Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_4200

Experiment: Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_4198 and EX28DRAFT_4199 are separated by 80 nucleotidesEX28DRAFT_4199 and EX28DRAFT_4200 are separated by 136 nucleotidesEX28DRAFT_4200 and EX28DRAFT_4201 are separated by 24 nucleotides EX28DRAFT_4198: EX28DRAFT_4198 - alkylphosphonate utilization operon protein PhnA, at 8,227 to 8,562 _4198 EX28DRAFT_4199: EX28DRAFT_4199 - Uncharacterized protein conserved in bacteria, at 8,643 to 9,080 _4199 EX28DRAFT_4200: EX28DRAFT_4200 - phosphonate ABC transporter, ATP-binding protein, at 9,217 to 10,005 _4200 EX28DRAFT_4201: EX28DRAFT_4201 - phosphonate ABC transporter, periplasmic phosphonate binding protein, at 10,030 to 11,046 _4201 Position (kb) 9 10 11Strain fitness (log2 ratio) -2 -1 0 1 2at 8.226 kb on + strandat 8.269 kb on + strand, within EX28DRAFT_4198at 8.269 kb on + strand, within EX28DRAFT_4198at 8.270 kb on - strand, within EX28DRAFT_4198at 8.270 kb on - strand, within EX28DRAFT_4198at 8.270 kb on - strand, within EX28DRAFT_4198at 8.270 kb on - strand, within EX28DRAFT_4198at 8.270 kb on - strand, within EX28DRAFT_4198at 8.277 kb on + strand, within EX28DRAFT_4198at 8.405 kb on + strand, within EX28DRAFT_4198at 8.405 kb on + strand, within EX28DRAFT_4198at 8.406 kb on - strand, within EX28DRAFT_4198at 8.494 kb on - strand, within EX28DRAFT_4198at 8.565 kb on + strandat 8.607 kb on - strandat 8.607 kb on - strandat 8.612 kb on + strandat 8.642 kb on + strandat 8.650 kb on + strandat 8.659 kb on - strandat 8.730 kb on + strand, within EX28DRAFT_4199at 8.730 kb on + strand, within EX28DRAFT_4199at 8.731 kb on - strand, within EX28DRAFT_4199at 8.732 kb on + strand, within EX28DRAFT_4199at 8.732 kb on + strand, within EX28DRAFT_4199at 9.032 kb on + strand, within EX28DRAFT_4199at 9.036 kb on + strand, within EX28DRAFT_4199at 9.036 kb on + strand, within EX28DRAFT_4199at 9.037 kb on - strandat 9.057 kb on - strandat 9.199 kb on + strandat 9.200 kb on - strandat 9.268 kb on - strandat 9.365 kb on + strand, within EX28DRAFT_4200at 9.365 kb on + strand, within EX28DRAFT_4200at 9.365 kb on + strand, within EX28DRAFT_4200at 9.376 kb on - strand, within EX28DRAFT_4200at 9.484 kb on + strand, within EX28DRAFT_4200at 9.618 kb on - strand, within EX28DRAFT_4200at 9.860 kb on - strand, within EX28DRAFT_4200at 9.962 kb on - strandat 10.003 kb on + strandat 10.003 kb on + strandat 10.004 kb on - strandat 10.004 kb on - strandat 10.027 kb on + strandat 10.027 kb on + strandat 10.028 kb on - strandat 10.036 kb on + strandat 10.036 kb on + strandat 10.063 kb on - strandat 10.102 kb on + strandat 10.275 kb on + strand, within EX28DRAFT_4201at 10.278 kb on + strand, within EX28DRAFT_4201at 10.278 kb on + strand, within EX28DRAFT_4201at 10.498 kb on + strand, within EX28DRAFT_4201at 10.516 kb on + strand, within EX28DRAFT_4201at 10.516 kb on + strand, within EX28DRAFT_4201at 10.516 kb on + strand, within EX28DRAFT_4201at 10.516 kb on + strand, within EX28DRAFT_4201at 10.782 kb on + strand, within EX28DRAFT_4201at 10.790 kb on - strand, within EX28DRAFT_4201

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
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8,226 + -1.8
8,269 + EX28DRAFT_4198 0.12 -0.6
8,269 + EX28DRAFT_4198 0.12 -0.4
8,270 - EX28DRAFT_4198 0.13 +0.3
8,270 - EX28DRAFT_4198 0.13 +0.4
8,270 - EX28DRAFT_4198 0.13 +1.4
8,270 - EX28DRAFT_4198 0.13 +0.2
8,270 - EX28DRAFT_4198 0.13 +0.2
8,277 + EX28DRAFT_4198 0.15 -0.4
8,405 + EX28DRAFT_4198 0.53 +0.1
8,405 + EX28DRAFT_4198 0.53 +0.2
8,406 - EX28DRAFT_4198 0.53 +1.0
8,494 - EX28DRAFT_4198 0.79 -1.2
8,565 + -0.8
8,607 - +0.1
8,607 - -0.6
8,612 + -1.2
8,642 + +1.3
8,650 + +0.1
8,659 - -1.9
8,730 + EX28DRAFT_4199 0.20 -0.9
8,730 + EX28DRAFT_4199 0.20 +0.2
8,731 - EX28DRAFT_4199 0.20 +0.1
8,732 + EX28DRAFT_4199 0.20 -0.7
8,732 + EX28DRAFT_4199 0.20 -1.2
9,032 + EX28DRAFT_4199 0.89 +0.8
9,036 + EX28DRAFT_4199 0.90 +1.0
9,036 + EX28DRAFT_4199 0.90 -0.9
9,037 - +0.4
9,057 - -0.4
9,199 + -0.1
9,200 - -0.0
9,268 - -0.2
9,365 + EX28DRAFT_4200 0.19 +0.2
9,365 + EX28DRAFT_4200 0.19 +0.9
9,365 + EX28DRAFT_4200 0.19 -0.2
9,376 - EX28DRAFT_4200 0.20 -1.8
9,484 + EX28DRAFT_4200 0.34 -0.1
9,618 - EX28DRAFT_4200 0.51 +0.2
9,860 - EX28DRAFT_4200 0.81 +2.4
9,962 - +0.8
10,003 + +0.9
10,003 + +0.3
10,004 - +0.6
10,004 - +0.1
10,027 + +0.5
10,027 + -0.0
10,028 - -0.1
10,036 + +0.1
10,036 + -0.3
10,063 - -1.0
10,102 + +0.3
10,275 + EX28DRAFT_4201 0.24 -0.9
10,278 + EX28DRAFT_4201 0.24 -1.8
10,278 + EX28DRAFT_4201 0.24 +0.1
10,498 + EX28DRAFT_4201 0.46 -0.4
10,516 + EX28DRAFT_4201 0.48 +2.0
10,516 + EX28DRAFT_4201 0.48 -0.5
10,516 + EX28DRAFT_4201 0.48 -0.6
10,516 + EX28DRAFT_4201 0.48 -0.6
10,782 + EX28DRAFT_4201 0.74 +0.1
10,790 - EX28DRAFT_4201 0.75 +0.3

Or see this region's nucleotide sequence