Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_4223

Experiment: Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_4221 and EX28DRAFT_4222 are separated by 240 nucleotidesEX28DRAFT_4222 and EX28DRAFT_4223 are separated by 5 nucleotidesEX28DRAFT_4223 and EX28DRAFT_4224 overlap by 1 nucleotidesEX28DRAFT_4224 and EX28DRAFT_4225 are separated by 2 nucleotides EX28DRAFT_4221: EX28DRAFT_4221 - Sugar kinases, ribokinase family, at 27,897 to 28,910 _4221 EX28DRAFT_4222: EX28DRAFT_4222 - hypothetical protein, at 29,151 to 29,729 _4222 EX28DRAFT_4223: EX28DRAFT_4223 - hypothetical protein, at 29,735 to 30,949 _4223 EX28DRAFT_4224: EX28DRAFT_4224 - Predicted double-glycine peptidase, at 30,949 to 31,476 _4224 EX28DRAFT_4225: EX28DRAFT_4225 - Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain, at 31,479 to 32,210 _4225 Position (kb) 29 30 31Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 28.797 kb on + strand, within EX28DRAFT_4221at 28.798 kb on - strand, within EX28DRAFT_4221at 28.892 kb on + strandat 28.913 kb on + strandat 28.931 kb on + strandat 28.942 kb on + strandat 28.964 kb on + strandat 28.985 kb on - strandat 29.108 kb on + strandat 29.108 kb on + strandat 29.109 kb on - strandat 29.294 kb on + strand, within EX28DRAFT_4222at 29.343 kb on + strand, within EX28DRAFT_4222at 29.437 kb on - strand, within EX28DRAFT_4222at 29.439 kb on - strand, within EX28DRAFT_4222at 29.441 kb on - strand, within EX28DRAFT_4222at 29.444 kb on + strand, within EX28DRAFT_4222at 29.445 kb on - strand, within EX28DRAFT_4222at 29.484 kb on + strand, within EX28DRAFT_4222at 29.489 kb on - strand, within EX28DRAFT_4222at 29.637 kb on + strand, within EX28DRAFT_4222at 29.638 kb on - strand, within EX28DRAFT_4222at 29.770 kb on + strandat 29.849 kb on - strandat 29.933 kb on - strand, within EX28DRAFT_4223at 29.939 kb on + strand, within EX28DRAFT_4223at 29.984 kb on - strand, within EX28DRAFT_4223at 30.097 kb on + strand, within EX28DRAFT_4223at 30.102 kb on + strand, within EX28DRAFT_4223at 30.103 kb on - strand, within EX28DRAFT_4223at 30.340 kb on - strand, within EX28DRAFT_4223at 30.421 kb on - strand, within EX28DRAFT_4223at 30.496 kb on + strand, within EX28DRAFT_4223at 30.519 kb on - strand, within EX28DRAFT_4223at 30.519 kb on - strand, within EX28DRAFT_4223at 30.557 kb on - strand, within EX28DRAFT_4223at 30.734 kb on - strand, within EX28DRAFT_4223at 30.764 kb on + strand, within EX28DRAFT_4223at 30.764 kb on + strand, within EX28DRAFT_4223at 30.765 kb on - strand, within EX28DRAFT_4223at 30.765 kb on - strand, within EX28DRAFT_4223at 30.765 kb on - strand, within EX28DRAFT_4223at 30.765 kb on - strand, within EX28DRAFT_4223at 30.765 kb on - strand, within EX28DRAFT_4223at 30.766 kb on + strand, within EX28DRAFT_4223at 30.767 kb on - strand, within EX28DRAFT_4223at 30.779 kb on - strand, within EX28DRAFT_4223at 30.782 kb on - strand, within EX28DRAFT_4223at 30.788 kb on + strand, within EX28DRAFT_4223at 30.878 kb on - strandat 30.971 kb on + strandat 30.971 kb on + strandat 30.977 kb on + strandat 31.001 kb on - strandat 31.100 kb on + strand, within EX28DRAFT_4224at 31.100 kb on + strand, within EX28DRAFT_4224at 31.152 kb on + strand, within EX28DRAFT_4224at 31.327 kb on + strand, within EX28DRAFT_4224at 31.359 kb on + strand, within EX28DRAFT_4224at 31.475 kb on + strandat 31.477 kb on + strandat 31.478 kb on - strandat 31.478 kb on - strandat 31.478 kb on - strandat 31.480 kb on + strandat 31.481 kb on - strandat 31.481 kb on - strandat 31.523 kb on - strandat 31.715 kb on - strand, within EX28DRAFT_4225at 31.910 kb on - strand, within EX28DRAFT_4225at 31.910 kb on - strand, within EX28DRAFT_4225

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
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28,797 + EX28DRAFT_4221 0.89 +1.0
28,798 - EX28DRAFT_4221 0.89 -1.0
28,892 + +0.1
28,913 + +0.1
28,931 + -0.4
28,942 + -0.4
28,964 + -0.5
28,985 - -0.1
29,108 + +0.0
29,108 + +0.7
29,109 - +0.4
29,294 + EX28DRAFT_4222 0.25 -0.0
29,343 + EX28DRAFT_4222 0.33 +2.1
29,437 - EX28DRAFT_4222 0.49 +1.0
29,439 - EX28DRAFT_4222 0.50 -0.4
29,441 - EX28DRAFT_4222 0.50 +0.1
29,444 + EX28DRAFT_4222 0.51 +0.7
29,445 - EX28DRAFT_4222 0.51 +0.2
29,484 + EX28DRAFT_4222 0.58 +0.2
29,489 - EX28DRAFT_4222 0.58 +0.3
29,637 + EX28DRAFT_4222 0.84 +0.1
29,638 - EX28DRAFT_4222 0.84 -0.3
29,770 + -0.3
29,849 - -0.8
29,933 - EX28DRAFT_4223 0.16 +0.8
29,939 + EX28DRAFT_4223 0.17 +0.5
29,984 - EX28DRAFT_4223 0.20 -0.5
30,097 + EX28DRAFT_4223 0.30 -0.2
30,102 + EX28DRAFT_4223 0.30 -0.0
30,103 - EX28DRAFT_4223 0.30 +0.1
30,340 - EX28DRAFT_4223 0.50 -0.1
30,421 - EX28DRAFT_4223 0.56 -0.2
30,496 + EX28DRAFT_4223 0.63 +0.5
30,519 - EX28DRAFT_4223 0.65 +0.2
30,519 - EX28DRAFT_4223 0.65 -0.4
30,557 - EX28DRAFT_4223 0.68 -0.0
30,734 - EX28DRAFT_4223 0.82 +0.5
30,764 + EX28DRAFT_4223 0.85 -0.8
30,764 + EX28DRAFT_4223 0.85 -0.3
30,765 - EX28DRAFT_4223 0.85 +0.8
30,765 - EX28DRAFT_4223 0.85 +0.3
30,765 - EX28DRAFT_4223 0.85 -0.1
30,765 - EX28DRAFT_4223 0.85 -4.0
30,765 - EX28DRAFT_4223 0.85 +0.3
30,766 + EX28DRAFT_4223 0.85 +0.5
30,767 - EX28DRAFT_4223 0.85 -0.7
30,779 - EX28DRAFT_4223 0.86 -1.4
30,782 - EX28DRAFT_4223 0.86 -0.3
30,788 + EX28DRAFT_4223 0.87 -0.8
30,878 - -0.7
30,971 + -0.5
30,971 + -0.5
30,977 + +4.0
31,001 - +0.2
31,100 + EX28DRAFT_4224 0.29 -2.3
31,100 + EX28DRAFT_4224 0.29 -0.3
31,152 + EX28DRAFT_4224 0.38 +0.5
31,327 + EX28DRAFT_4224 0.72 -1.3
31,359 + EX28DRAFT_4224 0.78 -1.6
31,475 + +0.3
31,477 + +0.2
31,478 - +0.2
31,478 - -1.0
31,478 - +1.0
31,480 + -0.0
31,481 - -1.2
31,481 - +2.0
31,523 - +0.1
31,715 - EX28DRAFT_4225 0.32 -0.1
31,910 - EX28DRAFT_4225 0.59 +0.5
31,910 - EX28DRAFT_4225 0.59 +0.7

Or see this region's nucleotide sequence