Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_3906

Experiment: Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_3905 and EX28DRAFT_3906 are separated by 12 nucleotidesEX28DRAFT_3906 and EX28DRAFT_3907 are separated by 288 nucleotides EX28DRAFT_3905: EX28DRAFT_3905 - Alpha-glucosidases, family 31 of glycosyl hydrolases, at 115,704 to 118,022 _3905 EX28DRAFT_3906: EX28DRAFT_3906 - sugar (Glycoside-Pentoside-Hexuronide) transporter, at 118,035 to 119,426 _3906 EX28DRAFT_3907: EX28DRAFT_3907 - tRNA, at 119,715 to 119,805 _3907 Position (kb) 118 119 120Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 117.181 kb on + strand, within EX28DRAFT_3905at 117.307 kb on + strand, within EX28DRAFT_3905at 117.317 kb on - strand, within EX28DRAFT_3905at 117.443 kb on - strand, within EX28DRAFT_3905at 117.577 kb on + strand, within EX28DRAFT_3905at 117.577 kb on + strand, within EX28DRAFT_3905at 117.578 kb on - strand, within EX28DRAFT_3905at 117.578 kb on - strand, within EX28DRAFT_3905at 117.578 kb on - strand, within EX28DRAFT_3905at 117.747 kb on + strand, within EX28DRAFT_3905at 117.748 kb on - strand, within EX28DRAFT_3905at 117.971 kb on - strandat 117.996 kb on - strandat 118.036 kb on + strandat 118.037 kb on - strandat 118.147 kb on + strandat 118.147 kb on + strandat 118.147 kb on + strandat 118.180 kb on + strand, within EX28DRAFT_3906at 118.181 kb on - strand, within EX28DRAFT_3906at 118.261 kb on + strand, within EX28DRAFT_3906at 118.346 kb on + strand, within EX28DRAFT_3906at 118.346 kb on + strand, within EX28DRAFT_3906at 118.669 kb on + strand, within EX28DRAFT_3906at 118.670 kb on - strand, within EX28DRAFT_3906at 118.670 kb on - strand, within EX28DRAFT_3906at 118.670 kb on - strand, within EX28DRAFT_3906at 118.670 kb on - strand, within EX28DRAFT_3906at 118.670 kb on - strand, within EX28DRAFT_3906at 118.673 kb on - strand, within EX28DRAFT_3906at 118.673 kb on - strand, within EX28DRAFT_3906at 118.997 kb on + strand, within EX28DRAFT_3906at 119.063 kb on - strand, within EX28DRAFT_3906at 119.083 kb on + strand, within EX28DRAFT_3906at 119.084 kb on - strand, within EX28DRAFT_3906at 119.088 kb on - strand, within EX28DRAFT_3906at 119.137 kb on + strand, within EX28DRAFT_3906at 119.415 kb on + strandat 119.416 kb on - strandat 119.479 kb on - strandat 119.617 kb on - strandat 119.674 kb on + strandat 119.679 kb on - strandat 119.679 kb on - strandat 119.680 kb on + strandat 119.828 kb on + strandat 119.871 kb on + strandat 119.889 kb on + strandat 120.057 kb on - strandat 120.090 kb on + strandat 120.230 kb on + strandat 120.233 kb on - strandat 120.332 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
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117,181 + EX28DRAFT_3905 0.64 -0.7
117,307 + EX28DRAFT_3905 0.69 -0.5
117,317 - EX28DRAFT_3905 0.70 +0.3
117,443 - EX28DRAFT_3905 0.75 -0.3
117,577 + EX28DRAFT_3905 0.81 +1.7
117,577 + EX28DRAFT_3905 0.81 -0.1
117,578 - EX28DRAFT_3905 0.81 +1.7
117,578 - EX28DRAFT_3905 0.81 -0.2
117,578 - EX28DRAFT_3905 0.81 -0.7
117,747 + EX28DRAFT_3905 0.88 +0.2
117,748 - EX28DRAFT_3905 0.88 -0.1
117,971 - +0.2
117,996 - +0.8
118,036 + +1.0
118,037 - -0.4
118,147 + +0.0
118,147 + -0.2
118,147 + -0.2
118,180 + EX28DRAFT_3906 0.10 +1.1
118,181 - EX28DRAFT_3906 0.10 +0.8
118,261 + EX28DRAFT_3906 0.16 +0.6
118,346 + EX28DRAFT_3906 0.22 +1.1
118,346 + EX28DRAFT_3906 0.22 -2.8
118,669 + EX28DRAFT_3906 0.46 +0.9
118,670 - EX28DRAFT_3906 0.46 +0.7
118,670 - EX28DRAFT_3906 0.46 -0.1
118,670 - EX28DRAFT_3906 0.46 -0.4
118,670 - EX28DRAFT_3906 0.46 +1.8
118,670 - EX28DRAFT_3906 0.46 -0.8
118,673 - EX28DRAFT_3906 0.46 +0.3
118,673 - EX28DRAFT_3906 0.46 -1.2
118,997 + EX28DRAFT_3906 0.69 -1.0
119,063 - EX28DRAFT_3906 0.74 -0.2
119,083 + EX28DRAFT_3906 0.75 +0.4
119,084 - EX28DRAFT_3906 0.75 -1.2
119,088 - EX28DRAFT_3906 0.76 +2.0
119,137 + EX28DRAFT_3906 0.79 -0.1
119,415 + -1.7
119,416 - +0.1
119,479 - -0.7
119,617 - -1.7
119,674 + +0.1
119,679 - -0.6
119,679 - +0.9
119,680 + -0.5
119,828 + -0.7
119,871 + +0.7
119,889 + +0.4
120,057 - -0.9
120,090 + -0.9
120,230 + -0.1
120,233 - +0.1
120,332 - -0.6

Or see this region's nucleotide sequence