Experiment: Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_4160 and EX28DRAFT_4161 are separated by 135 nucleotides EX28DRAFT_4161 and EX28DRAFT_4162 overlap by 4 nucleotides EX28DRAFT_4162 and EX28DRAFT_4163 are separated by 239 nucleotides
EX28DRAFT_4160: EX28DRAFT_4160 - uroporphyrin-III C-methyltransferase, at 140,215 to 141,588
_4160
EX28DRAFT_4161: EX28DRAFT_4161 - nitrite reductase [NAD(P)H], small subunit, at 141,724 to 142,050
_4161
EX28DRAFT_4162: EX28DRAFT_4162 - nitrite reductase [NAD(P)H], large subunit, at 142,047 to 144,590
_4162
EX28DRAFT_4163: EX28DRAFT_4163 - Cytosine deaminase and related metal-dependent hydrolases, at 144,830 to 146,146
_4163
Position (kb) 142
143
144
145 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3
4 at 141.414 kb on + strand, within EX28DRAFT_4160 at 141.595 kb on - strand at 141.695 kb on + strand at 141.696 kb on - strand at 141.696 kb on - strand at 141.725 kb on + strand at 141.767 kb on + strand, within EX28DRAFT_4161 at 141.767 kb on + strand, within EX28DRAFT_4161 at 141.768 kb on - strand, within EX28DRAFT_4161 at 141.919 kb on - strand, within EX28DRAFT_4161 at 142.033 kb on - strand at 142.079 kb on + strand at 142.079 kb on + strand at 142.079 kb on + strand at 142.088 kb on - strand at 142.131 kb on + strand at 142.131 kb on + strand at 142.132 kb on - strand at 142.132 kb on - strand at 142.304 kb on - strand, within EX28DRAFT_4162 at 142.372 kb on + strand, within EX28DRAFT_4162 at 142.372 kb on + strand, within EX28DRAFT_4162 at 142.478 kb on - strand, within EX28DRAFT_4162 at 142.810 kb on + strand, within EX28DRAFT_4162 at 142.811 kb on - strand, within EX28DRAFT_4162 at 142.833 kb on - strand, within EX28DRAFT_4162 at 142.898 kb on - strand, within EX28DRAFT_4162 at 142.955 kb on + strand, within EX28DRAFT_4162 at 142.975 kb on + strand, within EX28DRAFT_4162 at 142.975 kb on + strand, within EX28DRAFT_4162 at 143.075 kb on + strand, within EX28DRAFT_4162 at 143.075 kb on + strand, within EX28DRAFT_4162 at 143.076 kb on - strand, within EX28DRAFT_4162 at 143.119 kb on + strand, within EX28DRAFT_4162 at 143.119 kb on + strand, within EX28DRAFT_4162 at 143.119 kb on + strand, within EX28DRAFT_4162 at 143.496 kb on - strand, within EX28DRAFT_4162 at 143.524 kb on + strand, within EX28DRAFT_4162 at 143.524 kb on + strand, within EX28DRAFT_4162 at 143.525 kb on - strand, within EX28DRAFT_4162 at 143.525 kb on - strand, within EX28DRAFT_4162 at 143.548 kb on + strand, within EX28DRAFT_4162 at 143.548 kb on + strand, within EX28DRAFT_4162 at 143.549 kb on - strand, within EX28DRAFT_4162 at 143.554 kb on + strand, within EX28DRAFT_4162 at 143.554 kb on + strand, within EX28DRAFT_4162 at 143.554 kb on + strand, within EX28DRAFT_4162 at 143.554 kb on + strand, within EX28DRAFT_4162 at 143.555 kb on - strand, within EX28DRAFT_4162 at 143.555 kb on - strand, within EX28DRAFT_4162 at 143.555 kb on - strand, within EX28DRAFT_4162 at 143.601 kb on + strand, within EX28DRAFT_4162 at 143.672 kb on + strand, within EX28DRAFT_4162 at 143.724 kb on + strand, within EX28DRAFT_4162 at 143.725 kb on - strand, within EX28DRAFT_4162 at 143.761 kb on + strand, within EX28DRAFT_4162 at 143.761 kb on + strand, within EX28DRAFT_4162 at 143.762 kb on - strand, within EX28DRAFT_4162 at 143.864 kb on + strand, within EX28DRAFT_4162 at 144.436 kb on + strand at 144.436 kb on + strand at 144.436 kb on + strand at 144.437 kb on - strand at 144.536 kb on + strand at 144.647 kb on + strand at 144.829 kb on + strand at 144.835 kb on + strand at 144.835 kb on + strand at 144.835 kb on + strand at 144.835 kb on + strand at 144.836 kb on - strand at 144.966 kb on + strand, within EX28DRAFT_4163 at 144.966 kb on + strand, within EX28DRAFT_4163 at 144.967 kb on - strand, within EX28DRAFT_4163 at 145.451 kb on + strand, within EX28DRAFT_4163 at 145.452 kb on - strand, within EX28DRAFT_4163 at 145.589 kb on + strand, within EX28DRAFT_4163 at 145.590 kb on - strand, within EX28DRAFT_4163
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days remove 141,414 + EX28DRAFT_4160 0.87 +0.4 141,595 - -2.4 141,695 + -0.1 141,696 - +0.3 141,696 - -0.1 141,725 + +0.0 141,767 + EX28DRAFT_4161 0.13 +1.1 141,767 + EX28DRAFT_4161 0.13 +0.3 141,768 - EX28DRAFT_4161 0.13 +0.2 141,919 - EX28DRAFT_4161 0.60 +3.8 142,033 - +0.2 142,079 + -0.9 142,079 + +0.0 142,079 + -0.6 142,088 - +0.1 142,131 + -1.1 142,131 + +0.3 142,132 - -0.4 142,132 - +0.1 142,304 - EX28DRAFT_4162 0.10 -0.1 142,372 + EX28DRAFT_4162 0.13 +0.0 142,372 + EX28DRAFT_4162 0.13 -0.2 142,478 - EX28DRAFT_4162 0.17 +0.0 142,810 + EX28DRAFT_4162 0.30 +0.3 142,811 - EX28DRAFT_4162 0.30 +1.3 142,833 - EX28DRAFT_4162 0.31 -0.1 142,898 - EX28DRAFT_4162 0.33 -0.1 142,955 + EX28DRAFT_4162 0.36 +0.0 142,975 + EX28DRAFT_4162 0.36 +0.5 142,975 + EX28DRAFT_4162 0.36 -0.8 143,075 + EX28DRAFT_4162 0.40 +0.4 143,075 + EX28DRAFT_4162 0.40 +2.8 143,076 - EX28DRAFT_4162 0.40 -1.4 143,119 + EX28DRAFT_4162 0.42 +0.6 143,119 + EX28DRAFT_4162 0.42 -0.1 143,119 + EX28DRAFT_4162 0.42 +0.5 143,496 - EX28DRAFT_4162 0.57 -5.7 143,524 + EX28DRAFT_4162 0.58 -1.4 143,524 + EX28DRAFT_4162 0.58 -1.0 143,525 - EX28DRAFT_4162 0.58 -0.9 143,525 - EX28DRAFT_4162 0.58 +0.2 143,548 + EX28DRAFT_4162 0.59 -0.5 143,548 + EX28DRAFT_4162 0.59 -0.2 143,549 - EX28DRAFT_4162 0.59 +0.8 143,554 + EX28DRAFT_4162 0.59 -0.1 143,554 + EX28DRAFT_4162 0.59 -0.3 143,554 + EX28DRAFT_4162 0.59 +0.2 143,554 + EX28DRAFT_4162 0.59 -0.2 143,555 - EX28DRAFT_4162 0.59 +0.1 143,555 - EX28DRAFT_4162 0.59 -0.7 143,555 - EX28DRAFT_4162 0.59 -0.2 143,601 + EX28DRAFT_4162 0.61 +1.6 143,672 + EX28DRAFT_4162 0.64 +0.5 143,724 + EX28DRAFT_4162 0.66 +0.5 143,725 - EX28DRAFT_4162 0.66 -1.7 143,761 + EX28DRAFT_4162 0.67 +0.4 143,761 + EX28DRAFT_4162 0.67 +0.2 143,762 - EX28DRAFT_4162 0.67 -1.1 143,864 + EX28DRAFT_4162 0.71 +4.0 144,436 + -0.0 144,436 + -1.6 144,436 + +0.1 144,437 - -0.6 144,536 + -0.4 144,647 + +1.0 144,829 + +0.6 144,835 + +0.4 144,835 + -0.7 144,835 + +0.5 144,835 + -0.4 144,836 - -1.2 144,966 + EX28DRAFT_4163 0.10 +0.4 144,966 + EX28DRAFT_4163 0.10 -0.0 144,967 - EX28DRAFT_4163 0.10 +0.7 145,451 + EX28DRAFT_4163 0.47 +0.6 145,452 - EX28DRAFT_4163 0.47 -0.6 145,589 + EX28DRAFT_4163 0.58 -0.0 145,590 - EX28DRAFT_4163 0.58 +3.0
Or see this region's nucleotide sequence