Experiment: Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_4261 and EX28DRAFT_4262 are separated by 184 nucleotides EX28DRAFT_4262 and EX28DRAFT_4263 are separated by 136 nucleotides
EX28DRAFT_4261: EX28DRAFT_4261 - NADPH:quinone reductase and related Zn-dependent oxidoreductases, at 66,324 to 67,307
_4261
EX28DRAFT_4262: EX28DRAFT_4262 - phage shock protein G, at 67,492 to 67,734
_4262
EX28DRAFT_4263: EX28DRAFT_4263 - tRNA dihydrouridine synthase A, at 67,871 to 68,865
_4263
Position (kb) 67
68 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 66.557 kb on + strand, within EX28DRAFT_4261 at 66.557 kb on + strand, within EX28DRAFT_4261 at 66.558 kb on - strand, within EX28DRAFT_4261 at 66.560 kb on + strand, within EX28DRAFT_4261 at 66.583 kb on - strand, within EX28DRAFT_4261 at 66.607 kb on - strand, within EX28DRAFT_4261 at 66.711 kb on + strand, within EX28DRAFT_4261 at 66.711 kb on + strand, within EX28DRAFT_4261 at 66.711 kb on + strand, within EX28DRAFT_4261 at 66.712 kb on - strand, within EX28DRAFT_4261 at 66.893 kb on + strand, within EX28DRAFT_4261 at 66.893 kb on + strand, within EX28DRAFT_4261 at 66.894 kb on - strand, within EX28DRAFT_4261 at 66.894 kb on - strand, within EX28DRAFT_4261 at 66.897 kb on + strand, within EX28DRAFT_4261 at 66.963 kb on + strand, within EX28DRAFT_4261 at 66.963 kb on + strand, within EX28DRAFT_4261 at 67.077 kb on - strand, within EX28DRAFT_4261 at 67.101 kb on + strand, within EX28DRAFT_4261 at 67.101 kb on + strand, within EX28DRAFT_4261 at 67.102 kb on - strand, within EX28DRAFT_4261 at 67.102 kb on - strand, within EX28DRAFT_4261 at 67.128 kb on + strand, within EX28DRAFT_4261 at 67.210 kb on + strand at 67.211 kb on - strand at 67.211 kb on - strand at 67.365 kb on + strand at 67.365 kb on + strand at 67.366 kb on - strand at 67.369 kb on + strand at 67.369 kb on + strand at 67.374 kb on + strand at 67.406 kb on - strand at 67.420 kb on + strand at 67.424 kb on + strand at 67.425 kb on - strand at 67.464 kb on - strand at 67.470 kb on - strand at 67.489 kb on - strand at 67.489 kb on - strand at 67.583 kb on - strand, within EX28DRAFT_4262 at 67.768 kb on - strand at 68.002 kb on + strand, within EX28DRAFT_4263 at 68.025 kb on + strand, within EX28DRAFT_4263 at 68.025 kb on + strand, within EX28DRAFT_4263 at 68.025 kb on + strand, within EX28DRAFT_4263 at 68.055 kb on + strand, within EX28DRAFT_4263 at 68.055 kb on + strand, within EX28DRAFT_4263 at 68.061 kb on + strand, within EX28DRAFT_4263 at 68.062 kb on - strand, within EX28DRAFT_4263 at 68.155 kb on - strand, within EX28DRAFT_4263 at 68.185 kb on + strand, within EX28DRAFT_4263 at 68.186 kb on - strand, within EX28DRAFT_4263 at 68.689 kb on - strand, within EX28DRAFT_4263 at 68.689 kb on - strand, within EX28DRAFT_4263 at 68.698 kb on - strand, within EX28DRAFT_4263
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days remove 66,557 + EX28DRAFT_4261 0.24 -0.8 66,557 + EX28DRAFT_4261 0.24 -1.1 66,558 - EX28DRAFT_4261 0.24 -0.0 66,560 + EX28DRAFT_4261 0.24 +0.5 66,583 - EX28DRAFT_4261 0.26 +1.6 66,607 - EX28DRAFT_4261 0.29 -0.5 66,711 + EX28DRAFT_4261 0.39 -0.1 66,711 + EX28DRAFT_4261 0.39 +0.6 66,711 + EX28DRAFT_4261 0.39 +0.5 66,712 - EX28DRAFT_4261 0.39 -0.7 66,893 + EX28DRAFT_4261 0.58 +0.6 66,893 + EX28DRAFT_4261 0.58 +0.1 66,894 - EX28DRAFT_4261 0.58 +0.2 66,894 - EX28DRAFT_4261 0.58 +0.0 66,897 + EX28DRAFT_4261 0.58 -0.1 66,963 + EX28DRAFT_4261 0.65 -0.8 66,963 + EX28DRAFT_4261 0.65 -2.3 67,077 - EX28DRAFT_4261 0.77 -0.0 67,101 + EX28DRAFT_4261 0.79 -0.1 67,101 + EX28DRAFT_4261 0.79 +0.1 67,102 - EX28DRAFT_4261 0.79 -0.4 67,102 - EX28DRAFT_4261 0.79 +1.0 67,128 + EX28DRAFT_4261 0.82 -0.2 67,210 + -1.5 67,211 - -0.5 67,211 - +0.2 67,365 + +1.0 67,365 + +0.0 67,366 - -0.2 67,369 + +0.3 67,369 + +0.1 67,374 + -0.2 67,406 - +0.5 67,420 + +0.0 67,424 + +0.1 67,425 - -0.4 67,464 - +0.0 67,470 - -3.1 67,489 - +0.3 67,489 - -0.3 67,583 - EX28DRAFT_4262 0.37 +0.4 67,768 - -0.4 68,002 + EX28DRAFT_4263 0.13 +2.8 68,025 + EX28DRAFT_4263 0.15 -0.6 68,025 + EX28DRAFT_4263 0.15 +0.6 68,025 + EX28DRAFT_4263 0.15 +0.7 68,055 + EX28DRAFT_4263 0.18 -0.5 68,055 + EX28DRAFT_4263 0.18 +0.8 68,061 + EX28DRAFT_4263 0.19 -0.3 68,062 - EX28DRAFT_4263 0.19 -0.5 68,155 - EX28DRAFT_4263 0.29 +0.5 68,185 + EX28DRAFT_4263 0.32 -0.5 68,186 - EX28DRAFT_4263 0.32 -0.4 68,689 - EX28DRAFT_4263 0.82 +0.2 68,689 - EX28DRAFT_4263 0.82 -0.7 68,698 - EX28DRAFT_4263 0.83 -0.1
Or see this region's nucleotide sequence