Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_3875

Experiment: Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_3874 and EX28DRAFT_3875 are separated by 5 nucleotidesEX28DRAFT_3875 and EX28DRAFT_3876 overlap by 13 nucleotides EX28DRAFT_3874: EX28DRAFT_3874 - ADP-heptose:LPS heptosyltransferase, at 83,957 to 85,066 _3874 EX28DRAFT_3875: EX28DRAFT_3875 - Glycosyltransferases involved in cell wall biogenesis, at 85,072 to 85,980 _3875 EX28DRAFT_3876: EX28DRAFT_3876 - Lipid A core - O-antigen ligase and related enzymes, at 85,968 to 87,182 _3876 Position (kb) 85 86Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 84.096 kb on - strand, within EX28DRAFT_3874at 84.127 kb on + strand, within EX28DRAFT_3874at 84.190 kb on + strand, within EX28DRAFT_3874at 84.190 kb on + strand, within EX28DRAFT_3874at 84.190 kb on + strand, within EX28DRAFT_3874at 84.191 kb on - strand, within EX28DRAFT_3874at 84.191 kb on - strand, within EX28DRAFT_3874at 84.191 kb on - strand, within EX28DRAFT_3874at 84.197 kb on - strand, within EX28DRAFT_3874at 84.197 kb on - strand, within EX28DRAFT_3874at 84.254 kb on + strand, within EX28DRAFT_3874at 84.254 kb on + strand, within EX28DRAFT_3874at 84.254 kb on + strand, within EX28DRAFT_3874at 84.255 kb on - strand, within EX28DRAFT_3874at 84.332 kb on + strand, within EX28DRAFT_3874at 84.332 kb on + strand, within EX28DRAFT_3874at 84.332 kb on + strand, within EX28DRAFT_3874at 84.419 kb on + strand, within EX28DRAFT_3874at 84.500 kb on + strand, within EX28DRAFT_3874at 84.501 kb on - strand, within EX28DRAFT_3874at 84.636 kb on - strand, within EX28DRAFT_3874at 84.690 kb on - strand, within EX28DRAFT_3874at 84.710 kb on - strand, within EX28DRAFT_3874at 84.773 kb on + strand, within EX28DRAFT_3874at 84.773 kb on + strand, within EX28DRAFT_3874at 84.774 kb on - strand, within EX28DRAFT_3874at 84.801 kb on - strand, within EX28DRAFT_3874at 84.801 kb on - strand, within EX28DRAFT_3874at 84.803 kb on - strand, within EX28DRAFT_3874at 84.822 kb on + strand, within EX28DRAFT_3874at 84.823 kb on - strand, within EX28DRAFT_3874at 84.882 kb on + strand, within EX28DRAFT_3874at 84.882 kb on + strand, within EX28DRAFT_3874at 84.883 kb on - strand, within EX28DRAFT_3874at 84.883 kb on - strand, within EX28DRAFT_3874at 84.918 kb on - strand, within EX28DRAFT_3874at 84.918 kb on - strand, within EX28DRAFT_3874at 84.918 kb on - strand, within EX28DRAFT_3874at 84.936 kb on - strand, within EX28DRAFT_3874at 84.936 kb on - strand, within EX28DRAFT_3874at 84.938 kb on + strand, within EX28DRAFT_3874at 85.017 kb on + strandat 85.040 kb on + strandat 85.041 kb on - strandat 85.041 kb on - strandat 85.069 kb on - strandat 85.069 kb on - strandat 85.083 kb on + strandat 85.084 kb on - strandat 85.084 kb on - strandat 85.116 kb on + strandat 85.128 kb on + strandat 85.133 kb on + strandat 85.175 kb on + strand, within EX28DRAFT_3875at 85.175 kb on + strand, within EX28DRAFT_3875at 85.175 kb on + strand, within EX28DRAFT_3875at 85.175 kb on + strand, within EX28DRAFT_3875at 85.176 kb on - strand, within EX28DRAFT_3875at 85.176 kb on - strand, within EX28DRAFT_3875at 85.185 kb on + strand, within EX28DRAFT_3875at 85.221 kb on + strand, within EX28DRAFT_3875at 85.221 kb on + strand, within EX28DRAFT_3875at 85.222 kb on - strand, within EX28DRAFT_3875at 85.222 kb on - strand, within EX28DRAFT_3875at 85.224 kb on + strand, within EX28DRAFT_3875at 85.286 kb on + strand, within EX28DRAFT_3875at 85.286 kb on + strand, within EX28DRAFT_3875at 85.287 kb on - strand, within EX28DRAFT_3875at 85.287 kb on - strand, within EX28DRAFT_3875at 85.287 kb on - strand, within EX28DRAFT_3875at 85.287 kb on - strand, within EX28DRAFT_3875at 85.330 kb on + strand, within EX28DRAFT_3875at 85.330 kb on + strand, within EX28DRAFT_3875at 85.330 kb on + strand, within EX28DRAFT_3875at 85.331 kb on - strand, within EX28DRAFT_3875at 85.331 kb on - strand, within EX28DRAFT_3875at 85.331 kb on - strand, within EX28DRAFT_3875at 85.331 kb on - strand, within EX28DRAFT_3875at 85.331 kb on - strand, within EX28DRAFT_3875at 85.335 kb on + strand, within EX28DRAFT_3875at 85.335 kb on + strand, within EX28DRAFT_3875at 85.335 kb on + strand, within EX28DRAFT_3875at 85.336 kb on - strand, within EX28DRAFT_3875at 85.376 kb on + strand, within EX28DRAFT_3875at 85.377 kb on - strand, within EX28DRAFT_3875at 85.417 kb on - strand, within EX28DRAFT_3875at 85.417 kb on - strand, within EX28DRAFT_3875at 85.461 kb on + strand, within EX28DRAFT_3875at 85.504 kb on + strand, within EX28DRAFT_3875at 85.505 kb on - strand, within EX28DRAFT_3875at 85.514 kb on + strand, within EX28DRAFT_3875at 85.566 kb on + strand, within EX28DRAFT_3875at 85.583 kb on - strand, within EX28DRAFT_3875at 85.586 kb on + strand, within EX28DRAFT_3875at 85.587 kb on - strand, within EX28DRAFT_3875at 85.587 kb on - strand, within EX28DRAFT_3875at 85.664 kb on + strand, within EX28DRAFT_3875at 85.665 kb on - strand, within EX28DRAFT_3875at 85.687 kb on + strand, within EX28DRAFT_3875at 85.690 kb on + strand, within EX28DRAFT_3875at 85.691 kb on - strand, within EX28DRAFT_3875at 85.694 kb on - strand, within EX28DRAFT_3875at 85.694 kb on - strand, within EX28DRAFT_3875at 85.694 kb on - strand, within EX28DRAFT_3875at 85.694 kb on - strand, within EX28DRAFT_3875at 85.900 kb on + strandat 85.931 kb on + strandat 85.932 kb on - strandat 86.071 kb on - strandat 86.164 kb on + strand, within EX28DRAFT_3876at 86.164 kb on + strand, within EX28DRAFT_3876at 86.196 kb on + strand, within EX28DRAFT_3876at 86.317 kb on - strand, within EX28DRAFT_3876at 86.338 kb on + strand, within EX28DRAFT_3876at 86.365 kb on + strand, within EX28DRAFT_3876at 86.376 kb on + strand, within EX28DRAFT_3876at 86.376 kb on + strand, within EX28DRAFT_3876at 86.377 kb on - strand, within EX28DRAFT_3876at 86.412 kb on - strand, within EX28DRAFT_3876at 86.478 kb on - strand, within EX28DRAFT_3876at 86.479 kb on + strand, within EX28DRAFT_3876at 86.479 kb on + strand, within EX28DRAFT_3876at 86.480 kb on - strand, within EX28DRAFT_3876at 86.507 kb on + strand, within EX28DRAFT_3876at 86.558 kb on - strand, within EX28DRAFT_3876at 86.669 kb on + strand, within EX28DRAFT_3876at 86.723 kb on - strand, within EX28DRAFT_3876at 86.752 kb on - strand, within EX28DRAFT_3876at 86.862 kb on - strand, within EX28DRAFT_3876at 86.924 kb on - strand, within EX28DRAFT_3876

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
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84,096 - EX28DRAFT_3874 0.13 +0.7
84,127 + EX28DRAFT_3874 0.15 -0.6
84,190 + EX28DRAFT_3874 0.21 -0.8
84,190 + EX28DRAFT_3874 0.21 +0.1
84,190 + EX28DRAFT_3874 0.21 -0.6
84,191 - EX28DRAFT_3874 0.21 +1.0
84,191 - EX28DRAFT_3874 0.21 +0.8
84,191 - EX28DRAFT_3874 0.21 +0.5
84,197 - EX28DRAFT_3874 0.22 +0.7
84,197 - EX28DRAFT_3874 0.22 +0.9
84,254 + EX28DRAFT_3874 0.27 -0.9
84,254 + EX28DRAFT_3874 0.27 +0.2
84,254 + EX28DRAFT_3874 0.27 -0.2
84,255 - EX28DRAFT_3874 0.27 +0.4
84,332 + EX28DRAFT_3874 0.34 +0.0
84,332 + EX28DRAFT_3874 0.34 -0.6
84,332 + EX28DRAFT_3874 0.34 -0.4
84,419 + EX28DRAFT_3874 0.42 +0.8
84,500 + EX28DRAFT_3874 0.49 +0.4
84,501 - EX28DRAFT_3874 0.49 +1.6
84,636 - EX28DRAFT_3874 0.61 +1.0
84,690 - EX28DRAFT_3874 0.66 +1.1
84,710 - EX28DRAFT_3874 0.68 +0.9
84,773 + EX28DRAFT_3874 0.74 -0.8
84,773 + EX28DRAFT_3874 0.74 -0.3
84,774 - EX28DRAFT_3874 0.74 +1.1
84,801 - EX28DRAFT_3874 0.76 +0.8
84,801 - EX28DRAFT_3874 0.76 +0.9
84,803 - EX28DRAFT_3874 0.76 +1.2
84,822 + EX28DRAFT_3874 0.78 -0.3
84,823 - EX28DRAFT_3874 0.78 +0.6
84,882 + EX28DRAFT_3874 0.83 +0.3
84,882 + EX28DRAFT_3874 0.83 -0.5
84,883 - EX28DRAFT_3874 0.83 +0.1
84,883 - EX28DRAFT_3874 0.83 +0.3
84,918 - EX28DRAFT_3874 0.87 +0.8
84,918 - EX28DRAFT_3874 0.87 +1.7
84,918 - EX28DRAFT_3874 0.87 +0.9
84,936 - EX28DRAFT_3874 0.88 +1.4
84,936 - EX28DRAFT_3874 0.88 +1.0
84,938 + EX28DRAFT_3874 0.88 -0.7
85,017 + +0.4
85,040 + -0.3
85,041 - +1.4
85,041 - +0.4
85,069 - -0.0
85,069 - +0.4
85,083 + +0.8
85,084 - +0.4
85,084 - +0.5
85,116 + +0.2
85,128 + +0.6
85,133 + +0.0
85,175 + EX28DRAFT_3875 0.11 +0.9
85,175 + EX28DRAFT_3875 0.11 +0.8
85,175 + EX28DRAFT_3875 0.11 +0.1
85,175 + EX28DRAFT_3875 0.11 +0.2
85,176 - EX28DRAFT_3875 0.11 +0.5
85,176 - EX28DRAFT_3875 0.11 +0.6
85,185 + EX28DRAFT_3875 0.12 +0.9
85,221 + EX28DRAFT_3875 0.16 +0.9
85,221 + EX28DRAFT_3875 0.16 -1.1
85,222 - EX28DRAFT_3875 0.17 +4.7
85,222 - EX28DRAFT_3875 0.17 +0.5
85,224 + EX28DRAFT_3875 0.17 +0.2
85,286 + EX28DRAFT_3875 0.24 -0.5
85,286 + EX28DRAFT_3875 0.24 +0.5
85,287 - EX28DRAFT_3875 0.24 +0.7
85,287 - EX28DRAFT_3875 0.24 -0.5
85,287 - EX28DRAFT_3875 0.24 +1.1
85,287 - EX28DRAFT_3875 0.24 +0.9
85,330 + EX28DRAFT_3875 0.28 +0.7
85,330 + EX28DRAFT_3875 0.28 +0.2
85,330 + EX28DRAFT_3875 0.28 +0.5
85,331 - EX28DRAFT_3875 0.28 +0.3
85,331 - EX28DRAFT_3875 0.28 +0.8
85,331 - EX28DRAFT_3875 0.28 +0.5
85,331 - EX28DRAFT_3875 0.28 +0.7
85,331 - EX28DRAFT_3875 0.28 +0.4
85,335 + EX28DRAFT_3875 0.29 +0.2
85,335 + EX28DRAFT_3875 0.29 +0.6
85,335 + EX28DRAFT_3875 0.29 +0.7
85,336 - EX28DRAFT_3875 0.29 +0.4
85,376 + EX28DRAFT_3875 0.33 +1.0
85,377 - EX28DRAFT_3875 0.34 -0.6
85,417 - EX28DRAFT_3875 0.38 +0.8
85,417 - EX28DRAFT_3875 0.38 +0.5
85,461 + EX28DRAFT_3875 0.43 +0.6
85,504 + EX28DRAFT_3875 0.48 +0.0
85,505 - EX28DRAFT_3875 0.48 +0.3
85,514 + EX28DRAFT_3875 0.49 +0.2
85,566 + EX28DRAFT_3875 0.54 +0.4
85,583 - EX28DRAFT_3875 0.56 +0.6
85,586 + EX28DRAFT_3875 0.57 -0.3
85,587 - EX28DRAFT_3875 0.57 +1.0
85,587 - EX28DRAFT_3875 0.57 +0.9
85,664 + EX28DRAFT_3875 0.65 -0.0
85,665 - EX28DRAFT_3875 0.65 +0.8
85,687 + EX28DRAFT_3875 0.68 +0.3
85,690 + EX28DRAFT_3875 0.68 +0.4
85,691 - EX28DRAFT_3875 0.68 +0.6
85,694 - EX28DRAFT_3875 0.68 +0.9
85,694 - EX28DRAFT_3875 0.68 -3.5
85,694 - EX28DRAFT_3875 0.68 +0.8
85,694 - EX28DRAFT_3875 0.68 +0.2
85,900 + +0.7
85,931 + +0.5
85,932 - +1.1
86,071 - +0.6
86,164 + EX28DRAFT_3876 0.16 +1.0
86,164 + EX28DRAFT_3876 0.16 +1.0
86,196 + EX28DRAFT_3876 0.19 +0.7
86,317 - EX28DRAFT_3876 0.29 +0.3
86,338 + EX28DRAFT_3876 0.30 +0.2
86,365 + EX28DRAFT_3876 0.33 +0.6
86,376 + EX28DRAFT_3876 0.34 +0.5
86,376 + EX28DRAFT_3876 0.34 +0.7
86,377 - EX28DRAFT_3876 0.34 +0.5
86,412 - EX28DRAFT_3876 0.37 +0.6
86,478 - EX28DRAFT_3876 0.42 +0.3
86,479 + EX28DRAFT_3876 0.42 -0.8
86,479 + EX28DRAFT_3876 0.42 +0.1
86,480 - EX28DRAFT_3876 0.42 +0.5
86,507 + EX28DRAFT_3876 0.44 +0.5
86,558 - EX28DRAFT_3876 0.49 -0.1
86,669 + EX28DRAFT_3876 0.58 +0.5
86,723 - EX28DRAFT_3876 0.62 +0.9
86,752 - EX28DRAFT_3876 0.65 +0.8
86,862 - EX28DRAFT_3876 0.74 +0.1
86,924 - EX28DRAFT_3876 0.79 +0.6

Or see this region's nucleotide sequence