Experiment: Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_4060 and EX28DRAFT_4061 are separated by 181 nucleotides EX28DRAFT_4061 and EX28DRAFT_4062 are separated by 71 nucleotides
EX28DRAFT_4060: EX28DRAFT_4060 - Neutral trehalase, at 34,133 to 35,782
_4060
EX28DRAFT_4061: EX28DRAFT_4061 - NADPH-glutathione reductase (EC 1.8.1.7), at 35,964 to 37,316
_4061
EX28DRAFT_4062: EX28DRAFT_4062 - Protein involved in catabolism of external DNA, at 37,388 to 38,230
_4062
Position (kb) 35
36
37
38 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 35.130 kb on + strand, within EX28DRAFT_4060 at 35.131 kb on - strand, within EX28DRAFT_4060 at 35.133 kb on + strand, within EX28DRAFT_4060 at 35.133 kb on + strand, within EX28DRAFT_4060 at 35.134 kb on - strand, within EX28DRAFT_4060 at 35.134 kb on - strand, within EX28DRAFT_4060 at 35.134 kb on - strand, within EX28DRAFT_4060 at 35.134 kb on - strand, within EX28DRAFT_4060 at 35.156 kb on - strand, within EX28DRAFT_4060 at 35.156 kb on - strand, within EX28DRAFT_4060 at 35.164 kb on - strand, within EX28DRAFT_4060 at 35.250 kb on + strand, within EX28DRAFT_4060 at 35.250 kb on + strand, within EX28DRAFT_4060 at 35.251 kb on - strand, within EX28DRAFT_4060 at 35.266 kb on - strand, within EX28DRAFT_4060 at 35.266 kb on - strand, within EX28DRAFT_4060 at 35.298 kb on + strand, within EX28DRAFT_4060 at 35.299 kb on - strand, within EX28DRAFT_4060 at 35.299 kb on - strand, within EX28DRAFT_4060 at 35.299 kb on - strand, within EX28DRAFT_4060 at 35.335 kb on + strand, within EX28DRAFT_4060 at 35.336 kb on - strand, within EX28DRAFT_4060 at 35.336 kb on - strand, within EX28DRAFT_4060 at 35.415 kb on + strand, within EX28DRAFT_4060 at 35.415 kb on + strand, within EX28DRAFT_4060 at 35.415 kb on + strand, within EX28DRAFT_4060 at 35.416 kb on - strand, within EX28DRAFT_4060 at 35.416 kb on - strand, within EX28DRAFT_4060 at 35.427 kb on + strand, within EX28DRAFT_4060 at 35.557 kb on + strand, within EX28DRAFT_4060 at 35.718 kb on + strand at 35.766 kb on - strand at 35.837 kb on - strand at 35.837 kb on - strand at 35.839 kb on - strand at 35.844 kb on + strand at 35.844 kb on + strand at 35.875 kb on - strand at 35.921 kb on + strand at 35.922 kb on - strand at 36.421 kb on + strand, within EX28DRAFT_4061 at 36.466 kb on + strand, within EX28DRAFT_4061 at 36.722 kb on + strand, within EX28DRAFT_4061 at 36.998 kb on + strand, within EX28DRAFT_4061 at 37.120 kb on + strand, within EX28DRAFT_4061 at 37.121 kb on - strand, within EX28DRAFT_4061 at 37.121 kb on - strand, within EX28DRAFT_4061 at 37.121 kb on - strand, within EX28DRAFT_4061 at 37.124 kb on + strand, within EX28DRAFT_4061 at 37.125 kb on - strand, within EX28DRAFT_4061 at 37.297 kb on + strand at 37.612 kb on + strand, within EX28DRAFT_4062 at 37.657 kb on - strand, within EX28DRAFT_4062 at 37.657 kb on - strand, within EX28DRAFT_4062 at 37.681 kb on - strand, within EX28DRAFT_4062 at 37.989 kb on + strand, within EX28DRAFT_4062 at 37.989 kb on + strand, within EX28DRAFT_4062 at 37.990 kb on - strand, within EX28DRAFT_4062 at 37.990 kb on - strand, within EX28DRAFT_4062 at 38.049 kb on + strand, within EX28DRAFT_4062 at 38.253 kb on - strand at 38.258 kb on + strand at 38.293 kb on - strand at 38.311 kb on - strand at 38.311 kb on - strand at 38.311 kb on - strand at 38.312 kb on + strand at 38.313 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days remove 35,130 + EX28DRAFT_4060 0.60 +0.4 35,131 - EX28DRAFT_4060 0.60 -0.4 35,133 + EX28DRAFT_4060 0.61 -0.3 35,133 + EX28DRAFT_4060 0.61 -0.0 35,134 - EX28DRAFT_4060 0.61 +0.8 35,134 - EX28DRAFT_4060 0.61 +0.4 35,134 - EX28DRAFT_4060 0.61 +0.8 35,134 - EX28DRAFT_4060 0.61 +0.1 35,156 - EX28DRAFT_4060 0.62 +0.6 35,156 - EX28DRAFT_4060 0.62 -0.1 35,164 - EX28DRAFT_4060 0.62 +0.0 35,250 + EX28DRAFT_4060 0.68 -1.4 35,250 + EX28DRAFT_4060 0.68 -2.3 35,251 - EX28DRAFT_4060 0.68 -0.8 35,266 - EX28DRAFT_4060 0.69 -0.9 35,266 - EX28DRAFT_4060 0.69 +2.5 35,298 + EX28DRAFT_4060 0.71 -0.6 35,299 - EX28DRAFT_4060 0.71 +1.4 35,299 - EX28DRAFT_4060 0.71 +0.1 35,299 - EX28DRAFT_4060 0.71 -0.2 35,335 + EX28DRAFT_4060 0.73 -1.9 35,336 - EX28DRAFT_4060 0.73 +1.0 35,336 - EX28DRAFT_4060 0.73 +0.3 35,415 + EX28DRAFT_4060 0.78 -0.6 35,415 + EX28DRAFT_4060 0.78 -0.1 35,415 + EX28DRAFT_4060 0.78 +0.1 35,416 - EX28DRAFT_4060 0.78 -0.0 35,416 - EX28DRAFT_4060 0.78 +2.0 35,427 + EX28DRAFT_4060 0.78 +0.5 35,557 + EX28DRAFT_4060 0.86 +0.3 35,718 + +0.0 35,766 - -0.1 35,837 - -0.5 35,837 - +0.3 35,839 - -0.6 35,844 + -0.5 35,844 + -0.3 35,875 - -0.5 35,921 + +0.6 35,922 - -0.1 36,421 + EX28DRAFT_4061 0.34 -1.0 36,466 + EX28DRAFT_4061 0.37 -2.0 36,722 + EX28DRAFT_4061 0.56 -1.5 36,998 + EX28DRAFT_4061 0.76 -1.0 37,120 + EX28DRAFT_4061 0.85 -2.0 37,121 - EX28DRAFT_4061 0.86 -3.1 37,121 - EX28DRAFT_4061 0.86 -0.7 37,121 - EX28DRAFT_4061 0.86 -0.4 37,124 + EX28DRAFT_4061 0.86 -0.3 37,125 - EX28DRAFT_4061 0.86 -2.4 37,297 + +0.5 37,612 + EX28DRAFT_4062 0.27 -0.2 37,657 - EX28DRAFT_4062 0.32 +0.5 37,657 - EX28DRAFT_4062 0.32 -1.1 37,681 - EX28DRAFT_4062 0.35 +0.2 37,989 + EX28DRAFT_4062 0.71 -2.1 37,989 + EX28DRAFT_4062 0.71 -0.3 37,990 - EX28DRAFT_4062 0.71 -0.1 37,990 - EX28DRAFT_4062 0.71 -0.7 38,049 + EX28DRAFT_4062 0.78 +0.9 38,253 - +0.7 38,258 + -0.0 38,293 - -3.4 38,311 - -0.3 38,311 - -0.2 38,311 - -0.6 38,312 + -0.7 38,313 - +0.9
Or see this region's nucleotide sequence