Experiment: Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_3882 and EX28DRAFT_3883 overlap by 1 nucleotides EX28DRAFT_3883 and EX28DRAFT_3884 are separated by 3 nucleotides EX28DRAFT_3884 and EX28DRAFT_3885 are separated by 2 nucleotides
EX28DRAFT_3882: EX28DRAFT_3882 - 3-deoxy-D-manno-octulosonic-acid transferase, at 92,679 to 93,953
_3882
EX28DRAFT_3883: EX28DRAFT_3883 - Glycosyltransferases involved in cell wall biogenesis, at 93,953 to 94,723
_3883
EX28DRAFT_3884: EX28DRAFT_3884 - Phosphopantetheine adenylyltransferase (EC 2.7.7.3), at 94,727 to 95,206
_3884
EX28DRAFT_3885: EX28DRAFT_3885 - DNA-(apurinic or apyrimidinic site) lyase (EC 4.2.99.18), at 95,209 to 96,018
_3885
Position (kb) 93
94
95 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 93.930 kb on + strand at 94.182 kb on - strand, within EX28DRAFT_3883 at 94.355 kb on + strand, within EX28DRAFT_3883 at 94.376 kb on + strand, within EX28DRAFT_3883 at 94.664 kb on - strand at 95.199 kb on + strand at 95.199 kb on + strand at 95.200 kb on - strand at 95.205 kb on - strand at 95.205 kb on - strand at 95.210 kb on + strand at 95.309 kb on + strand, within EX28DRAFT_3885 at 95.311 kb on + strand, within EX28DRAFT_3885 at 95.311 kb on + strand, within EX28DRAFT_3885 at 95.311 kb on + strand, within EX28DRAFT_3885 at 95.311 kb on + strand, within EX28DRAFT_3885 at 95.311 kb on + strand, within EX28DRAFT_3885 at 95.312 kb on - strand, within EX28DRAFT_3885 at 95.312 kb on - strand, within EX28DRAFT_3885 at 95.312 kb on - strand, within EX28DRAFT_3885 at 95.312 kb on - strand, within EX28DRAFT_3885 at 95.312 kb on - strand, within EX28DRAFT_3885 at 95.312 kb on - strand, within EX28DRAFT_3885 at 95.312 kb on - strand, within EX28DRAFT_3885 at 95.334 kb on - strand, within EX28DRAFT_3885 at 95.397 kb on + strand, within EX28DRAFT_3885 at 95.398 kb on - strand, within EX28DRAFT_3885 at 95.398 kb on - strand, within EX28DRAFT_3885 at 95.401 kb on + strand, within EX28DRAFT_3885 at 95.401 kb on + strand, within EX28DRAFT_3885 at 95.404 kb on + strand, within EX28DRAFT_3885 at 95.413 kb on - strand, within EX28DRAFT_3885 at 95.507 kb on + strand, within EX28DRAFT_3885 at 95.508 kb on - strand, within EX28DRAFT_3885 at 95.512 kb on - strand, within EX28DRAFT_3885 at 95.538 kb on + strand, within EX28DRAFT_3885 at 95.595 kb on - strand, within EX28DRAFT_3885 at 95.595 kb on - strand, within EX28DRAFT_3885
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days remove 93,930 + -0.6 94,182 - EX28DRAFT_3883 0.30 -0.1 94,355 + EX28DRAFT_3883 0.52 -1.4 94,376 + EX28DRAFT_3883 0.55 -1.2 94,664 - -2.2 95,199 + +0.2 95,199 + +0.2 95,200 - -0.9 95,205 - +0.2 95,205 - -0.3 95,210 + -0.1 95,309 + EX28DRAFT_3885 0.12 -0.3 95,311 + EX28DRAFT_3885 0.13 -1.3 95,311 + EX28DRAFT_3885 0.13 -0.5 95,311 + EX28DRAFT_3885 0.13 +0.3 95,311 + EX28DRAFT_3885 0.13 +0.6 95,311 + EX28DRAFT_3885 0.13 +0.9 95,312 - EX28DRAFT_3885 0.13 +2.0 95,312 - EX28DRAFT_3885 0.13 -0.1 95,312 - EX28DRAFT_3885 0.13 +1.6 95,312 - EX28DRAFT_3885 0.13 +0.0 95,312 - EX28DRAFT_3885 0.13 +0.0 95,312 - EX28DRAFT_3885 0.13 +1.1 95,312 - EX28DRAFT_3885 0.13 -1.4 95,334 - EX28DRAFT_3885 0.15 -0.1 95,397 + EX28DRAFT_3885 0.23 -0.4 95,398 - EX28DRAFT_3885 0.23 +0.6 95,398 - EX28DRAFT_3885 0.23 +2.2 95,401 + EX28DRAFT_3885 0.24 +4.3 95,401 + EX28DRAFT_3885 0.24 +0.0 95,404 + EX28DRAFT_3885 0.24 +0.0 95,413 - EX28DRAFT_3885 0.25 +0.4 95,507 + EX28DRAFT_3885 0.37 +0.8 95,508 - EX28DRAFT_3885 0.37 -0.3 95,512 - EX28DRAFT_3885 0.37 +0.5 95,538 + EX28DRAFT_3885 0.41 +0.6 95,595 - EX28DRAFT_3885 0.48 -0.6 95,595 - EX28DRAFT_3885 0.48 -3.2
Or see this region's nucleotide sequence