.412 kb on - strand, within EX28DRAFT_4370at 36.505 kb on + strand, within EX28DRAFT_4370at 36.506 kb on - strand, within EX28DRAFT_4370at 36.506 kb on - strand, within EX28DRAFT_4370at 36.522 kb on + strand, within EX28DRAFT_4370at 36.687 kb on + strand, within EX28DRAFT_4370at 36.783 kb on - strand, within EX28DRAFT_4370at 36.842 kb on - strandat 36.842 kb on - strandat 36.842 kb on - strandat 36.842 kb on - strandat 36.842 kb on - strandat 36.842 kb on - strandat 36.842 kb on - strandat 36.901 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
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34,518 + EX28DRAFT_4367 0.85 +0.1
34,518 + EX28DRAFT_4367 0.85 +0.8
34,520 + EX28DRAFT_4367 0.85 -1.7
34,520 + EX28DRAFT_4367 0.85 -0.6
34,520 + EX28DRAFT_4367 0.85 +0.7
34,520 + EX28DRAFT_4367 0.85 -0.3
34,521 - EX28DRAFT_4367 0.85 +0.1
34,521 - EX28DRAFT_4367 0.85 +0.3
34,521 - EX28DRAFT_4367 0.85 +0.1
34,521 - EX28DRAFT_4367 0.85 +1.6
34,521 - EX28DRAFT_4367 0.85 +0.4
34,543 - EX28DRAFT_4367 0.89 +0.7
34,585 + -0.1
34,586 - -0.2
34,601 + -0.1
34,601 + -0.8
34,601 + +0.3
34,606 + -0.3
34,680 - -0.8
34,869 + EX28DRAFT_4368 0.30 -0.0
34,869 + EX28DRAFT_4368 0.30 +0.1
34,870 - EX28DRAFT_4368 0.30 -0.4
34,870 - EX28DRAFT_4368 0.30 +0.2
34,928 + EX28DRAFT_4368 0.37 +1.1
34,954 - EX28DRAFT_4368 0.40 -0.3
34,954 - EX28DRAFT_4368 0.40 +0.4
34,954 - EX28DRAFT_4368 0.40 +0.2
34,954 - EX28DRAFT_4368 0.40 +0.5
34,991 + EX28DRAFT_4368 0.44 +1.5
35,013 + EX28DRAFT_4368 0.47 -1.1
35,088 + EX28DRAFT_4368 0.55 -3.7
35,089 - EX28DRAFT_4368 0.55 -0.1
35,089 - EX28DRAFT_4368 0.55 +0.4
35,190 + EX28DRAFT_4368 0.67 -0.1
35,292 + EX28DRAFT_4368 0.78 +0.3
35,292 + EX28DRAFT_4368 0.78 -1.3
35,293 - EX28DRAFT_4368 0.78 +0.2
35,368 - EX28DRAFT_4368 0.87 +1.2
35,404 + +1.0
35,405 - +0.3
35,435 + +1.1
35,493 + -0.4
35,571 + EX28DRAFT_4369 0.21 +0.6
35,571 + EX28DRAFT_4369 0.21 +0.3
35,571 + EX28DRAFT_4369 0.21 +0.3
35,572 - EX28DRAFT_4369 0.21 +0.7
35,638 + EX28DRAFT_4369 0.36 -1.5
35,717 - EX28DRAFT_4369 0.54 +1.1
35,802 - EX28DRAFT_4369 0.74 +1.7
35,863 + EX28DRAFT_4369 0.87 +0.5
35,863 + EX28DRAFT_4369 0.87 +0.3
35,863 + EX28DRAFT_4369 0.87 -0.3
35,956 - -1.1
35,956 - -1.0
35,956 - -0.3
35,961 + +0.6
35,961 + +0.9
35,962 - -0.0
35,962 - -0.7
35,962 - +0.9
35,965 + -0.4
35,965 + -0.3
35,965 + -0.5
35,966 - -0.8
35,966 - -0.2
36,010 + -0.1
36,010 + +0.7
36,011 - -0.7
36,145 + EX28DRAFT_4370 0.19 +0.3
36,145 + EX28DRAFT_4370 0.19 -0.0
36,146 - EX28DRAFT_4370 0.20 +1.5
36,146 - EX28DRAFT_4370 0.20 +0.0
36,146 - EX28DRAFT_4370 0.20 +0.2
36,225 - EX28DRAFT_4370 0.28 +0.1
36,411 + EX28DRAFT_4370 0.48 +0.1
36,411 + EX28DRAFT_4370 0.48 -0.2
36,412 - EX28DRAFT_4370 0.48 -0.2
36,505 + EX28DRAFT_4370 0.58 +0.6
36,506 - EX28DRAFT_4370 0.58 -0.2
36,506 - EX28DRAFT_4370 0.58 +0.2
36,522 + EX28DRAFT_4370 0.59 -0.0
36,687 + EX28DRAFT_4370 0.77 -0.8
36,783 - EX28DRAFT_4370 0.87 +0.9
36,842 - +0.3
36,842 - +0.7
36,842 - +0.6
36,842 - -0.5
36,842 - -0.1
36,842 - -0.7
36,842 - +0.1
36,901 + -0.2

Or see this region's nucleotide sequence