Experiment: Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_3897 and EX28DRAFT_3898 are separated by 54 nucleotides EX28DRAFT_3898 and EX28DRAFT_3899 are separated by 19 nucleotides EX28DRAFT_3899 and EX28DRAFT_3900 are separated by 37 nucleotides EX28DRAFT_3900 and EX28DRAFT_3901 are separated by 3 nucleotides
EX28DRAFT_3897: EX28DRAFT_3897 - guanylate kinase (EC 2.7.4.8), at 105,144 to 105,767
_3897
EX28DRAFT_3898: EX28DRAFT_3898 - DNA-directed RNA polymerase subunit omega (EC 2.7.7.6), at 105,822 to 106,097
_3898
EX28DRAFT_3899: EX28DRAFT_3899 - (p)ppGpp synthetase, RelA/SpoT family, at 106,117 to 108,231
_3899
EX28DRAFT_3900: EX28DRAFT_3900 - SpoU rRNA Methylase family/SpoU, rRNA methylase, C-terminal, at 108,269 to 108,925
_3900
EX28DRAFT_3901: EX28DRAFT_3901 - ATP-dependent DNA helicase RecG (EC 3.6.1.-), at 108,929 to 111,010
_3901
Position (kb) 106
107
108
109 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 105.817 kb on + strand at 105.821 kb on + strand at 105.965 kb on + strand, within EX28DRAFT_3898 at 107.922 kb on + strand, within EX28DRAFT_3899 at 107.923 kb on - strand, within EX28DRAFT_3899 at 107.977 kb on - strand, within EX28DRAFT_3899 at 108.010 kb on - strand, within EX28DRAFT_3899 at 108.018 kb on + strand, within EX28DRAFT_3899 at 108.018 kb on + strand, within EX28DRAFT_3899 at 108.018 kb on + strand, within EX28DRAFT_3899 at 108.171 kb on + strand at 108.230 kb on - strand at 108.230 kb on - strand at 108.251 kb on + strand at 108.259 kb on + strand at 108.319 kb on + strand at 108.319 kb on + strand at 108.319 kb on + strand at 108.320 kb on - strand at 108.320 kb on - strand at 108.711 kb on - strand, within EX28DRAFT_3900 at 108.746 kb on + strand, within EX28DRAFT_3900 at 108.747 kb on - strand, within EX28DRAFT_3900 at 109.109 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days remove 105,817 + -0.9 105,821 + -0.5 105,965 + EX28DRAFT_3898 0.52 -0.5 107,922 + EX28DRAFT_3899 0.85 -1.5 107,923 - EX28DRAFT_3899 0.85 -3.1 107,977 - EX28DRAFT_3899 0.88 +0.1 108,010 - EX28DRAFT_3899 0.90 -1.8 108,018 + EX28DRAFT_3899 0.90 -0.4 108,018 + EX28DRAFT_3899 0.90 -1.2 108,018 + EX28DRAFT_3899 0.90 -0.4 108,171 + -2.3 108,230 - -0.7 108,230 - -0.9 108,251 + -0.3 108,259 + -1.1 108,319 + -0.5 108,319 + +0.3 108,319 + -1.0 108,320 - -1.6 108,320 - -3.9 108,711 - EX28DRAFT_3900 0.67 -2.1 108,746 + EX28DRAFT_3900 0.73 -0.6 108,747 - EX28DRAFT_3900 0.73 -0.0 109,109 + -1.1
Or see this region's nucleotide sequence