Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_4140

Experiment: Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_4139 and EX28DRAFT_4140 are separated by 125 nucleotidesEX28DRAFT_4140 and EX28DRAFT_4141 are separated by 391 nucleotides EX28DRAFT_4139: EX28DRAFT_4139 - Signal transduction histidine kinase, at 118,458 to 119,804 _4139 EX28DRAFT_4140: EX28DRAFT_4140 - phosphoenolpyruvate carboxykinase (ATP), at 119,930 to 121,549 _4140 EX28DRAFT_4141: EX28DRAFT_4141 - Disulfide bond chaperones of the HSP33 family, at 121,941 to 122,819 _4141 Position (kb) 119 120 121 122Strain fitness (log2 ratio) -1 0 1at 118.987 kb on + strand, within EX28DRAFT_4139at 118.988 kb on - strand, within EX28DRAFT_4139at 118.997 kb on + strand, within EX28DRAFT_4139at 118.999 kb on + strand, within EX28DRAFT_4139at 118.999 kb on + strand, within EX28DRAFT_4139at 118.999 kb on + strand, within EX28DRAFT_4139at 119.000 kb on - strand, within EX28DRAFT_4139at 119.057 kb on + strand, within EX28DRAFT_4139at 119.117 kb on + strand, within EX28DRAFT_4139at 119.123 kb on + strand, within EX28DRAFT_4139at 119.124 kb on - strand, within EX28DRAFT_4139at 119.160 kb on - strand, within EX28DRAFT_4139at 119.211 kb on - strand, within EX28DRAFT_4139at 119.251 kb on - strand, within EX28DRAFT_4139at 119.270 kb on + strand, within EX28DRAFT_4139at 119.289 kb on - strand, within EX28DRAFT_4139at 119.446 kb on + strand, within EX28DRAFT_4139at 119.606 kb on + strand, within EX28DRAFT_4139at 119.668 kb on + strand, within EX28DRAFT_4139at 119.691 kb on - strandat 119.931 kb on + strandat 119.931 kb on + strandat 119.938 kb on + strandat 119.939 kb on - strandat 119.939 kb on - strandat 119.981 kb on - strandat 119.981 kb on - strandat 119.982 kb on + strandat 119.982 kb on + strandat 119.983 kb on - strandat 119.983 kb on - strandat 119.983 kb on - strandat 120.054 kb on + strandat 120.055 kb on - strandat 120.055 kb on - strandat 120.205 kb on + strand, within EX28DRAFT_4140at 120.206 kb on - strand, within EX28DRAFT_4140at 120.206 kb on - strand, within EX28DRAFT_4140at 120.292 kb on - strand, within EX28DRAFT_4140at 120.538 kb on - strand, within EX28DRAFT_4140at 120.538 kb on - strand, within EX28DRAFT_4140at 120.697 kb on - strand, within EX28DRAFT_4140at 120.892 kb on - strand, within EX28DRAFT_4140at 120.892 kb on - strand, within EX28DRAFT_4140at 120.892 kb on - strand, within EX28DRAFT_4140at 120.892 kb on - strand, within EX28DRAFT_4140at 121.097 kb on - strand, within EX28DRAFT_4140at 121.271 kb on - strand, within EX28DRAFT_4140at 121.339 kb on + strand, within EX28DRAFT_4140at 121.341 kb on + strand, within EX28DRAFT_4140at 121.341 kb on + strand, within EX28DRAFT_4140at 121.341 kb on + strand, within EX28DRAFT_4140at 121.342 kb on - strand, within EX28DRAFT_4140at 121.342 kb on - strand, within EX28DRAFT_4140at 121.342 kb on - strand, within EX28DRAFT_4140at 121.342 kb on - strand, within EX28DRAFT_4140at 121.342 kb on - strand, within EX28DRAFT_4140at 121.342 kb on - strand, within EX28DRAFT_4140at 121.345 kb on + strand, within EX28DRAFT_4140at 121.345 kb on + strand, within EX28DRAFT_4140at 121.345 kb on + strand, within EX28DRAFT_4140at 121.345 kb on + strand, within EX28DRAFT_4140at 121.346 kb on - strand, within EX28DRAFT_4140at 121.455 kb on + strandat 121.467 kb on + strandat 121.468 kb on - strandat 121.504 kb on + strandat 121.532 kb on + strandat 121.541 kb on - strandat 121.549 kb on + strandat 121.569 kb on + strandat 121.573 kb on + strandat 121.574 kb on - strandat 121.627 kb on - strandat 121.633 kb on - strandat 121.654 kb on - strandat 122.011 kb on + strandat 122.011 kb on + strandat 122.011 kb on + strandat 122.012 kb on - strandat 122.012 kb on - strandat 122.393 kb on - strand, within EX28DRAFT_4141

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
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118,987 + EX28DRAFT_4139 0.39 +1.0
118,988 - EX28DRAFT_4139 0.39 -0.3
118,997 + EX28DRAFT_4139 0.40 +0.1
118,999 + EX28DRAFT_4139 0.40 +0.4
118,999 + EX28DRAFT_4139 0.40 +0.6
118,999 + EX28DRAFT_4139 0.40 +0.6
119,000 - EX28DRAFT_4139 0.40 -0.7
119,057 + EX28DRAFT_4139 0.44 +0.2
119,117 + EX28DRAFT_4139 0.49 +0.7
119,123 + EX28DRAFT_4139 0.49 -0.2
119,124 - EX28DRAFT_4139 0.49 -1.1
119,160 - EX28DRAFT_4139 0.52 +0.4
119,211 - EX28DRAFT_4139 0.56 +0.4
119,251 - EX28DRAFT_4139 0.59 -1.5
119,270 + EX28DRAFT_4139 0.60 +0.4
119,289 - EX28DRAFT_4139 0.62 +0.7
119,446 + EX28DRAFT_4139 0.73 +0.1
119,606 + EX28DRAFT_4139 0.85 +1.0
119,668 + EX28DRAFT_4139 0.90 +0.0
119,691 - -0.1
119,931 + -0.5
119,931 + +0.1
119,938 + -0.2
119,939 - -0.1
119,939 - +0.6
119,981 - +1.1
119,981 - -0.9
119,982 + -0.1
119,982 + +0.0
119,983 - -0.3
119,983 - +0.5
119,983 - +0.4
120,054 + -0.2
120,055 - +0.2
120,055 - +0.5
120,205 + EX28DRAFT_4140 0.17 +0.6
120,206 - EX28DRAFT_4140 0.17 +0.3
120,206 - EX28DRAFT_4140 0.17 -0.2
120,292 - EX28DRAFT_4140 0.22 -0.1
120,538 - EX28DRAFT_4140 0.38 -0.7
120,538 - EX28DRAFT_4140 0.38 +0.3
120,697 - EX28DRAFT_4140 0.47 -0.7
120,892 - EX28DRAFT_4140 0.59 -0.0
120,892 - EX28DRAFT_4140 0.59 -0.2
120,892 - EX28DRAFT_4140 0.59 -0.4
120,892 - EX28DRAFT_4140 0.59 -0.1
121,097 - EX28DRAFT_4140 0.72 -1.0
121,271 - EX28DRAFT_4140 0.83 -0.8
121,339 + EX28DRAFT_4140 0.87 -0.4
121,341 + EX28DRAFT_4140 0.87 -0.3
121,341 + EX28DRAFT_4140 0.87 +0.8
121,341 + EX28DRAFT_4140 0.87 -1.1
121,342 - EX28DRAFT_4140 0.87 -1.0
121,342 - EX28DRAFT_4140 0.87 -0.1
121,342 - EX28DRAFT_4140 0.87 +0.3
121,342 - EX28DRAFT_4140 0.87 -0.1
121,342 - EX28DRAFT_4140 0.87 +0.8
121,342 - EX28DRAFT_4140 0.87 +0.2
121,345 + EX28DRAFT_4140 0.87 -0.1
121,345 + EX28DRAFT_4140 0.87 -0.4
121,345 + EX28DRAFT_4140 0.87 +0.2
121,345 + EX28DRAFT_4140 0.87 -0.7
121,346 - EX28DRAFT_4140 0.87 -1.6
121,455 + -0.8
121,467 + +0.4
121,468 - -0.5
121,504 + -1.2
121,532 + +0.8
121,541 - +0.4
121,549 + +0.3
121,569 + +0.6
121,573 + -0.1
121,574 - -0.6
121,627 - -0.2
121,633 - +0.3
121,654 - -0.0
122,011 + +0.7
122,011 + -0.1
122,011 + +0.8
122,012 - +0.1
122,012 - -0.1
122,393 - EX28DRAFT_4141 0.51 +0.5

Or see this region's nucleotide sequence